Wall clock time and date at job start Tue Mar 31 2020 11:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48502 * 109.46986 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.46998 * 29.99547 * 3 2 1 6 6 H 1.48503 * 109.47247 * 149.99689 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00100 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47446 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00183 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46997 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47092 * 64.99713 * 12 11 10 14 14 C 1.34773 * 116.99683 * 179.97438 * 13 12 11 15 15 O 1.21540 * 120.00239 * 0.02562 * 14 13 12 16 16 C 1.47176 * 119.99758 * 179.97438 * 14 13 12 17 17 C 1.37990 * 126.81760 * 0.03009 * 16 14 13 18 18 N 1.34156 * 107.88733 * 179.97438 * 17 16 14 19 19 H 0.96998 * 125.16151 * 180.02562 * 18 17 16 20 20 N 1.39775 * 109.68865 * 359.97438 * 18 17 16 21 21 C 1.31370 * 109.08328 * 0.02562 * 20 18 17 22 22 C 1.48244 * 126.51102 * 179.97438 * 21 20 18 23 23 C 1.39382 * 119.73039 * 334.75455 * 22 21 20 24 24 C 1.38392 * 119.06028 * 179.79487 * 23 22 21 25 25 C 1.38790 * 118.51571 * 0.46813 * 24 23 22 26 26 C 1.38259 * 119.37594 * 359.74744 * 25 24 23 27 27 N 1.31756 * 120.89783 * 0.02718 * 26 25 24 28 28 H 0.97000 * 120.00745 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46997 * 60.00169 * 9 7 2 30 30 H 1.09003 * 109.47101 * 300.00293 * 9 7 2 31 31 H 1.08995 * 109.47775 * 59.99683 * 11 10 9 32 32 H 1.09001 * 109.46959 * 299.99809 * 11 10 9 33 33 H 1.08993 * 109.47073 * 304.99552 * 12 11 10 34 34 H 1.09001 * 109.46985 * 184.99757 * 12 11 10 35 35 H 1.08003 * 126.05636 * 359.97438 * 17 16 14 36 36 H 1.07997 * 120.47331 * 0.02562 * 23 22 21 37 37 H 1.07997 * 120.74123 * 180.23947 * 24 23 22 38 38 H 1.08002 * 120.31447 * 179.72909 * 25 24 23 39 39 H 1.07997 * 119.55286 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4124 -2.6540 0.0021 12 6 5.8069 -4.1323 0.0025 13 8 5.3737 -4.7492 -1.2384 14 6 5.6467 -6.0593 -1.3983 15 8 6.2306 -6.6695 -0.5243 16 6 5.2369 -6.7512 -2.6309 17 6 4.5711 -6.1998 -3.7065 18 7 4.3898 -7.1667 -4.6186 19 1 3.9472 -7.0518 -5.4740 20 7 4.9365 -8.3647 -4.1499 21 6 5.4559 -8.1634 -2.9602 22 6 6.1343 -9.1721 -2.1118 23 6 5.8308 -10.5235 -2.2680 24 6 6.4756 -11.4537 -1.4716 25 6 7.3965 -11.0011 -0.5371 26 6 7.6460 -9.6452 -0.4324 27 7 7.0216 -8.7806 -1.2061 28 1 -0.4851 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8912 30 1 3.8752 -0.6803 -0.8888 31 1 5.8145 -2.1708 0.8925 32 1 5.8159 -2.1701 -0.8874 33 1 5.3306 -4.6352 0.8440 34 1 6.8897 -4.2193 0.0929 35 1 4.2524 -5.1719 -3.7978 36 1 5.1056 -10.8405 -3.0027 37 1 6.2640 -12.5079 -1.5724 38 1 7.9132 -11.7013 0.1025 39 1 8.3617 -9.2898 0.2941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815247708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:01 Heat of formation + Delta-G solvation = -32.173981 kcal Electronic energy + Delta-G solvation = -24993.940131 eV Core-core repulsion = 21096.251805 eV Total energy + Delta-G solvation = -3897.688327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33523 -40.82787 -40.72009 -38.69906 -37.07058 -34.86988 -34.05177 -33.34585 -32.26631 -31.23116 -31.07854 -29.47369 -25.46289 -24.99261 -24.39736 -23.97574 -23.24292 -21.88063 -21.10879 -19.38762 -19.04888 -18.28329 -17.79797 -17.71287 -17.00838 -16.92166 -16.88115 -16.52600 -16.38140 -16.15622 -15.80616 -15.05887 -14.88719 -14.69944 -14.54550 -14.29531 -14.09890 -13.86180 -13.56314 -13.26597 -12.96059 -12.71201 -12.60933 -12.34166 -12.23211 -11.82382 -11.57084 -11.43115 -11.31967 -11.27603 -10.91237 -10.73792 -10.36672 -10.17255 -10.10132 -9.64564 -8.35375 -6.43580 -0.28487 0.35452 0.41539 1.08673 1.35999 1.39315 1.47032 1.50154 1.88586 2.18158 2.31594 2.94314 2.97291 2.97647 3.01114 3.44254 3.77569 4.01834 4.05424 4.06015 4.13734 4.19395 4.20945 4.29047 4.36100 4.46402 4.56376 4.61148 4.65678 4.77810 4.83510 4.97893 5.03885 5.18695 5.27052 5.45070 5.57047 5.77952 5.94072 6.05589 6.27736 6.60434 6.74178 7.02042 7.11092 7.20806 8.81834 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002576 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.631205 B =10865.166639 C =11585.038986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.242 1.242 7 C -0.546 4.546 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.406 6.406 11 C 0.053 3.947 12 C 0.080 3.920 13 O -0.359 6.359 14 C 0.525 3.475 15 O -0.501 6.501 16 C -0.293 4.293 17 C 0.160 3.840 18 N -0.439 5.439 19 H 0.467 0.533 20 N -0.283 5.283 21 C 0.164 3.836 22 C 0.149 3.851 23 C -0.143 4.143 24 C -0.081 4.081 25 C -0.151 4.151 26 C 0.080 3.920 27 N -0.455 5.455 28 H 0.273 0.727 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.228 0.772 36 H 0.147 0.853 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.399 -19.482 -7.851 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.165 1.165 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.326 6.326 11 C -0.024 4.024 12 C 0.007 3.993 13 O -0.277 6.277 14 C 0.370 3.630 15 O -0.389 6.389 16 C -0.306 4.306 17 C 0.008 3.992 18 N -0.147 5.147 19 H 0.316 0.684 20 N -0.106 5.106 21 C -0.004 4.004 22 C 0.011 3.989 23 C -0.164 4.164 24 C -0.106 4.106 25 C -0.171 4.171 26 C -0.079 4.079 27 N -0.165 5.165 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.165 0.835 37 H 0.191 0.809 38 H 0.190 0.810 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.242 -19.630 -8.428 27.453 hybrid contribution -0.442 0.786 0.359 0.970 sum 16.800 -18.844 -8.069 26.504 Atomic orbital electron populations 1.70035 1.08358 1.28788 1.51136 1.25870 0.95809 1.03510 0.93440 0.85585 0.79501 0.77230 0.79878 1.18216 1.20125 1.16540 1.21171 0.91110 0.93743 1.52351 0.95436 1.20363 0.93189 0.80715 0.95482 1.87930 1.20719 1.28578 1.95372 1.22738 0.82713 0.94355 1.02552 1.23108 1.00481 0.91760 0.83972 1.86586 1.74829 1.24541 1.41720 1.20146 0.76288 0.80144 0.86443 1.90885 1.38678 1.66523 1.42785 1.20468 1.18607 0.93878 0.97669 1.23693 0.91660 0.96803 0.87013 1.45995 1.45151 1.05043 1.18528 0.68364 1.77203 1.17194 1.05104 1.11058 1.21547 0.95963 0.91180 0.91724 1.18600 0.95989 0.90054 0.94240 1.22277 1.01124 0.92088 1.00955 1.21959 0.93924 1.01460 0.93268 1.22691 0.98269 0.97049 0.99057 1.23207 0.97490 0.90270 0.96889 1.67753 1.05894 1.39755 1.03109 0.91828 0.96587 0.96547 0.89356 0.91354 0.91994 0.87623 0.75541 0.83485 0.80869 0.80958 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.22 13.96 21.44 0.30 -58.92 16 2 C 0.01 0.67 5.47 84.66 0.46 1.14 16 3 Si 0.96 42.54 27.47 68.60 1.88 44.43 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 7 C -0.55 -33.16 9.99 25.60 0.26 -32.90 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.18 8.77 4.76 71.24 0.34 9.11 16 10 O -0.41 -18.87 10.30 -145.56 -1.50 -20.36 16 11 C 0.05 1.74 6.33 71.98 0.46 2.20 16 12 C 0.08 2.52 5.86 71.98 0.42 2.94 16 13 O -0.36 -12.33 10.03 -54.17 -0.54 -12.87 16 14 C 0.53 18.11 7.95 70.17 0.56 18.66 16 15 O -0.50 -18.90 13.46 19.71 0.27 -18.63 16 16 C -0.29 -8.66 6.30 -18.79 -0.12 -8.78 16 17 C 0.16 3.35 11.84 84.28 1.00 4.35 16 18 N -0.44 -7.59 7.20 -56.41 -0.41 -7.99 16 19 H 0.47 3.96 8.96 -213.53 -1.91 2.04 16 20 N -0.28 -6.76 12.53 -44.52 -0.56 -7.32 16 21 C 0.16 4.70 7.11 44.07 0.31 5.02 16 22 C 0.15 4.15 6.63 41.95 0.28 4.43 16 23 C -0.14 -2.95 9.75 22.58 0.22 -2.73 16 24 C -0.08 -1.16 10.17 22.44 0.23 -0.93 16 25 C -0.15 -2.18 10.11 22.41 0.23 -1.95 16 26 C 0.08 1.73 11.17 84.71 0.95 2.67 16 27 N -0.46 -13.48 7.06 -184.89 -1.31 -14.79 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.02 0.76 7.20 -2.38 -0.02 0.74 16 30 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.23 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.15 2.59 8.04 -2.91 -0.02 2.57 16 37 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -85.82 349.14 2.85 -82.97 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.87 Total: 10.27 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.58 Total: 3.23 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.97 Total: -89.03 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -1.78 Total: -51.87 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.43 kcal Total: -85.82 2.85 -82.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.795 kcal (2) G-P(sol) polarization free energy of solvation -85.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds