Wall clock time and date at job start Tue Mar 31 2020 11:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99974 * 3 2 1 6 6 H 1.48495 * 109.47429 * 59.99813 * 3 2 1 7 7 C 1.38897 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 162.78182 * 7 2 1 9 9 N 1.37142 * 119.99750 * 342.77852 * 7 2 1 10 10 C 1.34780 * 119.99460 * 160.83186 * 9 7 2 11 11 O 1.21279 * 119.99476 * 176.65687 * 10 9 7 12 12 C 1.50699 * 120.00432 * 356.92779 * 10 9 7 13 13 C 1.52469 * 108.78744 * 290.20655 * 12 10 9 14 14 C 1.54748 * 109.27651 * 175.68616 * 13 12 10 15 15 H 1.09000 * 114.64864 * 196.39785 * 14 13 12 16 16 C 1.54972 * 105.20143 * 322.91648 * 14 13 12 17 17 C 1.52454 * 111.72045 * 81.08236 * 16 14 13 18 18 C 1.54963 * 111.72142 * 0.02562 * 17 16 14 19 19 H 1.08991 * 114.36992 * 152.81594 * 18 17 16 20 20 C 1.52454 * 108.79413 * 166.80333 * 12 10 9 21 21 S 1.84396 * 105.03292 * 69.99382 * 14 13 12 22 22 C 1.39788 * 120.00372 * 340.83527 * 9 7 2 23 23 C 1.38959 * 120.07749 * 105.41995 * 22 9 7 24 24 C 1.38085 * 119.91844 * 179.74546 * 23 22 9 25 25 C 1.38307 * 120.07572 * 0.55975 * 24 23 22 26 26 C 1.38309 * 120.15939 * 359.69760 * 25 24 23 27 27 C 1.38082 * 120.07350 * 0.02562 * 26 25 24 28 28 H 0.97000 * 119.99893 * 5.03906 * 1 2 3 29 29 H 1.08997 * 108.75551 * 48.44362 * 12 10 9 30 30 H 1.08994 * 109.49985 * 295.62262 * 13 12 10 31 31 H 1.08999 * 109.50444 * 55.74491 * 13 12 10 32 32 H 1.09004 * 109.03790 * 320.49306 * 16 14 13 33 33 H 1.09001 * 108.94534 * 201.61947 * 16 14 13 34 34 H 1.09006 * 109.03895 * 239.40272 * 17 16 14 35 35 H 1.08996 * 108.94154 * 120.53323 * 17 16 14 36 36 H 1.09003 * 109.49830 * 304.25811 * 20 12 10 37 37 H 1.08999 * 109.50523 * 64.36547 * 20 12 10 38 38 H 1.07998 * 120.03928 * 0.02921 * 23 22 9 39 39 H 1.08000 * 119.96311 * 180.27930 * 24 23 22 40 40 H 1.08001 * 119.91933 * 179.72078 * 25 24 23 41 41 H 1.08002 * 119.95782 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.03341 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0087 -1.2029 0.0005 8 1 3.0524 -1.2240 -0.2763 9 7 1.3690 -2.3637 0.3527 10 6 1.8899 -3.5548 -0.0033 11 8 1.3575 -4.5822 0.3596 12 6 3.1373 -3.6098 -0.8471 13 6 2.8007 -3.1260 -2.2533 14 6 4.0953 -3.0744 -3.0994 15 1 4.0175 -2.4864 -4.0139 16 6 5.1998 -2.5955 -2.1234 17 6 5.7295 -3.7393 -1.2658 18 6 5.0240 -5.0787 -1.5969 19 1 5.6254 -5.9653 -1.3964 20 6 3.6839 -5.0328 -0.8235 21 16 4.5632 -4.8380 -3.3658 22 6 0.1768 -2.3118 1.0808 23 6 -1.0348 -2.5732 0.4526 24 6 -2.2099 -2.5261 1.1761 25 6 -2.1831 -2.2079 2.5218 26 6 -0.9795 -1.9418 3.1490 27 6 0.2000 -1.9927 2.4330 28 1 -0.4850 0.8368 -0.0738 29 1 3.8818 -2.9404 -0.4162 30 1 2.0917 -3.8134 -2.7145 31 1 2.3608 -2.1301 -2.1999 32 1 4.7888 -1.8238 -1.4725 33 1 6.0225 -2.1727 -2.7000 34 1 5.5657 -3.5010 -0.2148 35 1 6.7994 -3.8480 -1.4428 36 1 3.8485 -5.3422 0.2087 37 1 2.9680 -5.7055 -1.2957 38 1 -1.0568 -2.8175 -0.5992 39 1 -3.1516 -2.7337 0.6896 40 1 -3.1042 -2.1673 3.0842 41 1 -0.9623 -1.6940 4.2001 42 1 1.1396 -1.7852 2.9235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:31 Heat of formation + Delta-G solvation = 8.284459 kcal Electronic energy + Delta-G solvation = -25510.051800 eV Core-core repulsion = 22160.411097 eV Total energy + Delta-G solvation = -3349.640702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09200 -38.51158 -36.88226 -34.83184 -31.81538 -31.55067 -31.39818 -29.91391 -28.83959 -25.85573 -25.00172 -24.01702 -22.01717 -21.54766 -20.02516 -19.80774 -18.89784 -17.78518 -17.19124 -16.58359 -15.55997 -14.95213 -14.81697 -14.44379 -14.24087 -13.97986 -13.48118 -13.33041 -13.27974 -12.95062 -12.67991 -12.50209 -12.44386 -12.02626 -11.78125 -11.64557 -11.59314 -11.32681 -11.21684 -11.09324 -10.75936 -10.55726 -10.44949 -10.31015 -10.19244 -10.12939 -10.01609 -9.47799 -9.32515 -8.55610 -8.20873 -7.89542 -7.53355 -7.38633 -6.34352 -4.09145 2.13359 2.42557 2.48142 2.49748 3.00937 3.12459 3.14771 3.69156 3.95293 4.41570 4.60440 4.79695 4.92293 4.97964 5.04168 5.08080 5.33126 5.37946 5.42049 5.51806 5.63517 5.76770 5.86996 5.95759 5.97780 6.00679 6.06155 6.10057 6.22432 6.29663 6.36309 6.42366 6.44605 6.53495 6.74998 6.79371 6.82359 7.01392 7.27012 7.31360 7.42720 7.59572 7.72944 7.94266 8.37491 8.93693 9.31557 9.75618 10.54132 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.005610 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.710516 B = 4990.181448 C = 6137.442401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.353 4.353 8 H 0.101 0.899 9 N -0.411 5.411 10 C 0.470 3.530 11 O -0.593 6.593 12 C -0.093 4.093 13 C -0.106 4.106 14 C -0.021 4.021 15 H 0.122 0.878 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.028 4.028 19 H 0.121 0.879 20 C -0.094 4.094 21 S -0.328 6.328 22 C 0.235 3.765 23 C -0.068 4.068 24 C -0.122 4.122 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.124 4.124 28 H 0.272 0.728 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 -1.781 -1.304 6.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.478 4.478 8 H 0.119 0.881 9 N -0.127 5.127 10 C 0.260 3.740 11 O -0.478 6.478 12 C -0.114 4.114 13 C -0.145 4.145 14 C -0.149 4.149 15 H 0.140 0.860 16 C -0.165 4.165 17 C -0.161 4.161 18 C -0.156 4.156 19 H 0.139 0.861 20 C -0.134 4.134 21 S -0.101 6.101 22 C 0.144 3.856 23 C -0.088 4.088 24 C -0.140 4.140 25 C -0.165 4.165 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.798 -2.870 -2.079 6.795 hybrid contribution 0.362 1.969 0.858 2.178 sum 6.161 -0.900 -1.221 6.345 Atomic orbital electron populations 1.69923 1.05795 1.27878 1.44177 1.25249 0.95337 0.99560 0.95929 0.86088 0.79812 0.82033 0.78138 1.19186 1.20616 1.20494 1.19523 0.95507 0.83381 1.49439 0.88095 1.41312 1.19929 1.05604 1.45893 1.20178 0.87547 0.82976 0.83268 1.90572 1.64373 1.33694 1.59150 1.21057 0.96954 0.97232 0.96133 1.22018 0.95340 1.04408 0.92756 1.24608 0.98300 0.91524 1.00479 0.85986 1.22327 0.97577 0.98898 0.97663 1.22291 1.00092 0.92725 1.00982 1.24600 0.99384 1.00317 0.91323 0.86126 1.21894 0.94098 0.97101 1.00277 1.87903 1.86984 1.18316 1.16900 1.17158 0.86061 0.93085 0.89262 1.20802 0.91575 0.98026 0.98372 1.20705 0.97093 1.01962 0.94283 1.20741 0.96890 1.03808 0.95060 1.20669 0.92664 1.02283 0.98608 1.20971 0.97523 1.02066 0.93847 0.91723 0.88522 0.91111 0.87908 0.89494 0.91430 0.90258 0.91471 0.90966 0.90117 0.87731 0.87594 0.87781 0.87644 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.81 10.65 55.49 0.59 -20.22 16 2 C 0.05 1.11 5.20 -17.48 -0.09 1.02 16 3 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.35 -8.05 7.43 -14.93 -0.11 -8.16 16 8 H 0.10 2.13 5.37 -52.49 -0.28 1.85 16 9 N -0.41 -9.71 2.66 -58.98 -0.16 -9.86 16 10 C 0.47 10.67 6.78 -10.98 -0.07 10.59 16 11 O -0.59 -15.13 15.91 5.56 0.09 -15.04 16 12 C -0.09 -1.67 1.22 -92.32 -0.11 -1.78 16 13 C -0.11 -1.81 4.46 -26.08 -0.12 -1.93 16 14 C -0.02 -0.30 4.87 -24.77 -0.12 -0.42 16 15 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 16 C -0.13 -1.62 5.21 -25.97 -0.14 -1.75 16 17 C -0.12 -1.50 5.21 -25.97 -0.14 -1.64 16 18 C -0.03 -0.38 4.88 -24.75 -0.12 -0.50 16 19 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 20 C -0.09 -1.55 3.98 -26.06 -0.10 -1.65 16 21 S -0.33 -4.94 21.98 -107.50 -2.36 -7.31 16 22 C 0.24 5.66 2.40 -83.70 -0.20 5.45 16 23 C -0.07 -1.59 8.72 -39.37 -0.34 -1.94 16 24 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 25 C -0.15 -2.81 10.04 -39.53 -0.40 -3.21 16 26 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 27 C -0.12 -2.81 9.92 -39.37 -0.39 -3.20 16 28 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 29 H 0.10 1.66 3.11 -51.93 -0.16 1.50 16 30 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 31 H 0.10 1.93 6.32 -51.93 -0.33 1.60 16 32 H 0.09 1.19 6.08 -51.93 -0.32 0.87 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.98 6.77 -51.93 -0.35 0.63 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 37 H 0.08 1.47 7.95 -51.93 -0.41 1.06 16 38 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -27.52 335.44 -10.69 -38.21 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.63 Total: 10.76 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.25 Total: -14.84 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.43 Total: -30.08 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.36 Total: -7.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.52 -10.69 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.494 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds