Wall clock time and date at job start Tue Mar 31 2020 11:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99974 * 3 2 1 6 6 H 1.48495 * 109.47429 * 59.99813 * 3 2 1 7 7 C 1.38897 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 162.78182 * 7 2 1 9 9 N 1.37142 * 119.99750 * 342.77852 * 7 2 1 10 10 C 1.34780 * 119.99460 * 160.83186 * 9 7 2 11 11 O 1.21279 * 119.99476 * 176.65687 * 10 9 7 12 12 C 1.50699 * 120.00432 * 356.92779 * 10 9 7 13 13 C 1.52469 * 108.78744 * 290.20655 * 12 10 9 14 14 C 1.54748 * 109.27651 * 175.68616 * 13 12 10 15 15 H 1.09000 * 114.64864 * 196.39785 * 14 13 12 16 16 C 1.54972 * 105.20143 * 322.91648 * 14 13 12 17 17 C 1.52454 * 111.72045 * 81.08236 * 16 14 13 18 18 C 1.54963 * 111.72142 * 0.02562 * 17 16 14 19 19 H 1.08991 * 114.36992 * 152.81594 * 18 17 16 20 20 C 1.52454 * 108.79413 * 166.80333 * 12 10 9 21 21 S 1.84396 * 105.03292 * 69.99382 * 14 13 12 22 22 C 1.39788 * 120.00372 * 340.83527 * 9 7 2 23 23 C 1.38959 * 120.07749 * 105.41995 * 22 9 7 24 24 C 1.38085 * 119.91844 * 179.74546 * 23 22 9 25 25 C 1.38307 * 120.07572 * 0.55975 * 24 23 22 26 26 C 1.38309 * 120.15939 * 359.69760 * 25 24 23 27 27 C 1.38082 * 120.07350 * 0.02562 * 26 25 24 28 28 H 0.97000 * 119.99893 * 5.03906 * 1 2 3 29 29 H 1.08997 * 108.75551 * 48.44362 * 12 10 9 30 30 H 1.08994 * 109.49985 * 295.62262 * 13 12 10 31 31 H 1.08999 * 109.50444 * 55.74491 * 13 12 10 32 32 H 1.09004 * 109.03790 * 320.49306 * 16 14 13 33 33 H 1.09001 * 108.94534 * 201.61947 * 16 14 13 34 34 H 1.09006 * 109.03895 * 239.40272 * 17 16 14 35 35 H 1.08996 * 108.94154 * 120.53323 * 17 16 14 36 36 H 1.09003 * 109.49830 * 304.25811 * 20 12 10 37 37 H 1.08999 * 109.50523 * 64.36547 * 20 12 10 38 38 H 1.07998 * 120.03928 * 0.02921 * 23 22 9 39 39 H 1.08000 * 119.96311 * 180.27930 * 24 23 22 40 40 H 1.08001 * 119.91933 * 179.72078 * 25 24 23 41 41 H 1.08002 * 119.95782 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.03341 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0087 -1.2029 0.0005 8 1 3.0524 -1.2240 -0.2763 9 7 1.3690 -2.3637 0.3527 10 6 1.8899 -3.5548 -0.0033 11 8 1.3575 -4.5822 0.3596 12 6 3.1373 -3.6098 -0.8471 13 6 2.8007 -3.1260 -2.2533 14 6 4.0953 -3.0744 -3.0994 15 1 4.0175 -2.4864 -4.0139 16 6 5.1998 -2.5955 -2.1234 17 6 5.7295 -3.7393 -1.2658 18 6 5.0240 -5.0787 -1.5969 19 1 5.6254 -5.9653 -1.3964 20 6 3.6839 -5.0328 -0.8235 21 16 4.5632 -4.8380 -3.3658 22 6 0.1768 -2.3118 1.0808 23 6 -1.0348 -2.5732 0.4526 24 6 -2.2099 -2.5261 1.1761 25 6 -2.1831 -2.2079 2.5218 26 6 -0.9795 -1.9418 3.1490 27 6 0.2000 -1.9927 2.4330 28 1 -0.4850 0.8368 -0.0738 29 1 3.8818 -2.9404 -0.4162 30 1 2.0917 -3.8134 -2.7145 31 1 2.3608 -2.1301 -2.1999 32 1 4.7888 -1.8238 -1.4725 33 1 6.0225 -2.1727 -2.7000 34 1 5.5657 -3.5010 -0.2148 35 1 6.7994 -3.8480 -1.4428 36 1 3.8485 -5.3422 0.2087 37 1 2.9680 -5.7055 -1.2957 38 1 -1.0568 -2.8175 -0.5992 39 1 -3.1516 -2.7337 0.6896 40 1 -3.1042 -2.1673 3.0842 41 1 -0.9623 -1.6940 4.2001 42 1 1.1396 -1.7852 2.9235 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888564150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:30 Heat of formation + Delta-G solvation = -3.724850 kcal Electronic energy + Delta-G solvation = -25510.572562 eV Core-core repulsion = 22160.411097 eV Total energy + Delta-G solvation = -3350.161465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67392 -39.99339 -38.48456 -36.61136 -33.55953 -32.86747 -32.68882 -31.57752 -30.46135 -27.23191 -26.73985 -25.25290 -23.59884 -23.21757 -21.59280 -20.91074 -20.52229 -19.36757 -18.61909 -17.95645 -17.22305 -16.59985 -16.46132 -16.13560 -15.62618 -15.42055 -14.91041 -14.82607 -14.57006 -14.45146 -14.12054 -14.06524 -13.88147 -13.41779 -13.30211 -13.25626 -12.96235 -12.87326 -12.72134 -12.52842 -12.21015 -12.04887 -11.95086 -11.88322 -11.59554 -11.42253 -11.22134 -11.14934 -10.60377 -10.32349 -9.98550 -9.57675 -9.25179 -8.60921 -8.10687 -5.91273 0.75656 0.80893 0.98345 1.34950 1.40090 1.49157 1.58811 1.95087 2.28356 2.84289 3.08531 3.27420 3.44752 3.71653 3.81331 3.95686 4.08124 4.16287 4.20888 4.22704 4.27301 4.28111 4.34793 4.38412 4.68029 4.71554 4.78209 4.88576 4.88826 4.94722 4.99956 5.08767 5.11115 5.16066 5.23263 5.33811 5.34370 5.38743 5.51018 5.66040 5.77549 5.87354 6.01742 6.26123 6.60321 7.13774 7.54513 7.97896 8.76784 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.005610 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.710516 B = 4990.181448 C = 6137.442401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.289 1.289 7 C -0.358 4.358 8 H 0.117 0.883 9 N -0.419 5.419 10 C 0.454 3.546 11 O -0.632 6.632 12 C -0.080 4.080 13 C -0.098 4.098 14 C -0.011 4.011 15 H 0.139 0.861 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.014 4.014 19 H 0.146 0.854 20 C -0.090 4.090 21 S -0.354 6.354 22 C 0.208 3.792 23 C -0.097 4.097 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.120 4.120 27 C -0.149 4.149 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -0.809 -0.721 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.171 1.171 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.483 4.483 8 H 0.134 0.866 9 N -0.134 5.134 10 C 0.246 3.754 11 O -0.520 6.520 12 C -0.101 4.101 13 C -0.138 4.138 14 C -0.140 4.140 15 H 0.157 0.843 16 C -0.164 4.164 17 C -0.160 4.160 18 C -0.142 4.142 19 H 0.164 0.836 20 C -0.130 4.130 21 S -0.126 6.126 22 C 0.118 3.882 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.160 4.160 26 C -0.139 4.139 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.415 -1.897 -1.503 7.800 hybrid contribution -0.269 1.616 0.708 1.785 sum 7.145 -0.281 -0.795 7.195 Atomic orbital electron populations 1.70088 1.07182 1.28064 1.45328 1.26009 0.95944 1.02275 0.95545 0.85136 0.79712 0.78001 0.77262 1.17129 1.20792 1.21543 1.19901 0.96149 0.83265 1.49009 0.86564 1.41581 1.19960 1.06132 1.45683 1.21064 0.88791 0.82297 0.83275 1.90523 1.65917 1.34826 1.60720 1.21040 0.94842 0.98636 0.95571 1.21882 0.96684 1.02430 0.92799 1.24636 0.96875 0.91397 1.01045 0.84283 1.22357 0.97655 0.98923 0.97467 1.22315 1.01491 0.91370 1.00837 1.24684 0.97763 1.02440 0.89277 0.83630 1.21819 0.95390 0.95341 1.00431 1.88040 1.87019 1.19278 1.18307 1.17485 0.86434 0.94098 0.90213 1.20804 0.92983 1.00265 0.97631 1.21072 0.97076 1.00859 0.95161 1.21200 0.98337 1.01918 0.94572 1.21110 0.91945 1.00629 1.00180 1.21138 0.98676 1.03412 0.93651 0.92252 0.87163 0.93488 0.89810 0.90215 0.88930 0.90155 0.88721 0.91273 0.92719 0.90219 0.84987 0.83565 0.84162 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.97 10.65 21.65 0.23 -43.74 16 2 C 0.01 0.35 5.20 84.91 0.44 0.79 16 3 Si 0.97 37.10 29.59 68.60 2.03 39.13 16 4 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.29 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.36 -16.54 7.43 84.02 0.62 -15.92 16 8 H 0.12 4.85 5.37 -2.91 -0.02 4.84 16 9 N -0.42 -20.49 2.66 -458.89 -1.22 -21.71 16 10 C 0.45 21.54 6.78 87.66 0.59 22.13 16 11 O -0.63 -34.05 15.91 -3.03 -0.05 -34.10 16 12 C -0.08 -2.93 1.22 -11.90 -0.01 -2.94 16 13 C -0.10 -3.44 4.46 31.01 0.14 -3.30 16 14 C -0.01 -0.31 4.87 31.86 0.16 -0.16 16 15 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 16 C -0.13 -2.87 5.21 31.09 0.16 -2.70 16 17 C -0.12 -2.61 5.21 31.08 0.16 -2.45 16 18 C -0.01 -0.34 4.88 31.88 0.16 -0.19 16 19 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 20 C -0.09 -2.99 3.98 31.03 0.12 -2.86 16 21 S -0.35 -10.20 21.98 -56.49 -1.24 -11.44 16 22 C 0.21 10.38 2.40 38.22 0.09 10.47 16 23 C -0.10 -4.73 8.72 22.41 0.20 -4.54 16 24 C -0.12 -5.00 10.04 22.25 0.22 -4.78 16 25 C -0.14 -5.17 10.04 22.30 0.22 -4.95 16 26 C -0.12 -4.62 10.04 22.25 0.22 -4.40 16 27 C -0.15 -6.82 9.92 22.40 0.22 -6.60 16 28 H 0.27 13.08 8.32 -92.71 -0.77 12.31 16 29 H 0.11 3.71 3.11 -2.39 -0.01 3.71 16 30 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 31 H 0.08 3.24 6.32 -2.39 -0.02 3.23 16 32 H 0.08 1.97 6.08 -2.38 -0.01 1.96 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.76 6.77 -2.38 -0.02 1.74 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 37 H 0.05 2.08 7.95 -2.39 -0.02 2.06 16 38 H 0.08 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -62.40 335.44 4.50 -57.90 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 1.03 Total: 36.36 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.72 Total: -22.39 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.99 Total: -65.45 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.05 Total: -34.10 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: -10.20 SS G_CDS: -1.24 Total: -11.44 kcal Total: -62.40 4.50 -57.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.173 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds