Wall clock time and date at job start Tue Mar 31 2020 11:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30793 * 1 3 3 Si 1.86796 * 119.99762 * 2 1 4 4 H 1.48504 * 109.47405 * 270.00450 * 3 2 1 5 5 H 1.48498 * 109.47061 * 30.00447 * 3 2 1 6 6 H 1.48501 * 109.47357 * 150.00485 * 3 2 1 7 7 C 1.40047 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00026 * 190.50811 * 7 2 1 9 9 C 1.40843 * 119.99895 * 10.51930 * 7 2 1 10 10 C 1.41111 * 120.72600 * 29.22030 * 9 7 2 11 11 C 1.36878 * 118.40433 * 179.97438 * 10 9 7 12 12 C 1.38886 * 119.81514 * 0.28467 * 11 10 9 13 13 N 1.31733 * 121.51237 * 359.40995 * 12 11 10 14 14 C 1.32654 * 121.70845 * 0.59888 * 13 12 11 15 15 C 1.47629 * 119.99487 * 179.67885 * 14 13 12 16 16 C 1.39712 * 120.19249 * 229.60778 * 15 14 13 17 17 C 1.37825 * 119.90555 * 180.02562 * 16 15 14 18 18 C 1.38550 * 120.29568 * 0.02562 * 17 16 15 19 19 C 1.38146 * 120.39112 * 0.02562 * 18 17 16 20 20 C 1.38620 * 120.08962 * 359.67838 * 19 18 17 21 21 O 1.35723 * 120.14782 * 180.29835 * 20 19 18 22 22 C 1.35871 * 118.00050 * 266.26534 * 21 20 19 23 23 C 1.38766 * 120.05862 * 355.03091 * 22 21 20 24 24 C 1.38136 * 119.94094 * 179.76682 * 23 22 21 25 25 C 1.38276 * 120.05936 * 0.49468 * 24 23 22 26 26 C 1.38271 * 120.11709 * 359.78075 * 25 24 23 27 27 C 1.38137 * 120.05864 * 359.96571 * 26 25 24 28 28 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.80295 * 359.95996 * 10 9 7 30 30 H 1.07994 * 120.09408 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.24583 * 179.70227 * 12 11 10 32 32 H 1.08001 * 120.04701 * 359.97438 * 16 15 14 33 33 H 1.08005 * 119.85075 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.80006 * 180.02562 * 18 17 16 35 35 H 1.08009 * 119.95231 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.02969 * 0.02629 * 23 22 21 37 37 H 1.08001 * 119.97120 * 180.25376 * 24 23 22 38 38 H 1.07998 * 119.94086 * 179.76181 * 25 24 23 39 39 H 1.07997 * 119.97266 * 179.97438 * 26 25 24 40 40 H 1.07995 * 120.03020 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4893 2.0466 -1.4001 5 1 1.4393 2.6526 0.7001 6 1 3.5395 1.4403 0.6999 7 6 2.0082 -1.2128 -0.0005 8 1 3.0745 -1.2207 0.1700 9 6 1.3218 -2.4222 -0.2238 10 6 0.1549 -2.4532 -1.0166 11 6 -0.4741 -3.6545 -1.2028 12 6 0.0386 -4.8015 -0.6108 13 7 1.1316 -4.7675 0.1237 14 6 1.7890 -3.6365 0.3436 15 6 3.0063 -3.6408 1.1788 16 6 3.1482 -2.7186 2.2187 17 6 4.2874 -2.7276 2.9944 18 6 5.2939 -3.6472 2.7475 19 6 5.1668 -4.5639 1.7218 20 6 4.0252 -4.5732 0.9356 21 8 3.8965 -5.4773 -0.0685 22 6 4.2820 -5.1035 -1.3167 23 6 4.6922 -3.7997 -1.5562 24 6 5.0882 -3.4236 -2.8250 25 6 5.0665 -4.3423 -3.8582 26 6 4.6528 -5.6406 -3.6235 27 6 4.2607 -6.0234 -2.3554 28 1 -0.4850 0.8400 0.0004 29 1 -0.2328 -1.5507 -1.4656 30 1 -1.3690 -3.7097 -1.8049 31 1 -0.4678 -5.7437 -0.7598 32 1 2.3667 -1.9992 2.4138 33 1 4.3964 -2.0140 3.7977 34 1 6.1830 -3.6473 3.3606 35 1 5.9556 -5.2779 1.5359 36 1 4.7058 -3.0807 -0.7504 37 1 5.4114 -2.4100 -3.0110 38 1 5.3728 -4.0451 -4.8502 39 1 4.6363 -6.3562 -4.4322 40 1 3.9373 -7.0374 -2.1727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241795310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:38 Heat of formation + Delta-G solvation = 48.296363 kcal Electronic energy + Delta-G solvation = -26133.406534 eV Core-core repulsion = 22650.056927 eV Total energy + Delta-G solvation = -3483.349607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.116 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.38955 -38.61670 -37.78934 -36.62790 -34.19150 -31.88702 -30.76598 -30.63210 -30.11239 -29.12146 -28.34768 -25.72786 -23.29415 -22.69667 -22.17084 -21.71705 -20.92693 -20.20633 -18.10084 -17.44878 -16.53395 -16.05757 -15.63649 -15.47174 -15.35870 -14.58832 -14.37858 -14.06513 -13.88886 -13.58639 -13.22515 -13.04623 -12.94484 -12.72801 -12.36992 -12.02238 -11.77632 -11.60015 -11.50957 -11.42617 -11.25711 -11.18443 -11.08988 -10.71086 -10.55166 -10.38042 -9.86946 -9.50482 -8.66806 -8.60539 -8.27306 -8.11150 -8.07589 -7.75874 -7.42098 -6.93033 -4.60322 1.56481 1.72052 1.79513 1.84881 2.58144 2.90680 2.95132 2.97797 3.13583 3.74250 3.75504 4.17396 4.36194 4.52226 5.22821 5.25880 5.32101 5.35570 5.40980 5.48880 5.64066 5.72301 5.73781 5.81777 5.93685 6.06438 6.18404 6.22590 6.34544 6.42326 6.52341 6.66309 6.69375 6.73593 6.79982 6.83863 6.87585 6.93685 6.98005 7.12909 7.17510 7.22791 7.39403 7.65753 7.76789 7.84778 8.20639 8.31809 8.54218 8.61390 9.56021 9.94943 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.006312 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.711457 B = 4434.619914 C = 4896.666383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.440 4.440 8 H 0.084 0.916 9 C 0.092 3.908 10 C -0.127 4.127 11 C -0.148 4.148 12 C -0.028 4.028 13 N -0.436 5.436 14 C 0.009 3.991 15 C 0.024 3.976 16 C -0.084 4.084 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.133 4.133 20 C 0.078 3.922 21 O -0.240 6.240 22 C 0.143 3.857 23 C -0.184 4.184 24 C -0.081 4.081 25 C -0.166 4.166 26 C -0.089 4.089 27 C -0.154 4.154 28 H 0.285 0.715 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.033 -2.397 -1.442 8.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.102 0.898 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.169 4.169 12 C -0.190 4.190 13 N -0.143 5.143 14 C -0.128 4.128 15 C 0.023 3.977 16 C -0.103 4.103 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.151 4.151 20 C 0.035 3.965 21 O -0.151 6.151 22 C 0.099 3.901 23 C -0.202 4.202 24 C -0.100 4.100 25 C -0.184 4.184 26 C -0.107 4.107 27 C -0.173 4.173 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.116 0.884 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.045 -3.180 -1.017 8.710 hybrid contribution -0.270 1.796 -0.418 1.864 sum 7.775 -1.383 -1.434 8.027 Atomic orbital electron populations 1.69744 1.07609 1.29740 1.34337 1.25973 0.94835 1.01474 0.92183 0.86267 0.80628 0.80197 0.79641 1.19083 1.20016 1.18138 1.19505 0.96118 0.89978 1.41301 0.89782 1.18292 0.91799 0.92352 0.88842 1.21414 0.97779 0.96726 0.99355 1.21468 0.99762 0.94689 1.00944 1.21687 0.96623 0.96807 1.03842 1.67112 1.06080 1.28738 1.12404 1.19311 0.98391 0.90080 1.05035 1.18835 0.92532 0.92234 0.94131 1.21357 0.97898 0.98010 0.93064 1.21075 0.94191 0.99098 0.99929 1.20850 0.99319 0.96250 0.98343 1.21089 0.96429 0.99947 0.97674 1.18724 0.94133 0.92934 0.90699 1.84344 1.79039 1.38248 1.13471 1.19223 0.93330 0.92936 0.84579 1.21355 1.04540 0.95427 0.98918 1.20910 0.97681 0.99130 0.92242 1.20947 1.04645 0.93948 0.98896 1.20820 0.98110 0.96215 0.95568 1.20338 1.06024 0.99490 0.91423 0.90429 0.85509 0.88365 0.86217 0.84573 0.86212 0.86290 0.86138 0.85377 0.86175 0.86495 0.85948 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.87 10.90 55.55 0.61 -18.26 16 2 C 0.07 1.71 5.27 -17.32 -0.09 1.62 16 3 Si 0.91 17.39 29.57 -169.99 -5.03 12.37 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.62 7.02 -37.92 -0.27 -10.89 16 8 H 0.08 1.99 6.75 -52.49 -0.35 1.63 16 9 C 0.09 2.32 5.55 -106.40 -0.59 1.73 16 10 C -0.13 -3.17 8.71 -38.99 -0.34 -3.51 16 11 C -0.15 -3.42 10.03 -39.83 -0.40 -3.82 16 12 C -0.03 -0.65 11.16 -17.35 -0.19 -0.85 16 13 N -0.44 -10.89 9.68 -9.19 -0.09 -10.98 16 14 C 0.01 0.23 5.96 -82.26 -0.49 -0.26 16 15 C 0.02 0.53 4.50 -104.76 -0.47 0.06 16 16 C -0.08 -1.68 8.04 -39.18 -0.31 -1.99 16 17 C -0.12 -2.03 10.03 -39.62 -0.40 -2.43 16 18 C -0.13 -1.97 10.03 -39.50 -0.40 -2.36 16 19 C -0.13 -2.26 9.98 -39.47 -0.39 -2.66 16 20 C 0.08 1.59 4.16 -38.69 -0.16 1.43 16 21 O -0.24 -5.06 9.00 -2.98 -0.03 -5.09 16 22 C 0.14 2.80 6.53 -39.19 -0.26 2.54 16 23 C -0.18 -3.51 9.12 -39.42 -0.36 -3.87 16 24 C -0.08 -1.35 10.04 -39.60 -0.40 -1.75 16 25 C -0.17 -2.47 10.04 -39.56 -0.40 -2.87 16 26 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 27 C -0.15 -2.65 9.99 -39.42 -0.39 -3.05 16 28 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 29 H 0.13 3.21 6.35 -52.49 -0.33 2.87 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 32 H 0.14 2.82 7.27 -52.49 -0.38 2.44 16 33 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.13 2.59 6.47 -52.49 -0.34 2.25 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -27.86 344.32 -10.40 -38.27 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -4.35 Total: 13.13 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -6.71 Total: -34.63 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.52 Total: -29.24 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.03 Total: -5.09 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.86 -10.40 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241795310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.562 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds