Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36044 * 116.99951 * 2 1 4 4 C 1.38611 * 119.97076 * 359.97438 * 3 2 1 5 5 C 1.38451 * 120.36580 * 180.02562 * 4 3 2 6 6 C 1.38084 * 120.29900 * 359.97438 * 5 4 3 7 7 F 1.35101 * 120.02962 * 180.02562 * 6 5 4 8 8 C 1.39979 * 119.93689 * 0.02562 * 6 5 4 9 9 C 1.47572 * 120.18330 * 179.97438 * 8 6 5 10 10 N 1.32672 * 120.00096 * 236.30777 * 9 8 6 11 11 C 1.31733 * 121.70501 * 179.97438 * 10 9 8 12 12 C 1.50709 * 119.24106 * 180.02562 * 11 10 9 13 13 C 1.38878 * 121.51841 * 0.02562 * 11 10 9 14 14 C 1.36876 * 119.82135 * 359.97438 * 13 11 10 15 15 C 1.41104 * 118.40749 * 359.97438 * 14 13 11 16 16 C 1.40830 * 120.72816 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00746 * 207.72376 * 16 15 14 18 18 C 1.40053 * 119.99453 * 27.72847 * 16 15 14 19 19 N 1.30797 * 119.99899 * 12.21870 * 18 16 15 20 20 Si 1.86801 * 119.99759 * 192.22036 * 18 16 15 21 21 H 1.48502 * 109.47053 * 89.99780 * 20 18 16 22 22 H 1.48501 * 109.47115 * 209.99808 * 20 18 16 23 23 H 1.48508 * 109.47311 * 329.99977 * 20 18 16 24 24 C 1.38933 * 119.97053 * 180.27775 * 3 2 1 25 25 O 1.35848 * 120.14781 * 359.97438 * 24 3 2 26 26 C 1.42903 * 117.00248 * 270.23327 * 25 24 3 27 27 H 1.09001 * 109.47044 * 60.00709 * 1 2 3 28 28 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47385 * 300.01099 * 1 2 3 30 30 H 1.07995 * 119.81502 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.84414 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46780 * 90.00210 * 12 11 10 33 33 H 1.09002 * 109.46844 * 210.00181 * 12 11 10 34 34 H 1.08997 * 109.46899 * 329.99769 * 12 11 10 35 35 H 1.08001 * 120.08794 * 179.97438 * 13 11 10 36 36 H 1.08001 * 120.79431 * 179.97438 * 14 13 11 37 37 H 0.97003 * 119.99402 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.46743 * 300.00303 * 26 25 24 39 39 H 1.09003 * 109.46811 * 59.99602 * 26 25 24 40 40 H 1.08997 * 109.47306 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2910 2.3743 -0.0005 5 6 1.9110 3.6122 -0.0011 6 6 3.2890 3.7012 -0.0005 7 9 3.8883 4.9120 -0.0006 8 6 4.0643 2.5357 0.0000 9 6 5.5373 2.6244 0.0000 10 7 6.2379 2.0277 -0.9557 11 6 7.5535 2.0856 -0.9886 12 6 8.2936 1.3875 -2.1004 13 6 8.2742 2.7751 -0.0222 14 6 7.6142 3.4138 0.9926 15 6 6.2049 3.3493 1.0220 16 6 5.4765 3.9881 2.0440 17 1 4.5114 3.6044 2.3402 18 6 6.0037 5.1212 2.6763 19 7 7.0457 5.7276 2.1692 20 14 5.2185 5.7662 4.2438 21 1 5.8560 5.1197 5.4189 22 1 5.4090 7.2368 4.3239 23 1 3.7665 5.4548 4.2346 24 6 3.4340 1.2842 -0.0058 25 8 4.1762 0.1464 -0.0110 26 6 4.5319 -0.4021 1.2597 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 0.2128 2.3137 -0.0014 31 1 1.3142 4.5122 -0.0019 32 1 8.4202 2.0726 -2.9387 33 1 9.2719 1.0681 -1.7412 34 1 7.7239 0.5169 -2.4254 35 1 9.3527 2.8073 -0.0714 36 1 8.1590 3.9543 1.7525 37 1 7.4110 6.5122 2.6074 38 1 5.1177 0.3273 1.8191 39 1 3.6269 -0.6452 1.8166 40 1 5.1217 -1.3068 1.1128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244589513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = -65.716304 kcal Electronic energy + Delta-G solvation = -27284.560572 eV Core-core repulsion = 23365.497780 eV Total energy + Delta-G solvation = -3919.062792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.84373 -40.01312 -38.54588 -37.49765 -36.09929 -34.31364 -32.08670 -30.83045 -29.60516 -28.96255 -27.74243 -27.07589 -26.26274 -24.40012 -22.73534 -21.79327 -20.76719 -20.28566 -17.85805 -17.37460 -17.13507 -16.73338 -15.81525 -15.57020 -15.30717 -14.89976 -14.72715 -14.41820 -14.31202 -14.17255 -13.89137 -13.84568 -13.11397 -12.77505 -12.56299 -12.39522 -12.00233 -11.86053 -11.78101 -11.62358 -11.49810 -11.48105 -11.34044 -11.05279 -10.96315 -10.69705 -10.53341 -10.40756 -9.87974 -9.43625 -9.41903 -8.58802 -8.10680 -8.01619 -7.56420 -7.34062 -6.89566 -4.53733 1.45083 1.69575 2.56026 2.90102 2.97349 3.00995 3.15240 3.47398 3.79331 3.83436 4.37367 4.52767 4.92278 5.11128 5.20174 5.23984 5.25383 5.44585 5.51464 5.55347 5.78654 5.83835 5.91282 5.92886 6.08050 6.14694 6.17400 6.35686 6.44099 6.47149 6.55040 6.59772 6.71247 6.85691 6.98152 7.03467 7.13519 7.24792 7.49023 7.66260 7.78158 7.90035 8.14917 8.34013 8.57637 8.64573 9.61313 9.98108 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.006789 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.842415 B = 4123.302300 C = 5678.996199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.087 3.913 4 C -0.189 4.189 5 C -0.134 4.134 6 C 0.102 3.898 7 F -0.118 7.118 8 C 0.013 3.987 9 C 0.011 3.989 10 N -0.427 5.427 11 C -0.008 4.008 12 C -0.073 4.073 13 C -0.140 4.140 14 C -0.126 4.126 15 C 0.089 3.911 16 C -0.429 4.429 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.782 5.782 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.259 1.259 24 C 0.099 3.901 25 O -0.306 6.306 26 C 0.041 3.959 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.285 0.715 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -5.218 0.297 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.208 4.208 5 C -0.153 4.153 6 C 0.082 3.918 7 F -0.096 7.096 8 C 0.010 3.990 9 C -0.127 4.127 10 N -0.135 5.135 11 C -0.151 4.151 12 C -0.131 4.131 13 C -0.161 4.161 14 C -0.152 4.152 15 C 0.084 3.916 16 C -0.458 4.458 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.406 5.406 20 Si 0.733 3.267 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.182 1.182 24 C 0.053 3.947 25 O -0.221 6.221 26 C -0.054 4.054 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.219 -5.704 -0.460 10.015 hybrid contribution -0.025 1.439 1.628 2.173 sum -8.244 -4.265 1.168 9.355 Atomic orbital electron populations 1.23004 0.79364 1.03402 1.01066 1.86155 1.20441 1.26381 1.89224 1.19242 0.91295 0.84631 1.00631 1.20739 0.99487 0.91013 1.09525 1.20741 0.92619 0.98234 1.03671 1.17517 0.89775 0.80793 1.03759 1.91561 1.83931 1.40724 1.93357 1.18614 0.93057 0.89942 0.97353 1.18883 0.89359 1.08501 0.95968 1.66888 1.07645 1.15730 1.23199 1.20266 0.89470 1.05771 0.99587 1.20274 0.97862 0.99064 0.95869 1.21278 0.98775 0.99325 0.96678 1.21398 0.94162 1.00539 0.99131 1.18265 0.92375 0.89857 0.91080 1.19450 1.03849 1.08314 1.14198 0.90266 1.25946 0.94242 0.95973 0.98017 1.69753 1.19201 1.15779 1.35888 0.86262 0.80872 0.78413 0.81130 1.19053 1.19902 1.18247 1.17746 0.85514 0.86290 1.05164 1.86065 1.70422 1.37422 1.28227 1.22869 0.99007 0.98330 0.85167 0.92880 0.88673 0.92974 0.84987 0.84889 0.93262 0.92991 0.92451 0.88323 0.85367 0.90407 0.93411 0.94325 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.95 10.28 -34.56 -0.36 -5.31 16 3 C 0.09 1.58 6.69 -39.19 -0.26 1.32 16 4 C -0.19 -2.97 9.03 -39.37 -0.36 -3.32 16 5 C -0.13 -2.32 10.00 -39.56 -0.40 -2.71 16 6 C 0.10 2.22 6.20 -38.99 -0.24 1.97 16 7 F -0.12 -2.81 15.16 2.25 0.03 -2.77 16 8 C 0.01 0.29 4.87 -104.73 -0.51 -0.22 16 9 C 0.01 0.27 5.71 -82.27 -0.47 -0.20 16 10 N -0.43 -10.84 9.90 -5.47 -0.05 -10.89 16 11 C -0.01 -0.19 6.79 -82.39 -0.56 -0.75 16 12 C -0.07 -1.37 10.15 36.01 0.37 -1.00 16 13 C -0.14 -3.26 9.64 -39.84 -0.38 -3.64 16 14 C -0.13 -3.20 8.72 -38.99 -0.34 -3.54 16 15 C 0.09 2.32 5.34 -106.40 -0.57 1.76 16 16 C -0.43 -10.89 6.62 -37.92 -0.25 -11.14 16 17 H 0.08 1.99 6.92 -52.49 -0.36 1.63 16 18 C 0.08 1.87 5.25 -17.31 -0.09 1.78 16 19 N -0.78 -19.29 10.89 55.55 0.60 -18.69 16 20 Si 0.91 18.09 29.58 -169.99 -5.03 13.06 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 C 0.10 2.10 5.74 -38.62 -0.22 1.88 16 25 O -0.31 -6.55 9.41 -33.94 -0.32 -6.87 16 26 C 0.04 0.73 11.13 101.05 1.12 1.86 16 27 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.13 1.57 6.27 -52.49 -0.33 1.24 16 31 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.13 3.26 6.30 -52.49 -0.33 2.93 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -30.03 344.36 -6.85 -36.88 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.75 Total: 4.09 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.17 Total: -14.69 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: 0.55 Total: -29.58 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.67 Total: -12.18 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.03 Total: -2.77 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.03 -6.85 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244589513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.837 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds