Wall clock time and date at job start Tue Mar 31 2020 11:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86804 * 120.00544 * 2 1 4 4 H 1.48498 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47083 * 300.00779 * 3 2 1 6 6 H 1.48499 * 109.46643 * 60.00236 * 3 2 1 7 7 C 1.38637 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00158 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.35780 * 117.00068 * 174.96281 * 9 7 2 11 11 C 1.38912 * 119.99847 * 185.07234 * 10 9 7 12 12 C 1.38001 * 120.00119 * 179.72726 * 11 10 9 13 13 C 1.38926 * 119.99654 * 0.56820 * 12 11 10 14 14 N 1.39938 * 120.00146 * 179.67723 * 13 12 11 15 15 C 1.34777 * 120.00106 * 215.15585 * 14 13 12 16 16 O 1.21609 * 120.00292 * 355.49795 * 15 14 13 17 17 C 1.47412 * 119.99642 * 175.49822 * 15 14 13 18 18 C 1.41297 * 126.42010 * 0.02575 * 17 15 14 19 19 N 1.30450 * 108.02156 * 180.02562 * 18 17 15 20 20 N 1.39930 * 108.90474 * 359.97438 * 19 18 17 21 21 C 1.46497 * 125.75451 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.47240 * 304.97898 * 21 20 19 23 23 O 1.42896 * 109.47306 * 179.97438 * 22 21 20 24 24 C 1.34269 * 108.49009 * 359.73091 * 20 19 18 25 25 C 1.38931 * 119.99687 * 359.70851 * 13 12 11 26 26 C 1.38001 * 119.99390 * 359.97438 * 25 13 12 27 27 H 0.97002 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99824 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.99594 * 180.27037 * 12 11 10 30 30 H 0.96997 * 119.99939 * 35.16369 * 14 13 12 31 31 H 1.08000 * 125.98580 * 359.97438 * 18 17 15 32 32 H 1.09004 * 109.47074 * 64.97178 * 21 20 19 33 33 H 1.09000 * 109.47388 * 184.97694 * 21 20 19 34 34 H 1.09001 * 109.46999 * 299.99658 * 22 21 20 35 35 H 1.09000 * 109.47096 * 59.99618 * 22 21 20 36 36 H 0.96698 * 114.00118 * 180.02562 * 23 22 21 37 37 H 1.08004 * 126.29164 * 180.30772 * 24 20 19 38 38 H 1.08004 * 120.00461 * 179.97438 * 25 13 12 39 39 H 1.08002 * 119.99573 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8910 2.3965 -1.2124 6 1 1.8912 2.3963 1.2126 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1073 11 6 1.4349 -4.7348 -0.2198 12 6 2.1822 -5.8893 -0.3340 13 6 3.5698 -5.8223 -0.3245 14 7 4.3277 -6.9936 -0.4335 15 6 5.4933 -7.1066 0.2336 16 8 5.9271 -6.1616 0.8642 17 6 6.2424 -8.3757 0.1987 18 6 5.8670 -9.5528 -0.4869 19 7 6.7860 -10.4540 -0.2747 20 7 7.7790 -9.9048 0.5441 21 6 8.9826 -10.5968 1.0117 22 6 8.5826 -11.8894 1.7261 23 8 9.7566 -12.5648 2.1816 24 6 7.4453 -8.6348 0.8246 25 6 4.2050 -4.5924 -0.2062 26 6 3.4575 -3.4374 -0.0986 27 1 -0.4850 0.8401 0.0004 28 1 0.3561 -4.7873 -0.2220 29 1 1.6882 -6.8454 -0.4259 30 1 4.0141 -7.7242 -0.9892 31 1 4.9751 -9.6838 -1.0816 32 1 9.6190 -10.8349 0.1593 33 1 9.5266 -9.9531 1.7028 34 1 7.9462 -11.6514 2.5784 35 1 8.0386 -12.5332 1.0349 36 1 9.5783 -13.3948 2.6446 37 1 8.0125 -7.9438 1.4307 38 1 5.2837 -4.5402 -0.1984 39 1 3.9512 -2.4812 -0.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362015521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:46 Heat of formation + Delta-G solvation = 2.273403 kcal Electronic energy + Delta-G solvation = -24414.725088 eV Core-core repulsion = 20518.530512 eV Total energy + Delta-G solvation = -3896.194576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72844 -39.78822 -38.49896 -37.65296 -36.39558 -34.25273 -33.71853 -32.15053 -30.76959 -30.15325 -29.41972 -27.65702 -25.29921 -24.09763 -23.31859 -22.17371 -21.27712 -20.92260 -19.82564 -18.62740 -18.09704 -17.69145 -17.02047 -16.43369 -16.28404 -15.96040 -15.39449 -14.90459 -14.68563 -14.48808 -14.28623 -14.05007 -13.81980 -13.52876 -13.51682 -13.15082 -12.84311 -12.80308 -12.49756 -12.18341 -11.70889 -11.59009 -11.48108 -11.30922 -11.01375 -10.70282 -10.66509 -10.39376 -9.98610 -9.70942 -9.63280 -9.13280 -9.02225 -8.65811 -8.16023 -6.88784 -6.41558 -3.98806 1.22376 1.79674 1.85048 2.22119 2.36626 3.15294 3.17564 3.23211 3.37731 3.52461 3.53942 4.00615 4.09582 4.36117 4.44634 4.48595 4.61285 4.63197 4.86486 4.96669 5.07164 5.13264 5.20954 5.29826 5.43909 5.72001 5.80214 6.04684 6.18960 6.23906 6.39119 6.41106 6.77730 6.89258 6.90841 7.05736 7.14131 7.17139 7.35117 7.48300 7.77160 7.83718 8.04066 8.46325 9.04575 9.74544 10.76545 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.033489 B = 0.002069 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.882384 B =13530.719420 C =14132.268405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.178 4.178 12 C -0.093 4.093 13 C 0.037 3.963 14 N -0.655 5.655 15 C 0.587 3.413 16 O -0.535 6.535 17 C -0.285 4.285 18 C 0.084 3.916 19 N -0.298 5.298 20 N -0.363 5.363 21 C 0.132 3.868 22 C 0.066 3.934 23 O -0.571 6.571 24 C 0.132 3.868 25 C -0.064 4.064 26 C -0.221 4.221 27 H 0.269 0.731 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.400 0.600 31 H 0.192 0.808 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.390 0.610 37 H 0.191 0.809 38 H 0.126 0.874 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 -22.863 0.907 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.198 4.198 12 C -0.113 4.113 13 C -0.055 4.055 14 N -0.299 5.299 15 C 0.375 3.625 16 O -0.413 6.413 17 C -0.300 4.300 18 C -0.104 4.104 19 N -0.118 5.118 20 N -0.144 5.144 21 C 0.011 3.989 22 C -0.012 4.012 23 O -0.377 6.377 24 C -0.019 4.019 25 C -0.084 4.084 26 C -0.241 4.241 27 H 0.079 0.921 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.234 0.766 31 H 0.209 0.791 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.208 0.792 38 H 0.144 0.856 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.818 -22.774 0.942 27.744 hybrid contribution -0.255 0.751 0.160 0.809 sum 15.562 -22.023 1.102 26.989 Atomic orbital electron populations 1.70055 1.05928 1.27490 1.46375 1.25282 0.95846 0.98816 0.96639 0.85649 0.79227 0.80399 0.78191 1.19048 1.20188 1.20185 1.21387 0.91884 0.80822 1.52451 0.88959 1.83972 1.34291 1.11420 1.78439 1.19418 0.90287 0.88125 0.92958 1.19988 0.99460 0.89839 1.10533 1.20359 0.91445 0.97462 1.02046 1.17223 0.89846 0.85211 1.13260 1.42923 1.21618 1.17539 1.47807 1.17219 0.80569 0.86105 0.78648 1.90783 1.67971 1.39343 1.43197 1.20294 1.00059 0.96968 1.12657 1.24120 0.98215 0.90208 0.97850 1.77141 0.99405 1.22645 1.12586 1.48299 1.18700 1.09327 1.38028 1.21503 0.82781 0.94217 1.00402 1.22262 0.87468 0.93369 0.98148 1.86350 1.31910 1.40909 1.78567 1.23024 0.95354 0.86449 0.97036 1.20874 0.99869 0.90297 0.97331 1.21112 0.93560 0.98789 1.10601 0.92131 0.86083 0.86708 0.76551 0.79138 0.88417 0.87322 0.92821 0.91784 0.76144 0.79243 0.85625 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.39 -11.00 9.48 30.88 0.29 -10.71 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.10 9.75 0.01 0.00 -5.10 16 10 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 11 C -0.18 -3.72 9.98 -39.42 -0.39 -4.11 16 12 C -0.09 -1.62 9.96 -39.41 -0.39 -2.01 16 13 C 0.04 0.66 6.30 -83.65 -0.53 0.13 16 14 N -0.66 -9.04 5.32 -10.80 -0.06 -9.09 16 15 C 0.59 8.58 7.66 -12.53 -0.10 8.48 16 16 O -0.54 -9.86 14.33 5.27 0.08 -9.79 16 17 C -0.28 -3.19 6.13 -105.07 -0.64 -3.84 16 18 C 0.08 0.78 11.51 -16.98 -0.20 0.58 16 19 N -0.30 -2.95 12.33 30.86 0.38 -2.57 16 20 N -0.36 -3.12 3.65 -60.80 -0.22 -3.34 16 21 C 0.13 0.78 6.86 -4.04 -0.03 0.75 16 22 C 0.07 0.37 7.22 37.16 0.27 0.63 16 23 O -0.57 -3.04 13.66 -35.23 -0.48 -3.52 16 24 C 0.13 1.26 11.25 -16.55 -0.19 1.07 16 25 C -0.06 -1.30 8.69 -39.41 -0.34 -1.64 16 26 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.40 3.93 7.79 -40.82 -0.32 3.61 16 31 H 0.19 1.11 7.51 -52.49 -0.39 0.72 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.11 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.39 0.43 9.12 45.56 0.42 0.85 16 37 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 2.53 6.22 -52.48 -0.33 2.20 16 39 H 0.13 2.97 5.63 -52.49 -0.30 2.68 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -36.46 346.37 -5.59 -42.05 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.28 Total: 6.82 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.96 Total: -11.78 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.86 Total: -39.69 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.41 Total: -18.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.46 -5.59 -42.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362015521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.319 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds