Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86799 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47151 * 275.58818 * 3 2 1 5 5 H 1.48496 * 109.47090 * 35.59464 * 3 2 1 6 6 H 1.48510 * 109.46998 * 155.58946 * 3 2 1 7 7 C 1.38813 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00529 * 39.89910 * 7 2 1 9 9 N 1.36946 * 120.00014 * 219.90169 * 7 2 1 10 10 C 1.46959 * 120.59083 * 201.31481 * 9 7 2 11 11 C 1.53374 * 108.63561 * 235.24501 * 10 9 7 12 12 N 1.46970 * 108.63528 * 310.58299 * 11 10 9 13 13 C 1.34771 * 120.59328 * 235.20257 * 12 11 10 14 14 O 1.21677 * 119.99898 * 5.11921 * 13 12 11 15 15 C 1.46902 * 120.00198 * 185.12199 * 13 12 11 16 16 C 1.36383 * 126.76194 * 40.61056 * 15 13 12 17 17 N 1.35450 * 109.77250 * 179.97438 * 16 15 13 18 18 H 0.97003 * 124.79151 * 179.97438 * 17 16 15 19 19 C 1.38051 * 110.41791 * 359.97438 * 17 16 15 20 20 C 1.39112 * 133.16213 * 180.02562 * 19 17 16 21 21 C 1.37748 * 119.96726 * 179.97438 * 20 19 17 22 22 C 1.38950 * 120.60909 * 0.02825 * 21 20 19 23 23 F 1.35100 * 119.87396 * 179.97438 * 22 21 20 24 24 C 1.37948 * 120.24802 * 359.97438 * 22 21 20 25 25 C 1.39283 * 119.64971 * 359.95843 * 24 22 21 26 26 C 1.46966 * 118.81187 * 55.47065 * 12 11 10 27 27 C 1.46960 * 120.59147 * 21.33844 * 9 7 2 28 28 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.60816 * 115.50342 * 10 9 7 30 30 H 1.08994 * 109.75677 * 355.07394 * 10 9 7 31 31 H 1.08992 * 109.61662 * 190.83586 * 11 10 9 32 32 H 1.09000 * 109.60790 * 70.32172 * 11 10 9 33 33 H 1.07997 * 125.11608 * 0.23533 * 16 15 13 34 34 H 1.08003 * 120.01438 * 359.95501 * 20 19 17 35 35 H 1.08004 * 119.69509 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.17214 * 179.97438 * 24 22 21 37 37 H 1.09004 * 109.60802 * 64.27129 * 26 12 11 38 38 H 1.08998 * 109.60905 * 184.78063 * 26 12 11 39 39 H 1.09000 * 109.60604 * 244.49505 * 27 9 7 40 40 H 1.09003 * 109.61402 * 5.00235 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3796 2.1146 -1.3934 5 1 1.5117 2.6156 0.8149 6 1 3.6018 1.4089 0.5787 7 6 2.0101 -1.2022 0.0005 8 1 1.6588 -2.0289 -0.5990 9 7 3.1404 -1.3399 0.7614 10 6 4.1320 -2.3779 0.4466 11 6 4.3523 -3.2402 1.6957 12 7 4.5951 -2.3529 2.8419 13 6 5.7070 -2.4891 3.5912 14 8 6.5648 -3.2890 3.2673 15 6 5.8835 -1.6717 4.7990 16 6 4.9266 -1.3567 5.7184 17 7 5.4645 -0.5860 6.6938 18 1 4.9765 -0.2382 7.4566 19 6 6.8051 -0.3655 6.4492 20 6 7.7925 0.3418 7.1274 21 6 9.0754 0.3835 6.6276 22 6 9.3966 -0.2756 5.4473 23 9 10.6595 -0.2244 4.9702 24 6 8.4308 -0.9820 4.7608 25 6 7.1305 -1.0323 5.2574 26 6 3.6008 -1.3185 3.1600 27 6 3.3832 -0.4527 1.9075 28 1 -0.4850 0.8401 -0.0004 29 1 5.0720 -1.9094 0.1550 30 1 3.7659 -3.0019 -0.3687 31 1 5.2157 -3.8882 1.5454 32 1 3.4656 -3.8457 1.8832 33 1 3.8961 -1.6772 5.6772 34 1 7.5532 0.8582 8.0453 35 1 9.8384 0.9343 7.1576 36 1 8.6817 -1.4934 3.8433 37 1 2.6618 -1.7904 3.4494 38 1 3.9678 -0.6972 3.9769 39 1 4.2699 0.1528 1.7200 40 1 2.5198 0.1954 2.0579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091057719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = 27.292471 kcal Electronic energy + Delta-G solvation = -26360.138888 eV Core-core repulsion = 22477.402010 eV Total energy + Delta-G solvation = -3882.736878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.88231 -41.70514 -39.36274 -36.94278 -36.89866 -33.94225 -32.46364 -31.59031 -30.73932 -29.37899 -29.17793 -27.13817 -24.11738 -23.59722 -23.08304 -22.36595 -22.10850 -20.29715 -19.01489 -18.12454 -17.43644 -16.94981 -16.52056 -16.01882 -15.69805 -15.49051 -15.32080 -15.14267 -14.70334 -14.38665 -14.20542 -14.09970 -13.64476 -13.37677 -13.31383 -13.17870 -12.86074 -12.70616 -12.36520 -12.17365 -11.90722 -11.56379 -11.19714 -11.04697 -10.82842 -10.44080 -10.36167 -10.22664 -10.02065 -9.56603 -9.48427 -8.75062 -8.44481 -8.23491 -7.96207 -7.10756 -6.13556 -3.25692 0.68246 1.14640 1.95070 2.69885 3.10796 3.32370 3.38277 3.46728 3.53612 3.63358 4.09474 4.35028 4.49408 4.58295 4.64572 4.82143 4.83258 5.05684 5.13971 5.19318 5.36040 5.44569 5.56865 5.61441 5.72385 5.82057 5.88199 5.95200 6.00253 6.06130 6.11319 6.23556 6.31992 6.34055 6.48137 6.58036 6.75248 6.78164 6.94450 7.09778 7.78215 7.81899 8.18785 8.50062 8.84479 9.64555 10.03576 10.99975 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003773 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.627163 B = 7420.192872 C = 7708.410697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.040 3.960 3 Si 0.825 3.175 4 H -0.293 1.293 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.599 5.599 10 C 0.133 3.867 11 C 0.097 3.903 12 N -0.594 5.594 13 C 0.584 3.416 14 O -0.551 6.551 15 C -0.213 4.213 16 C 0.110 3.890 17 N -0.578 5.578 18 H 0.422 0.578 19 C 0.077 3.923 20 C -0.095 4.095 21 C -0.134 4.134 22 C 0.075 3.925 23 F -0.141 7.141 24 C -0.098 4.098 25 C -0.040 4.040 26 C 0.079 3.921 27 C 0.134 3.866 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.186 0.814 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.608 0.104 17.216 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.162 4.162 3 Si 0.652 3.348 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.402 4.402 8 H 0.103 0.897 9 N -0.323 5.323 10 C 0.007 3.993 11 C -0.026 4.026 12 N -0.326 5.326 13 C 0.373 3.627 14 O -0.430 6.430 15 C -0.224 4.224 16 C -0.022 4.022 17 N -0.180 5.180 18 H 0.260 0.740 19 C -0.028 4.028 20 C -0.115 4.115 21 C -0.154 4.154 22 C 0.055 3.945 23 F -0.120 7.120 24 C -0.117 4.117 25 C -0.045 4.045 26 C -0.046 4.046 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.203 0.797 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.831 -0.212 17.069 20.769 hybrid contribution 0.208 1.383 0.093 1.401 sum 12.039 1.171 17.162 20.996 Atomic orbital electron populations 1.70177 1.06216 1.26929 1.48059 1.25054 0.94677 0.97316 0.99130 0.87770 0.82393 0.86507 0.78151 1.22052 1.22075 1.18263 1.18798 0.98450 0.97662 1.25260 0.89697 1.44319 1.22149 1.36382 1.29426 1.21316 0.92410 0.91128 0.94474 1.22216 1.01328 0.92725 0.86344 1.47900 1.20867 1.34267 1.29598 1.17260 0.81468 0.81926 0.82052 1.90752 1.42084 1.38103 1.72094 1.20011 0.92771 1.09751 0.99837 1.22248 0.98558 0.93129 0.88248 1.41503 1.07855 1.44861 1.23743 0.74020 1.18218 0.84796 1.02465 0.97370 1.19806 0.90663 1.00730 1.00349 1.20741 0.96932 1.01834 0.95875 1.17325 0.79660 1.02185 0.95317 1.91488 1.37212 1.95192 1.88088 1.20493 0.90814 0.99410 1.01030 1.18424 0.92477 0.99204 0.94409 1.22808 0.91392 0.90451 0.99920 1.21720 0.99488 0.92051 0.86040 0.92762 0.95533 0.90709 0.89543 0.91365 0.79706 0.84973 0.84327 0.84142 0.90901 0.90313 0.94988 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.97 55.49 0.78 -24.50 16 2 C 0.04 1.08 4.80 -17.43 -0.08 1.00 16 3 Si 0.83 20.34 26.32 -169.99 -4.47 15.87 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.12 5.03 56.52 0.28 -5.83 16 7 C -0.27 -7.29 9.87 -15.05 -0.15 -7.44 16 8 H 0.09 2.39 8.02 -52.49 -0.42 1.97 16 9 N -0.60 -13.64 2.79 -171.77 -0.48 -14.12 16 10 C 0.13 2.60 6.67 -3.60 -0.02 2.57 16 11 C 0.10 1.68 6.60 -3.59 -0.02 1.66 16 12 N -0.59 -10.09 2.94 -173.67 -0.51 -10.60 16 13 C 0.58 10.07 7.59 -12.76 -0.10 9.97 16 14 O -0.55 -11.08 16.52 5.21 0.09 -10.99 16 15 C -0.21 -3.04 5.40 -103.31 -0.56 -3.59 16 16 C 0.11 1.11 9.42 -16.62 -0.16 0.96 16 17 N -0.58 -4.74 5.99 -10.47 -0.06 -4.80 16 18 H 0.42 1.83 8.96 -40.82 -0.37 1.46 16 19 C 0.08 0.82 7.26 -83.93 -0.61 0.21 16 20 C -0.10 -0.83 10.06 -39.44 -0.40 -1.23 16 21 C -0.13 -1.30 9.99 -39.50 -0.39 -1.69 16 22 C 0.08 0.94 7.29 -39.42 -0.29 0.65 16 23 F -0.14 -1.83 17.26 2.25 0.04 -1.80 16 24 C -0.10 -1.39 10.07 -39.30 -0.40 -1.78 16 25 C -0.04 -0.56 6.36 -104.95 -0.67 -1.23 16 26 C 0.08 1.27 5.70 -3.37 -0.02 1.25 16 27 C 0.13 2.75 4.57 -3.37 -0.02 2.73 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 31 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.19 1.39 7.23 -52.49 -0.38 1.01 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.05 4.66 -51.93 -0.24 0.81 16 39 H 0.03 0.69 6.90 -51.93 -0.36 0.33 16 40 H 0.08 1.65 5.21 -51.93 -0.27 1.38 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -33.54 329.45 -8.14 -41.68 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.60 Total: 0.25 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -3.88 Total: 4.05 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.28 Total: -54.02 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.47 Total: 15.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.54 -8.14 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091057719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.967 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds