Wall clock time and date at job start Tue Mar 31 2020 12:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46775 * 239.99751 * 3 2 1 5 5 H 1.48500 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46878 * 119.99535 * 3 2 1 7 7 C 1.38815 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99411 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65091 * 0.04160 * 9 7 2 11 11 C 1.54373 * 107.28716 * 181.05610 * 10 9 7 12 12 C 1.55157 * 102.92096 * 22.13866 * 11 10 9 13 13 H 1.09004 * 111.00556 * 82.64039 * 12 11 10 14 14 O 1.42906 * 111.00535 * 206.45203 * 12 11 10 15 15 C 1.42899 * 114.00214 * 206.81996 * 14 12 11 16 16 C 1.50694 * 109.47130 * 180.02562 * 15 14 12 17 17 N 1.30976 * 126.44376 * 90.00043 * 16 15 14 18 18 C 1.35209 * 105.57726 * 180.02562 * 17 16 15 19 19 C 1.48463 * 126.40657 * 180.02562 * 18 17 16 20 20 C 1.39412 * 120.09910 * 179.72598 * 19 18 17 21 21 N 1.32009 * 119.87666 * 179.75351 * 20 19 18 22 22 C 1.32192 * 120.08361 * 0.49363 * 21 20 19 23 23 C 1.38475 * 120.19883 * 359.75531 * 22 21 20 24 24 N 1.31986 * 120.12622 * 0.02562 * 23 22 21 25 25 N 1.30725 * 107.18144 * 359.97438 * 18 17 16 26 26 O 1.21297 * 110.10627 * 0.02562 * 25 18 17 27 27 C 1.47425 * 125.64417 * 180.02562 * 9 7 2 28 28 H 0.97004 * 120.00340 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88224 * 300.43860 * 10 9 7 30 30 H 1.08996 * 109.88143 * 61.45265 * 10 9 7 31 31 H 1.08997 * 110.70560 * 263.79722 * 11 10 9 32 32 H 1.08996 * 110.75460 * 140.50463 * 11 10 9 33 33 H 1.08996 * 109.46750 * 59.99626 * 15 14 12 34 34 H 1.08998 * 109.46750 * 300.00007 * 15 14 12 35 35 H 1.07998 * 120.05914 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.90011 * 179.73397 * 22 21 20 37 37 H 1.08003 * 119.93560 * 179.97438 * 23 22 21 38 38 H 1.09000 * 110.37081 * 37.06201 * 27 9 7 39 39 H 1.09007 * 110.36444 * 274.74438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0009 11 6 -0.4490 -4.0445 0.0269 12 6 0.8514 -4.6559 0.6121 13 1 0.8557 -4.5963 1.7005 14 8 1.0247 -6.0055 0.1751 15 6 1.7860 -6.8143 1.0741 16 6 1.9057 -8.2091 0.5162 17 7 2.8524 -8.6529 -0.2726 18 6 2.5480 -9.9484 -0.5119 19 6 3.3215 -10.8940 -1.3555 20 6 2.8880 -12.2102 -1.5079 21 7 3.5765 -13.0460 -2.2630 22 6 4.6802 -12.6387 -2.8659 23 6 5.1166 -11.3335 -2.7126 24 7 4.4322 -10.4899 -1.9630 25 7 1.4459 -10.2127 0.1395 26 8 1.0655 -9.2258 0.7334 27 6 1.9335 -3.7311 0.0016 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5585 -2.0519 0.8822 30 1 -0.5537 -2.0823 -0.9019 31 1 -0.6318 -4.4188 -0.9803 32 1 -1.2991 -4.2518 0.6768 33 1 1.2859 -6.8513 2.0418 34 1 2.7806 -6.3852 1.1953 35 1 1.9887 -12.5445 -1.0120 36 1 5.2435 -13.3262 -3.4795 37 1 6.0192 -11.0055 -3.2067 38 1 2.8323 -3.7402 0.6181 39 1 2.1677 -4.0423 -1.0165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224255921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:12 Heat of formation + Delta-G solvation = 118.475362 kcal Electronic energy + Delta-G solvation = -24827.969288 eV Core-core repulsion = 20969.106359 eV Total energy + Delta-G solvation = -3858.862930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.91282 -41.51810 -38.64586 -36.47334 -36.11664 -34.73339 -33.68982 -32.24634 -31.56696 -29.35720 -28.05627 -26.86667 -26.27464 -25.11120 -24.33693 -23.66417 -22.06563 -20.48913 -20.14073 -18.57996 -18.48046 -17.88490 -17.35818 -17.04548 -16.68772 -16.59526 -15.52962 -15.35009 -15.16544 -14.65855 -14.63533 -14.01387 -13.55961 -13.47708 -12.89975 -12.61433 -12.50651 -12.32827 -12.12867 -12.03304 -11.76129 -11.66665 -11.38142 -11.17305 -10.96815 -10.81924 -10.72276 -10.28938 -10.14644 -9.88115 -9.75852 -9.68700 -9.61817 -9.33938 -8.62184 -6.87517 -5.73695 -3.08043 -0.17782 0.51420 0.84753 1.93468 2.35813 2.68924 3.22554 3.24975 3.40161 3.44350 3.45597 3.64643 3.82762 3.96359 4.13893 4.47409 4.50253 4.61887 4.70478 4.88864 4.95658 5.07028 5.25431 5.33072 5.34765 5.51066 5.55510 5.65757 5.74016 5.75221 6.14886 6.38552 6.46657 6.58981 6.62997 6.66907 7.15396 7.30854 7.52289 7.56889 7.73439 7.79063 8.22350 9.18734 9.78709 10.43407 11.37970 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.002225 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.147415 B =12579.607639 C =13363.718442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.137 4.137 12 C 0.073 3.927 13 H 0.076 0.924 14 O -0.371 6.371 15 C 0.154 3.846 16 C 0.199 3.801 17 N -0.431 5.431 18 C 0.210 3.790 19 C 0.152 3.848 20 C 0.090 3.910 21 N -0.433 5.433 22 C 0.062 3.938 23 C 0.060 3.940 24 N -0.399 5.399 25 N -0.360 5.360 26 O 0.101 5.899 27 C 0.117 3.883 28 H 0.254 0.746 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.181 0.819 38 H 0.041 0.959 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 -24.231 -0.107 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.176 4.176 12 C 0.015 3.985 13 H 0.094 0.906 14 O -0.289 6.289 15 C 0.075 3.925 16 C -0.022 4.022 17 N -0.164 5.164 18 C -0.061 4.061 19 C 0.012 3.988 20 C -0.072 4.072 21 N -0.147 5.147 22 C -0.099 4.099 23 C -0.102 4.102 24 N -0.115 5.115 25 N -0.064 5.064 26 O 0.035 5.965 27 C -0.009 4.009 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.195 0.805 36 H 0.196 0.804 37 H 0.198 0.802 38 H 0.059 0.941 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.630 -24.801 -0.531 25.438 hybrid contribution 0.535 1.129 0.151 1.259 sum 6.165 -23.672 -0.380 24.465 Atomic orbital electron populations 1.69932 1.04899 1.25278 1.56912 1.24818 0.95755 0.97726 1.02114 0.86171 0.78439 0.83034 0.77940 1.21123 1.21577 1.21115 1.19016 0.90461 0.82208 1.44087 0.90362 1.44340 1.01709 0.99673 1.87443 1.21201 0.84420 0.87463 1.01604 1.23031 0.94942 0.98801 1.00802 1.23602 0.98230 0.78405 0.98220 0.90579 1.87955 1.72509 1.22699 1.45762 1.20679 0.99712 0.79730 0.92360 1.28563 0.84911 0.94647 0.94082 1.72174 1.24481 1.06687 1.13062 1.23132 0.92542 0.90411 1.00024 1.18836 0.92985 0.90753 0.96218 1.23728 0.99632 0.89098 0.94725 1.68591 1.05572 1.35356 1.05209 1.24072 0.93135 0.96150 0.96531 1.23943 1.00031 0.90832 0.95402 1.68323 1.03530 1.35957 1.03670 1.74859 1.13298 1.07988 1.10216 1.85317 1.44176 1.14963 1.52053 1.21929 0.94351 0.86538 0.98118 0.93608 0.93182 0.93416 0.91353 0.91479 0.89004 0.87969 0.80479 0.80405 0.80168 0.94091 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.31 55.49 0.57 -26.21 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.28 3.39 -170.05 -0.58 -15.86 16 10 C 0.18 4.23 5.38 -3.04 -0.02 4.21 16 11 C -0.14 -2.52 6.69 -24.87 -0.17 -2.69 16 12 C 0.07 1.23 3.51 -24.59 -0.09 1.14 16 13 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 14 O -0.37 -5.65 10.14 -35.23 -0.36 -6.01 16 15 C 0.15 1.73 6.42 36.00 0.23 1.96 16 16 C 0.20 2.51 8.13 -12.99 -0.11 2.41 16 17 N -0.43 -6.26 11.57 -9.89 -0.11 -6.38 16 18 C 0.21 2.82 7.92 -156.14 -1.24 1.58 16 19 C 0.15 1.81 6.76 -82.76 -0.56 1.25 16 20 C 0.09 0.88 10.88 -17.04 -0.19 0.69 16 21 N -0.43 -3.92 10.49 -12.78 -0.13 -4.06 16 22 C 0.06 0.40 11.22 -17.31 -0.19 0.20 16 23 C 0.06 0.44 11.22 -17.40 -0.20 0.25 16 24 N -0.40 -4.65 10.44 -9.57 -0.10 -4.75 16 25 N -0.36 -4.56 11.86 30.96 0.37 -4.19 16 26 O 0.10 1.23 11.29 18.02 0.20 1.43 16 27 C 0.12 2.40 6.97 -2.54 -0.02 2.39 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 30 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.74 8.11 -51.93 -0.42 0.31 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.18 1.46 7.87 -52.49 -0.41 1.05 16 36 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -33.99 342.91 -7.30 -41.29 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.52 Total: -3.90 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.78 Total: 6.58 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.01 Total: -61.44 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.15 Total: -4.57 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.99 -7.30 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224255921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.769 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds