Wall clock time and date at job start Tue Mar 31 2020 12:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99990 * 2 1 4 4 H 1.48502 * 109.46775 * 239.99751 * 3 2 1 5 5 H 1.48500 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46878 * 119.99535 * 3 2 1 7 7 C 1.38815 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99411 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65091 * 0.04160 * 9 7 2 11 11 C 1.54373 * 107.28716 * 181.05610 * 10 9 7 12 12 C 1.55157 * 102.92096 * 22.13866 * 11 10 9 13 13 H 1.09004 * 111.00556 * 82.64039 * 12 11 10 14 14 O 1.42906 * 111.00535 * 206.45203 * 12 11 10 15 15 C 1.42899 * 114.00214 * 206.81996 * 14 12 11 16 16 C 1.50694 * 109.47130 * 180.02562 * 15 14 12 17 17 N 1.30976 * 126.44376 * 90.00043 * 16 15 14 18 18 C 1.35209 * 105.57726 * 180.02562 * 17 16 15 19 19 C 1.48463 * 126.40657 * 180.02562 * 18 17 16 20 20 C 1.39412 * 120.09910 * 179.72598 * 19 18 17 21 21 N 1.32009 * 119.87666 * 179.75351 * 20 19 18 22 22 C 1.32192 * 120.08361 * 0.49363 * 21 20 19 23 23 C 1.38475 * 120.19883 * 359.75531 * 22 21 20 24 24 N 1.31986 * 120.12622 * 0.02562 * 23 22 21 25 25 N 1.30725 * 107.18144 * 359.97438 * 18 17 16 26 26 O 1.21297 * 110.10627 * 0.02562 * 25 18 17 27 27 C 1.47425 * 125.64417 * 180.02562 * 9 7 2 28 28 H 0.97004 * 120.00340 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88224 * 300.43860 * 10 9 7 30 30 H 1.08996 * 109.88143 * 61.45265 * 10 9 7 31 31 H 1.08997 * 110.70560 * 263.79722 * 11 10 9 32 32 H 1.08996 * 110.75460 * 140.50463 * 11 10 9 33 33 H 1.08996 * 109.46750 * 59.99626 * 15 14 12 34 34 H 1.08998 * 109.46750 * 300.00007 * 15 14 12 35 35 H 1.07998 * 120.05914 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.90011 * 179.73397 * 22 21 20 37 37 H 1.08003 * 119.93560 * 179.97438 * 23 22 21 38 38 H 1.09000 * 110.37081 * 37.06201 * 27 9 7 39 39 H 1.09007 * 110.36444 * 274.74438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 -0.0009 11 6 -0.4490 -4.0445 0.0269 12 6 0.8514 -4.6559 0.6121 13 1 0.8557 -4.5963 1.7005 14 8 1.0247 -6.0055 0.1751 15 6 1.7860 -6.8143 1.0741 16 6 1.9057 -8.2091 0.5162 17 7 2.8524 -8.6529 -0.2726 18 6 2.5480 -9.9484 -0.5119 19 6 3.3215 -10.8940 -1.3555 20 6 2.8880 -12.2102 -1.5079 21 7 3.5765 -13.0460 -2.2630 22 6 4.6802 -12.6387 -2.8659 23 6 5.1166 -11.3335 -2.7126 24 7 4.4322 -10.4899 -1.9630 25 7 1.4459 -10.2127 0.1395 26 8 1.0655 -9.2258 0.7334 27 6 1.9335 -3.7311 0.0016 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5585 -2.0519 0.8822 30 1 -0.5537 -2.0823 -0.9019 31 1 -0.6318 -4.4188 -0.9803 32 1 -1.2991 -4.2518 0.6768 33 1 1.2859 -6.8513 2.0418 34 1 2.7806 -6.3852 1.1953 35 1 1.9887 -12.5445 -1.0120 36 1 5.2435 -13.3262 -3.4795 37 1 6.0192 -11.0055 -3.2067 38 1 2.8323 -3.7402 0.6181 39 1 2.1677 -4.0423 -1.0165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224255921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:12 Heat of formation + Delta-G solvation = 92.286050 kcal Electronic energy + Delta-G solvation = -24829.104942 eV Core-core repulsion = 20969.106359 eV Total energy + Delta-G solvation = -3859.998583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.86504 -42.17190 -40.00224 -37.81648 -37.24509 -35.45345 -34.72592 -34.02849 -32.36172 -31.12740 -29.33685 -28.31684 -27.05571 -26.26955 -25.74867 -24.55639 -22.93291 -22.06846 -21.86832 -19.53023 -19.40438 -18.95298 -18.57335 -18.01201 -17.80972 -17.47132 -16.73473 -16.54335 -16.33875 -16.04882 -15.64139 -15.24925 -15.16397 -14.24566 -14.22909 -13.90256 -13.82545 -13.67895 -13.40966 -13.16167 -12.91511 -12.81870 -12.70198 -12.51054 -12.38526 -12.33061 -12.07232 -12.04468 -11.75924 -11.69088 -11.39767 -10.69851 -10.62541 -10.34011 -10.32917 -8.90863 -7.84200 -5.20684 -0.89968 -0.17177 -0.03578 1.03008 1.42789 1.48175 1.51440 1.57628 1.89429 2.35829 2.50577 2.56808 2.81165 3.09780 3.22875 3.34725 3.43678 3.63916 3.77783 3.82590 3.99777 4.00783 4.11942 4.21445 4.25076 4.29999 4.40069 4.40908 4.63770 4.66828 4.77562 4.98277 5.03921 5.08200 5.17349 5.46198 5.65334 5.75576 6.03998 6.06569 6.22400 6.51418 6.80275 7.10437 7.76752 8.40251 9.25897 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.002225 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.147415 B =12579.607639 C =13363.718442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.626 5.626 10 C 0.184 3.816 11 C -0.126 4.126 12 C 0.097 3.903 13 H 0.105 0.895 14 O -0.384 6.384 15 C 0.149 3.851 16 C 0.202 3.798 17 N -0.462 5.462 18 C 0.203 3.797 19 C 0.120 3.880 20 C 0.090 3.910 21 N -0.451 5.451 22 C 0.081 3.919 23 C 0.063 3.937 24 N -0.436 5.436 25 N -0.365 5.365 26 O 0.104 5.896 27 C 0.111 3.889 28 H 0.248 0.752 29 H 0.024 0.976 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.184 0.816 36 H 0.224 0.776 37 H 0.217 0.783 38 H 0.055 0.945 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 -26.001 0.152 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.164 4.164 12 C 0.039 3.961 13 H 0.123 0.877 14 O -0.302 6.302 15 C 0.072 3.928 16 C -0.019 4.019 17 N -0.196 5.196 18 C -0.068 4.068 19 C -0.018 4.018 20 C -0.070 4.070 21 N -0.165 5.165 22 C -0.080 4.080 23 C -0.100 4.100 24 N -0.153 5.153 25 N -0.069 5.069 26 O 0.039 5.961 27 C -0.015 4.015 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.201 0.799 36 H 0.241 0.759 37 H 0.234 0.766 38 H 0.073 0.927 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 7.079 -26.607 -0.245 27.534 hybrid contribution 0.218 1.536 -0.050 1.552 sum 7.298 -25.071 -0.295 26.114 Atomic orbital electron populations 1.70154 1.06260 1.25479 1.58080 1.25673 0.96667 1.01059 1.02481 0.85135 0.77131 0.78683 0.78264 1.20615 1.22054 1.19902 1.19422 0.91060 0.83532 1.43294 0.89875 1.44648 1.02574 1.00909 1.87235 1.20952 0.83744 0.90977 0.98380 1.22852 0.97058 0.94756 1.01777 1.23222 0.95122 0.78572 0.99177 0.87701 1.87909 1.73162 1.21859 1.47291 1.21063 1.00452 0.78246 0.93070 1.28779 0.84499 0.95061 0.93537 1.72156 1.25727 1.07579 1.14148 1.23509 0.92721 0.90432 1.00118 1.18881 0.93939 0.91274 0.97731 1.23768 0.99931 0.88493 0.94841 1.68676 1.06697 1.35345 1.05766 1.24837 0.91850 0.96460 0.94886 1.24634 1.00416 0.90839 0.94121 1.68262 1.04145 1.37842 1.05007 1.74829 1.13342 1.08190 1.10532 1.85295 1.43973 1.14891 1.51947 1.22107 0.96133 0.85285 0.97989 0.94281 0.95784 0.97498 0.91567 0.88463 0.84810 0.86878 0.79939 0.75923 0.76627 0.92676 0.96605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.81 10.31 21.65 0.22 -56.59 16 2 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 3 Si 0.98 45.44 29.55 68.60 2.03 47.46 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.24 -13.63 10.28 84.03 0.86 -12.77 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -31.98 3.39 -691.92 -2.35 -34.33 16 10 C 0.18 8.97 5.38 86.75 0.47 9.43 16 11 C -0.13 -4.49 6.69 31.80 0.21 -4.28 16 12 C 0.10 3.04 3.51 31.98 0.11 3.15 16 13 H 0.11 2.74 7.86 -2.39 -0.02 2.72 16 14 O -0.38 -10.79 10.14 -148.98 -1.51 -12.30 16 15 C 0.15 2.96 6.42 71.23 0.46 3.42 16 16 C 0.20 4.87 8.13 88.36 0.72 5.58 16 17 N -0.46 -13.35 11.57 -302.55 -3.50 -16.85 16 18 C 0.20 5.49 7.92 137.32 1.09 6.58 16 19 C 0.12 2.85 6.76 41.99 0.28 3.14 16 20 C 0.09 1.72 10.88 84.95 0.92 2.64 16 21 N -0.45 -7.41 10.49 -194.36 -2.04 -9.45 16 22 C 0.08 0.81 11.22 84.70 0.95 1.76 16 23 C 0.06 0.78 11.22 84.73 0.95 1.73 16 24 N -0.44 -9.88 10.44 -184.21 -1.92 -11.81 16 25 N -0.36 -9.19 11.86 -59.18 -0.70 -9.89 16 26 O 0.10 2.45 11.29 74.55 0.84 3.29 16 27 C 0.11 4.44 6.97 86.85 0.61 5.04 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.02 1.27 7.38 -2.39 -0.02 1.26 16 30 H 0.01 0.38 7.50 -2.39 -0.02 0.36 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.13 1.58 8.11 -2.39 -0.02 1.56 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.18 3.04 7.87 -2.91 -0.02 3.02 16 36 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 37 H 0.22 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -77.11 342.91 0.25 -76.86 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.09 Total: 1.42 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 8.10 Total: 22.17 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -10.29 Total: -138.91 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.67 Total: -9.01 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.11 0.25 -76.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224255921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.146 kcal (2) G-P(sol) polarization free energy of solvation -77.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds