Wall clock time and date at job start Tue Mar 31 2020 11:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00281 * 2 1 4 4 C 1.53004 * 109.47024 * 270.00200 * 3 2 1 5 5 C 1.47198 * 109.46899 * 179.97438 * 4 3 2 6 6 N 4.80469 * 118.48703 * 340.02656 * 2 1 3 7 7 C 1.34771 * 120.00145 * 180.02562 * 2 1 3 8 8 O 1.21361 * 120.00586 * 181.00960 * 7 2 1 9 9 C 1.49330 * 119.99926 * 1.00626 * 7 2 1 10 10 O 1.21391 * 119.99758 * 4.07127 * 9 7 2 11 11 N 1.34771 * 120.00127 * 184.07296 * 9 7 2 12 12 C 1.39742 * 119.99979 * 173.27037 * 11 9 7 13 13 C 1.38993 * 120.00464 * 330.87060 * 12 11 9 14 14 C 1.37972 * 119.99388 * 180.02562 * 13 12 11 15 15 C 1.38942 * 120.00373 * 0.02562 * 14 13 12 16 16 O 1.35752 * 119.99144 * 179.97438 * 15 14 13 17 17 C 1.34804 * 117.00214 * 5.72155 * 16 15 14 18 18 H 1.07996 * 119.99985 * 354.92548 * 17 16 15 19 19 C 1.38652 * 119.99914 * 174.91340 * 17 16 15 20 20 N 1.31560 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99708 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46956 * 60.00639 * 21 19 17 23 23 H 1.48500 * 109.47103 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47153 * 300.00361 * 21 19 17 25 25 C 1.38937 * 120.01263 * 0.24832 * 15 14 13 26 26 C 1.37969 * 120.01050 * 359.49039 * 25 15 14 27 27 H 1.09000 * 109.47306 * 263.26004 * 1 2 3 28 28 H 1.09004 * 109.46875 * 23.26037 * 1 2 3 29 29 H 1.09003 * 109.47403 * 143.25739 * 1 2 3 30 30 H 1.09003 * 109.47107 * 29.99755 * 3 2 1 31 31 H 1.08995 * 109.47047 * 150.00087 * 3 2 1 32 32 H 1.09003 * 109.46815 * 299.99734 * 4 3 2 33 33 H 1.09001 * 109.47011 * 59.99762 * 4 3 2 34 34 H 0.96995 * 119.99921 * 353.26468 * 11 9 7 35 35 H 1.08003 * 120.00584 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.99947 * 179.97438 * 14 13 12 37 37 H 0.97007 * 119.99724 * 179.97438 * 20 19 17 38 38 H 1.08005 * 119.99337 * 179.72838 * 25 15 14 39 39 H 1.07992 * 120.00507 * 180.22799 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.1880 2.9854 -1.4425 6 7 3.7566 3.9690 -1.4425 7 6 2.1388 -1.1671 -0.0005 8 8 3.3523 -1.1673 0.0180 9 6 1.3924 -2.4603 -0.0238 10 8 0.1820 -2.4608 -0.1169 11 7 2.0624 -3.6267 0.0585 12 6 1.3602 -4.8289 0.1785 13 6 0.1170 -4.8486 0.7998 14 6 -0.5759 -6.0358 0.9186 15 6 -0.0308 -7.2116 0.4178 16 8 -0.7125 -8.3796 0.5353 17 6 -1.9607 -8.3117 1.0399 18 1 -2.3448 -7.3709 1.4056 19 6 -2.7514 -9.4495 1.0893 20 7 -2.2834 -10.5956 0.6441 21 14 -4.4813 -9.3552 1.7880 22 1 -5.2852 -8.3940 0.9911 23 1 -5.1129 -10.6978 1.7289 24 1 -4.4207 -8.8988 3.1998 25 6 1.2144 -7.1931 -0.1982 26 6 1.9054 -6.0054 -0.3222 27 1 -0.3634 -0.1206 1.0205 28 1 -0.3633 0.9442 -0.4059 29 1 -0.3634 -0.8235 -0.6148 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 3.0416 0.9507 -1.9564 33 1 1.5001 1.8407 -1.9563 34 1 3.0320 -3.6318 0.0344 35 1 -0.3066 -3.9348 1.1895 36 1 -1.5417 -6.0513 1.4017 37 1 -2.8365 -11.3918 0.6790 38 1 1.6398 -8.1080 -0.5835 39 1 2.8716 -5.9905 -0.8043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340068310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:53 Heat of formation + Delta-G solvation = -17.277412 kcal Electronic energy + Delta-G solvation = -24831.554108 eV Core-core repulsion = 20934.511745 eV Total energy + Delta-G solvation = -3897.042363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18923 -39.52503 -38.54527 -37.40353 -36.82149 -36.10411 -34.07522 -32.25587 -32.17421 -30.32074 -28.47630 -27.23513 -26.18642 -25.28936 -23.35314 -22.32416 -21.05335 -19.93560 -18.46245 -18.23376 -17.88787 -17.33844 -17.09328 -16.32120 -16.18460 -15.73306 -15.26098 -14.78058 -14.57993 -14.53249 -14.20494 -13.76966 -13.75716 -13.52012 -13.28873 -13.10101 -13.07223 -12.98106 -12.67034 -12.63216 -12.34656 -11.88185 -11.68609 -11.64880 -11.53351 -11.35366 -11.08101 -10.82260 -10.50747 -9.83683 -9.59660 -9.34653 -9.13640 -8.77442 -8.31120 -7.02525 -6.50797 -4.08161 1.10340 1.94962 2.08600 2.18311 2.33907 2.38352 3.06206 3.11035 3.14261 3.15033 3.23275 3.63107 3.92586 4.16909 4.38841 4.40380 4.49232 4.79166 4.86368 5.03036 5.10162 5.18660 5.24552 5.38568 5.56813 5.59838 5.67573 5.85120 6.03643 6.08161 6.17215 6.55459 6.61874 6.72243 6.87003 6.94527 7.09018 7.19595 7.26470 7.34341 7.57533 7.64340 7.93490 8.00586 8.94477 9.62550 10.66573 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.002275 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.142493 B =12302.104918 C =13071.909183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.589 5.589 3 C 0.117 3.883 4 C -0.044 4.044 5 C 0.211 3.789 6 N -0.431 5.431 7 C 0.511 3.489 8 O -0.519 6.519 9 C 0.496 3.504 10 O -0.502 6.502 11 N -0.621 5.621 12 C 0.025 3.975 13 C -0.063 4.063 14 C -0.220 4.220 15 C 0.148 3.852 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.176 4.176 26 C -0.087 4.087 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.414 0.586 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.271 0.729 38 H 0.124 0.876 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 19.182 -1.719 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.322 5.322 3 C -0.007 4.007 4 C -0.085 4.085 5 C -0.108 4.108 6 N -0.108 5.108 7 C 0.294 3.706 8 O -0.394 6.394 9 C 0.278 3.722 10 O -0.378 6.378 11 N -0.266 5.266 12 C -0.068 4.068 13 C -0.083 4.083 14 C -0.239 4.239 15 C 0.094 3.906 16 O -0.075 6.075 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.196 4.196 26 C -0.107 4.107 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.250 0.750 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.081 20.179 -1.823 21.153 hybrid contribution -0.670 -0.222 0.311 0.771 sum 5.411 19.957 -1.512 20.732 Atomic orbital electron populations 1.22607 0.76773 1.04874 1.04268 1.47634 1.08594 1.04514 1.71461 1.21442 0.99428 0.85053 0.94781 1.19671 1.00442 0.88194 1.00236 1.28877 0.93730 0.94432 0.93739 1.81273 1.09654 1.12076 1.07833 1.20249 0.87435 0.85283 0.77618 1.90773 1.13287 1.87294 1.48063 1.19893 0.87806 0.85013 0.79515 1.90669 1.13404 1.86246 1.47482 1.42897 1.10740 1.04181 1.68740 1.17234 0.96274 0.84086 1.09178 1.20762 0.93176 0.97950 0.96433 1.21077 1.02700 0.91959 1.08204 1.19443 0.91870 0.86513 0.92798 1.83965 1.27178 1.25152 1.71250 1.21306 0.87628 0.97333 1.40532 0.88948 1.25309 0.99856 0.94335 0.96980 1.70029 1.37294 0.99514 1.42563 0.85769 0.80233 0.78011 0.79384 1.19398 1.20263 1.19444 1.20007 0.95036 0.97858 1.06705 1.20353 0.99582 0.91020 0.99722 0.91877 0.91237 0.86503 0.88775 0.88463 0.86739 0.86802 0.74957 0.85699 0.85032 0.91865 0.85840 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 9.58 59.84 0.57 0.94 16 2 N -0.59 -4.34 2.87 -182.13 -0.52 -4.86 16 3 C 0.12 0.59 5.34 -4.04 -0.02 0.57 16 4 C -0.04 -0.18 6.03 -29.52 -0.18 -0.36 16 5 C 0.21 1.49 15.43 -20.76 -0.32 1.17 16 6 N -0.43 -4.51 18.54 42.15 0.78 -3.73 16 7 C 0.51 5.29 7.74 -11.64 -0.09 5.20 16 8 O -0.52 -6.13 16.06 5.49 0.09 -6.04 16 9 C 0.50 6.22 7.54 -11.64 -0.09 6.13 16 10 O -0.50 -7.08 10.56 5.46 0.06 -7.02 16 11 N -0.62 -8.11 5.34 -10.27 -0.05 -8.17 16 12 C 0.02 0.40 6.35 -83.69 -0.53 -0.13 16 13 C -0.06 -1.16 8.66 -39.40 -0.34 -1.50 16 14 C -0.22 -4.60 9.16 -39.42 -0.36 -4.96 16 15 C 0.15 3.41 6.65 -39.06 -0.26 3.15 16 16 O -0.17 -4.73 9.75 0.12 0.00 -4.73 16 17 C -0.39 -10.58 9.48 30.89 0.29 -10.28 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.48 13.67 55.48 0.76 -23.73 16 21 Si 0.94 19.91 29.55 -169.99 -5.02 14.88 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.18 -3.46 9.98 -39.42 -0.39 -3.85 16 26 C -0.09 -1.41 9.95 -39.40 -0.39 -1.81 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.25 8.02 -51.93 -0.42 -0.17 16 29 H 0.12 1.02 5.30 -51.99 -0.28 0.74 16 30 H 0.09 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.10 0.61 7.41 -51.93 -0.38 0.22 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.41 4.50 8.28 -40.82 -0.34 4.16 16 35 H 0.13 2.15 6.14 -52.48 -0.32 1.83 16 36 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.84 347.95 -4.85 -37.69 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.97 Total: 5.21 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.21 Total: -4.75 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.96 Total: -40.48 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.15 Total: -17.80 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.84 -4.85 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340068310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.415 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds