Wall clock time and date at job start Tue Mar 31 2020 12:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00382 * 2 1 4 4 H 1.48501 * 109.47261 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.47093 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47377 * 150.00007 * 3 2 1 7 7 C 1.37885 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99752 * 359.97438 * 7 2 1 10 10 O 1.42891 * 110.88652 * 303.87950 * 9 7 2 11 11 C 1.55160 * 110.99956 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.94046 * 206.38648 * 11 9 7 13 13 N 1.47027 * 107.27137 * 22.19148 * 12 11 9 14 14 C 1.34771 * 125.64930 * 181.02197 * 13 12 11 15 15 O 1.21571 * 120.00054 * 179.75400 * 14 13 12 16 16 N 1.34782 * 120.00023 * 0.02806 * 14 13 12 17 17 C 1.38359 * 119.99989 * 175.91170 * 16 14 13 18 18 C 1.36701 * 120.51886 * 20.19001 * 17 16 14 19 19 C 1.39610 * 119.37446 * 179.81633 * 18 17 16 20 20 N 1.31449 * 120.37659 * 0.45179 * 19 18 17 21 21 C 1.34045 * 120.98619 * 359.78076 * 20 19 18 22 22 C 1.38819 * 132.55699 * 180.02562 * 21 20 19 23 23 C 1.38771 * 107.64163 * 180.02562 * 22 21 20 24 24 N 1.31335 * 108.96423 * 0.02562 * 23 22 21 25 25 N 1.36934 * 120.51232 * 200.47237 * 17 16 14 26 26 C 1.47426 * 108.70100 * 1.28881 * 13 12 11 27 27 H 0.97002 * 119.99321 * 359.97438 * 1 2 3 28 28 H 0.96703 * 114.00278 * 56.12185 * 10 9 7 29 29 H 1.09001 * 110.72031 * 88.02759 * 11 9 7 30 30 H 1.08998 * 110.87528 * 324.82133 * 11 9 7 31 31 H 1.09004 * 109.88179 * 262.78004 * 12 11 9 32 32 H 1.08998 * 109.88234 * 141.61202 * 12 11 9 33 33 H 0.97004 * 119.99807 * 355.90864 * 16 14 13 34 34 H 1.08008 * 120.31101 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.81295 * 180.23092 * 19 18 17 36 36 H 1.07999 * 126.17835 * 0.02562 * 22 21 20 37 37 H 1.08003 * 125.51973 * 180.02562 * 23 22 21 38 38 H 1.08999 * 110.36578 * 94.47805 * 26 13 12 39 39 H 1.09000 * 110.36385 * 216.80064 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.3521 -2.5685 1.1081 11 6 2.2273 -3.7051 -0.0005 12 6 1.3976 -4.8215 -0.6690 13 7 0.3461 -4.1685 -1.4625 14 6 -0.6005 -4.8007 -2.1838 15 8 -1.4264 -4.1562 -2.8007 16 7 -0.6351 -6.1477 -2.2170 17 6 -1.6561 -6.7973 -2.8877 18 6 -2.3847 -6.1446 -3.8426 19 6 -3.4072 -6.8242 -4.5073 20 7 -3.6737 -8.0772 -4.2124 21 6 -2.9718 -8.7299 -3.2754 22 6 -3.0433 -10.0252 -2.7810 23 6 -2.0627 -10.1587 -1.8082 24 7 -1.4153 -9.0216 -1.6958 25 7 -1.9563 -8.1022 -2.6011 26 6 0.5028 -2.7074 -1.3435 27 1 -0.4849 0.8401 0.0004 28 1 -0.2774 -1.8356 1.1506 29 1 2.4972 -3.9827 1.0184 30 1 3.1186 -3.4831 -0.5873 31 1 0.9461 -5.4554 0.0943 32 1 2.0361 -5.4188 -1.3198 33 1 0.0560 -6.6617 -1.7707 34 1 -2.1692 -5.1139 -4.0830 35 1 -3.9848 -6.3166 -5.2657 36 1 -3.7367 -10.7906 -3.0966 37 1 -1.8641 -11.0530 -1.2361 38 1 1.0939 -2.3204 -2.1735 39 1 -0.4729 -2.2225 -1.3129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365297421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:36 Heat of formation + Delta-G solvation = 66.238370 kcal Electronic energy + Delta-G solvation = -26339.918289 eV Core-core repulsion = 22478.790194 eV Total energy + Delta-G solvation = -3861.128096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44861 -40.49008 -38.29525 -37.50224 -35.65573 -34.60103 -32.49151 -32.27560 -31.01233 -30.19960 -28.86404 -28.04782 -25.65504 -24.30898 -23.59625 -22.99676 -21.40638 -20.04410 -19.87471 -18.98357 -17.79112 -17.46639 -17.11756 -16.59019 -16.36402 -15.61200 -15.49516 -15.17591 -14.56464 -14.46442 -14.20601 -13.79402 -13.52165 -13.21681 -13.05623 -12.92954 -12.59348 -12.46972 -12.04403 -11.77617 -11.62343 -11.38025 -11.15369 -10.96744 -10.78777 -10.60407 -10.34040 -10.31152 -9.94430 -9.62207 -9.56119 -9.38438 -8.81640 -8.59544 -8.12316 -7.69351 -6.41675 -4.51684 0.52247 0.92521 1.62881 2.48001 2.52854 3.10247 3.13057 3.21525 3.23767 3.50037 3.76685 3.91700 4.16503 4.20432 4.76742 4.85717 4.95366 5.14859 5.20480 5.34650 5.40955 5.51913 5.66844 5.68932 5.79501 5.83040 5.94945 6.01297 6.30481 6.32333 6.43317 6.53860 6.62971 6.67137 6.87618 7.09577 7.18513 7.35470 7.61683 7.64680 7.84189 7.93903 8.43226 8.52415 9.18462 9.32212 10.65658 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.003107 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.200182 B = 9009.252958 C = 9644.938697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.251 3.749 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.095 3.905 13 N -0.609 5.609 14 C 0.720 3.280 15 O -0.561 6.561 16 N -0.666 5.666 17 C 0.451 3.549 18 C -0.268 4.268 19 C 0.206 3.794 20 N -0.499 5.499 21 C 0.288 3.712 22 C -0.283 4.283 23 C 0.094 3.906 24 N -0.329 5.329 25 N -0.332 5.332 26 C 0.108 3.892 27 H 0.273 0.727 28 H 0.387 0.613 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.419 0.581 34 H 0.205 0.795 35 H 0.182 0.818 36 H 0.161 0.839 37 H 0.196 0.804 38 H 0.066 0.934 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -13.830 -5.661 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.027 4.027 13 N -0.344 5.344 14 C 0.422 3.578 15 O -0.438 6.438 16 N -0.313 5.313 17 C 0.236 3.764 18 C -0.296 4.296 19 C 0.025 3.975 20 N -0.214 5.214 21 C 0.059 3.941 22 C -0.314 4.314 23 C -0.085 4.085 24 N -0.153 5.153 25 N -0.109 5.109 26 C -0.013 4.013 27 H 0.083 0.917 28 H 0.240 0.760 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.222 0.778 35 H 0.199 0.801 36 H 0.178 0.822 37 H 0.213 0.787 38 H 0.085 0.915 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.800 -13.776 -5.571 14.969 hybrid contribution 0.451 1.006 0.159 1.114 sum -1.349 -12.770 -5.411 13.935 Atomic orbital electron populations 1.69552 1.06061 1.28239 1.49451 1.25097 0.95070 0.99935 0.93113 0.86350 0.79776 0.82141 0.78366 1.20317 1.20911 1.19635 1.21472 0.93766 0.89849 1.52658 0.91277 1.19630 0.85712 0.91794 0.81917 1.86076 1.51105 1.53070 1.49099 1.22616 0.97804 0.94418 1.00460 1.22144 0.89529 0.96950 0.94123 1.48046 1.28850 1.10181 1.47294 1.15259 0.82276 0.79378 0.80903 1.90744 1.40576 1.64327 1.48188 1.42479 1.26578 1.07098 1.55170 1.17394 0.89557 0.79044 0.90404 1.22730 1.01145 1.06268 0.99438 1.23315 0.91531 0.88332 0.94279 1.68255 1.27462 1.10299 1.15377 1.20793 0.87201 0.94204 0.91875 1.20890 1.08834 0.94959 1.06747 1.23772 0.92672 0.96083 0.95947 1.77749 1.24661 0.99530 1.13395 1.47285 1.25968 1.08926 1.28677 1.23491 1.02998 0.73925 1.00918 0.91699 0.76007 0.90341 0.90113 0.91926 0.92484 0.74396 0.77848 0.80119 0.82153 0.78719 0.91544 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.59 10.72 55.43 0.59 -21.99 16 2 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.91 19.36 29.54 -169.99 -5.02 14.34 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -13.13 8.25 -34.44 -0.28 -13.41 16 8 H 0.07 1.64 7.77 -52.49 -0.41 1.24 16 9 C 0.25 5.63 0.89 -89.50 -0.08 5.55 16 10 O -0.58 -14.21 13.19 -35.23 -0.46 -14.68 16 11 C -0.12 -2.08 6.12 -24.89 -0.15 -2.23 16 12 C 0.10 1.52 6.15 -3.06 -0.02 1.50 16 13 N -0.61 -11.36 3.32 -176.10 -0.59 -11.95 16 14 C 0.72 13.10 8.39 -86.92 -0.73 12.37 16 15 O -0.56 -11.36 13.30 5.30 0.07 -11.29 16 16 N -0.67 -10.21 5.33 -15.60 -0.08 -10.30 16 17 C 0.45 6.94 7.60 -152.50 -1.16 5.78 16 18 C -0.27 -3.78 8.88 -39.63 -0.35 -4.13 16 19 C 0.21 2.48 11.25 -17.20 -0.19 2.29 16 20 N -0.50 -6.97 10.48 -12.34 -0.13 -7.10 16 21 C 0.29 4.23 7.92 -155.53 -1.23 2.99 16 22 C -0.28 -3.46 10.92 -39.17 -0.43 -3.89 16 23 C 0.09 1.06 11.95 -17.57 -0.21 0.85 16 24 N -0.33 -4.72 12.66 30.48 0.39 -4.33 16 25 N -0.33 -5.06 3.92 -11.51 -0.05 -5.11 16 26 C 0.11 2.35 5.65 -2.41 -0.01 2.34 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.39 9.84 6.93 45.56 0.32 10.15 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.42 5.74 7.81 -40.82 -0.32 5.42 16 34 H 0.21 3.07 5.14 -52.94 -0.27 2.80 16 35 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.20 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 39 H 0.09 2.15 7.64 -51.93 -0.40 1.76 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -29.00 331.30 -8.82 -37.82 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -3.58 Total: 17.92 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -4.95 Total: 11.67 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.14 Total: -60.77 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.39 Total: -25.96 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.00 -8.82 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365297421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.054 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds