Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99535 * 2 1 4 4 H 1.48504 * 109.46963 * 269.99456 * 3 2 1 5 5 H 1.48498 * 109.47278 * 29.99692 * 3 2 1 6 6 H 1.48506 * 109.47104 * 150.00001 * 3 2 1 7 7 C 1.37879 * 120.00693 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99543 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00221 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46967 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99875 * 193.94996 * 10 9 7 12 12 C 1.50703 * 109.46867 * 66.05048 * 11 10 9 13 13 C 1.38678 * 120.41380 * 269.71658 * 12 11 10 14 14 C 1.38628 * 118.41724 * 179.78352 * 13 12 11 15 15 C 1.38226 * 119.16143 * 0.51708 * 14 13 12 16 16 N 1.31856 * 120.76487 * 359.72090 * 15 14 13 17 17 C 1.31886 * 121.72532 * 0.02562 * 16 15 14 18 18 C 1.46905 * 110.99958 * 70.00006 * 10 9 7 19 19 N 1.46505 * 109.46965 * 293.95364 * 18 10 9 20 20 C 1.34781 * 126.58672 * 95.00278 * 19 18 10 21 21 C 1.36672 * 106.83670 * 179.97438 * 20 19 18 22 22 C 1.47384 * 125.78297 * 179.97438 * 21 20 19 23 23 O 1.21516 * 119.99870 * 359.97438 * 22 21 20 24 24 O 1.34747 * 119.99927 * 179.97438 * 22 21 20 25 25 N 1.34440 * 108.43554 * 359.97438 * 21 20 19 26 26 N 1.28760 * 109.51404 * 359.97438 * 25 21 20 27 27 H 0.96996 * 120.00352 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46948 * 60.00054 * 9 7 2 29 29 H 1.08998 * 109.46771 * 299.99364 * 9 7 2 30 30 H 1.09005 * 109.47114 * 186.04418 * 11 10 9 31 31 H 1.09002 * 109.47344 * 306.04676 * 11 10 9 32 32 H 1.07997 * 120.79199 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.42057 * 180.21839 * 14 13 12 34 34 H 1.07998 * 119.62148 * 179.74818 * 15 14 13 35 35 H 1.07997 * 119.61956 * 179.97438 * 17 16 15 36 36 H 1.08995 * 109.47373 * 173.95395 * 18 10 9 37 37 H 1.08996 * 109.47400 * 53.95340 * 18 10 9 38 38 H 1.07992 * 126.58124 * 359.97438 * 20 19 18 39 39 H 0.96704 * 116.99516 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 7 4.0014 -2.5788 0.0022 11 6 5.4316 -2.6312 0.3334 12 6 5.6346 -2.1780 1.7563 13 6 5.8636 -0.8403 2.0412 14 6 6.0402 -0.4685 3.3649 15 6 5.9933 -1.4382 4.3489 16 7 5.7782 -2.7020 4.0406 17 6 5.6009 -3.0911 2.7929 18 6 3.7352 -3.2324 -1.2862 19 7 2.2889 -3.3743 -1.4722 20 6 1.4781 -2.5296 -2.1398 21 6 0.2160 -3.0481 -2.0622 22 6 -0.9973 -2.4547 -2.6522 23 8 -0.9239 -1.4123 -3.2723 24 8 -2.1878 -3.0681 -2.5039 25 7 0.2686 -4.1912 -1.3565 26 7 1.4828 -4.4158 -0.9915 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6798 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 5.7930 -3.6536 0.2227 31 1 5.9846 -1.9755 -0.3392 32 1 5.8996 -0.1050 1.2509 33 1 6.2171 0.5650 3.6238 34 1 6.1340 -1.1574 5.3822 35 1 5.4276 -4.1353 2.5790 36 1 4.2012 -4.2176 -1.2970 37 1 4.1475 -2.6266 -2.0930 38 1 1.7698 -1.6181 -2.6401 39 1 -2.9552 -2.6406 -2.9083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = 77.786064 kcal Electronic energy + Delta-G solvation = -26786.789329 eV Core-core repulsion = 22926.161978 eV Total energy + Delta-G solvation = -3860.627350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45897 -40.08693 -39.06211 -37.37676 -35.36567 -33.55359 -32.85272 -32.02776 -31.21376 -30.20931 -28.55253 -26.71972 -24.30607 -23.69290 -23.43366 -22.33926 -21.39477 -20.55241 -20.16379 -17.65476 -17.40641 -16.96305 -16.83918 -16.23161 -15.67513 -15.33054 -15.10507 -15.02633 -14.72845 -14.04727 -14.02898 -13.83189 -13.42901 -13.18461 -12.98180 -12.95527 -12.78413 -12.41623 -12.30602 -11.82462 -11.33502 -11.27277 -10.95661 -10.89872 -10.72858 -10.49800 -10.11387 -10.05856 -10.01608 -9.60199 -9.35689 -9.08669 -8.87727 -8.78803 -8.35667 -7.98839 -6.25661 -4.24389 1.22237 1.42341 1.97756 2.36720 2.82097 3.09776 3.15203 3.20553 3.68078 3.87641 3.99226 4.19888 4.40508 4.57210 4.82972 4.87844 4.99105 5.05694 5.09650 5.11601 5.14629 5.23724 5.40492 5.51636 5.65602 5.77713 5.89245 5.94547 6.17624 6.22420 6.34472 6.37134 6.43206 6.65769 6.82801 7.03748 7.07973 7.30125 7.35650 7.57126 8.11056 8.33796 8.52976 8.79534 8.88712 9.30303 10.83041 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.004883 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.338939 B = 5732.959688 C = 6821.713017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.152 3.848 10 N -0.537 5.537 11 C 0.103 3.897 12 C -0.118 4.118 13 C -0.062 4.062 14 C -0.176 4.176 15 C 0.094 3.906 16 N -0.489 5.489 17 C 0.121 3.879 18 C 0.309 3.691 19 N -0.353 5.353 20 C 0.191 3.809 21 C -0.105 4.105 22 C 0.586 3.414 23 O -0.520 6.520 24 O -0.506 6.506 25 N -0.192 5.192 26 N -0.068 5.068 27 H 0.268 0.732 28 H 0.040 0.960 29 H -0.013 1.013 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.189 0.811 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 -2.376 -2.537 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.111 0.889 9 C 0.026 3.974 10 N -0.262 5.262 11 C -0.026 4.026 12 C -0.121 4.121 13 C -0.089 4.089 14 C -0.196 4.196 15 C -0.063 4.063 16 N -0.197 5.197 17 C -0.036 4.036 18 C 0.097 3.903 19 N -0.138 5.138 20 C 0.035 3.965 21 C -0.241 4.241 22 C 0.429 3.571 23 O -0.407 6.407 24 O -0.316 6.316 25 N -0.069 5.069 26 N -0.049 5.049 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.004 0.996 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.909 -4.338 -0.722 11.762 hybrid contribution 0.318 3.790 -1.694 4.163 sum 11.227 -0.548 -2.416 11.497 Atomic orbital electron populations 1.69857 1.05982 1.27267 1.46674 1.24893 0.94670 0.98540 0.94415 0.86991 0.80393 0.84587 0.78603 1.20066 1.20944 1.19398 1.21374 0.88435 0.95481 1.51795 0.88937 1.20471 0.97740 0.83171 0.96015 1.61888 1.13808 1.21433 1.29077 1.20824 0.88747 1.01205 0.91813 1.20627 1.00376 0.94238 0.96842 1.21516 0.94765 0.95614 0.96961 1.22067 1.02720 1.00989 0.93803 1.22679 0.95610 0.88456 0.99604 1.67683 1.11887 1.18766 1.21394 1.22597 0.93849 1.00050 0.87126 1.21912 0.75779 1.00573 0.91996 1.49922 1.09070 1.18140 1.36711 1.22576 0.89447 0.92880 0.91599 1.19618 0.91987 0.98731 1.13748 1.19077 0.81881 0.80597 0.75524 1.90858 1.86581 1.22519 1.40768 1.84643 1.17936 1.55042 1.73945 1.74571 1.12201 1.13448 1.06646 1.81790 0.94397 1.09564 1.19133 0.92205 0.94175 0.99557 0.89634 0.93835 0.85306 0.85161 0.83157 0.82787 0.87850 0.91529 0.79416 0.73867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.48 13.96 55.43 0.77 -23.70 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.53 -13.31 6.56 -34.44 -0.23 -13.54 16 8 H 0.09 2.58 4.98 -52.48 -0.26 2.32 16 9 C 0.15 3.09 3.62 -4.98 -0.02 3.07 16 10 N -0.54 -9.10 4.65 -241.43 -1.12 -10.23 16 11 C 0.10 1.32 5.14 -4.98 -0.03 1.29 16 12 C -0.12 -1.70 4.92 -104.48 -0.51 -2.21 16 13 C -0.06 -0.88 8.02 -39.28 -0.32 -1.20 16 14 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 15 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 16 N -0.49 -7.53 10.36 -13.25 -0.14 -7.67 16 17 C 0.12 1.78 10.86 -17.55 -0.19 1.59 16 18 C 0.31 4.58 6.20 -63.31 -0.39 4.18 16 19 N -0.35 -6.67 2.46 -64.06 -0.16 -6.83 16 20 C 0.19 3.85 7.62 -16.82 -0.13 3.72 16 21 C -0.11 -2.30 6.65 -83.57 -0.56 -2.86 16 22 C 0.59 12.41 8.33 34.45 0.29 12.70 16 23 O -0.52 -11.74 17.65 -19.28 -0.34 -12.08 16 24 O -0.51 -9.04 13.43 -40.62 -0.55 -9.58 16 25 N -0.19 -4.32 12.39 32.83 0.41 -3.91 16 26 N -0.07 -1.44 13.42 60.35 0.81 -0.63 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.86 4.35 -51.93 -0.23 0.63 16 29 H -0.01 -0.26 7.41 -51.93 -0.39 -0.64 16 30 H 0.09 0.86 7.88 -51.93 -0.41 0.45 16 31 H 0.04 0.49 8.07 -51.93 -0.42 0.08 16 32 H 0.13 1.74 7.82 -52.49 -0.41 1.33 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.10 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 38 H 0.19 3.60 8.04 -52.49 -0.42 3.18 16 39 H 0.40 4.89 9.11 45.56 0.42 5.30 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -34.17 337.33 -6.05 -40.22 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.38 Total: 7.14 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.77 Total: 7.15 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.57 Total: -52.96 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.89 Total: -21.66 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.17 -6.05 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.011 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds