Wall clock time and date at job start Tue Mar 31 2020 11:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00395 * 2 1 4 4 H 1.48503 * 109.47091 * 270.00205 * 3 2 1 5 5 H 1.48502 * 109.47193 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.47314 * 150.00170 * 3 2 1 7 7 C 1.37887 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99355 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46703 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47030 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46724 * 180.02562 * 11 10 9 13 13 C 1.34755 * 116.99695 * 179.97438 * 12 11 10 14 14 O 1.21506 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.47457 * 120.00152 * 179.97438 * 13 12 11 16 16 C 1.39805 * 120.07856 * 180.02562 * 15 13 12 17 17 C 1.37650 * 119.91918 * 179.72557 * 16 15 13 18 18 C 1.39146 * 120.07899 * 0.23345 * 17 16 15 19 19 N 1.39415 * 119.92119 * 180.02562 * 18 17 16 20 20 C 1.34768 * 120.00326 * 33.55005 * 19 18 17 21 21 O 1.21281 * 119.99864 * 5.28085 * 20 19 18 22 22 C 1.50699 * 120.00306 * 185.28362 * 20 19 18 23 23 C 1.53002 * 117.49652 * 248.62531 * 22 20 19 24 24 C 1.52997 * 117.49960 * 180.02562 * 22 20 19 25 25 C 1.39154 * 120.16020 * 0.02562 * 18 17 16 26 26 C 1.37648 * 120.07340 * 359.97438 * 25 18 17 27 27 H 0.97002 * 119.99764 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47199 * 60.00183 * 9 7 2 29 29 H 1.08999 * 109.47295 * 299.99956 * 9 7 2 30 30 H 1.09008 * 109.47216 * 60.00113 * 10 9 7 31 31 H 1.08999 * 109.47176 * 299.99989 * 10 9 7 32 32 H 1.08994 * 109.47088 * 60.00011 * 11 10 9 33 33 H 1.09007 * 109.46990 * 299.99737 * 11 10 9 34 34 H 1.08001 * 120.04114 * 359.97438 * 16 15 13 35 35 H 1.07998 * 119.96197 * 180.25218 * 17 16 15 36 36 H 0.97005 * 119.99829 * 213.55296 * 19 18 17 37 37 H 1.08999 * 115.55136 * 34.32539 * 22 20 19 38 38 H 1.09007 * 117.49985 * 359.97438 * 23 22 20 39 39 H 1.08998 * 117.50157 * 145.02391 * 23 22 20 40 40 H 1.09006 * 117.49760 * 214.97435 * 24 22 20 41 41 H 1.08998 * 117.49962 * 359.97364 * 24 22 20 42 42 H 1.08001 * 119.96319 * 180.02562 * 25 18 17 43 43 H 1.08002 * 120.03481 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5515 -2.6368 -0.0022 12 8 6.0353 -4.0058 -0.0039 13 6 7.3712 -4.1825 -0.0047 14 8 8.1114 -3.2189 -0.0034 15 6 7.9348 -5.5451 -0.0058 16 6 9.3206 -5.7302 -0.0060 17 6 9.8431 -7.0036 -0.0014 18 6 8.9939 -8.1059 -0.0015 19 7 9.5267 -9.3942 0.0038 20 6 10.6808 -9.6436 0.6534 21 8 11.2061 -8.7716 1.3128 22 6 11.3188 -11.0057 0.5606 23 6 11.3335 -11.8665 1.8254 24 6 12.6278 -11.2261 1.3213 25 6 7.6141 -7.9255 -0.0067 26 6 7.0846 -6.6549 -0.0113 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6806 0.8888 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1500 -0.8925 31 1 3.6584 -3.1511 0.8875 32 1 5.9148 -2.1237 0.8881 33 1 5.9148 -2.1223 -0.8919 34 1 9.9803 -4.8751 -0.0058 35 1 10.9135 -7.1474 0.0025 36 1 9.0667 -10.1112 -0.4603 37 1 11.1995 -11.5166 -0.3949 38 1 10.8822 -11.4474 2.7248 39 1 11.2240 -12.9440 1.7022 40 1 13.3700 -11.8821 0.8663 41 1 13.0279 -10.3857 1.8885 42 1 6.9580 -8.7833 -0.0063 43 1 6.0137 -6.5156 -0.0150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025026894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:05 Heat of formation + Delta-G solvation = -78.641394 kcal Electronic energy + Delta-G solvation = -24345.862402 eV Core-core repulsion = 20549.699440 eV Total energy + Delta-G solvation = -3796.162961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22649 -40.29738 -38.86176 -36.82608 -36.40863 -35.24722 -34.05835 -31.88876 -31.35125 -30.56410 -27.63143 -25.91294 -23.84985 -23.29033 -23.02392 -22.58590 -20.90023 -20.60254 -20.22380 -18.46005 -17.94184 -17.67318 -17.02051 -16.42825 -16.31973 -15.93353 -15.60040 -15.16508 -14.86561 -14.35796 -14.25098 -14.18707 -13.72514 -13.53600 -13.20458 -13.11867 -12.73497 -12.68033 -12.32996 -12.15642 -11.92866 -11.60012 -11.26355 -11.21473 -11.04778 -10.94757 -10.82446 -10.63022 -10.42194 -10.36791 -9.99566 -9.79361 -9.71631 -9.33204 -9.24291 -8.60617 -8.56092 -6.06593 -4.05502 0.38730 1.07657 1.81271 2.36737 2.55432 2.82231 3.20553 3.30745 3.38383 3.42217 3.56554 3.96346 4.13534 4.24264 4.41819 4.43778 4.52356 4.60490 4.74889 4.98351 5.00020 5.06662 5.13505 5.15998 5.26940 5.33067 5.48340 5.51400 5.52445 5.66887 5.76089 5.85236 5.89124 6.01131 6.08616 6.38167 6.40315 6.53859 6.67287 6.77473 6.81276 7.22165 7.33610 7.51760 7.73119 7.89275 8.50210 8.97660 9.55080 11.06546 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041052 B = 0.001775 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.897915 B =15775.252283 C =16243.551155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.067 3.933 12 O -0.352 6.352 13 C 0.505 3.495 14 O -0.511 6.511 15 C -0.138 4.138 16 C -0.034 4.034 17 C -0.137 4.137 18 C 0.176 3.824 19 N -0.670 5.670 20 C 0.543 3.457 21 O -0.513 6.513 22 C -0.199 4.199 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.160 4.160 26 C -0.038 4.038 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.415 0.585 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.084 -27.151 -0.619 36.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.049 4.049 10 C -0.139 4.139 11 C -0.006 4.006 12 O -0.268 6.268 13 C 0.350 3.650 14 O -0.401 6.401 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.157 4.157 18 C 0.082 3.918 19 N -0.314 5.314 20 C 0.331 3.669 21 O -0.387 6.387 22 C -0.220 4.220 23 C -0.188 4.188 24 C -0.182 4.182 25 C -0.180 4.180 26 C -0.057 4.057 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 24.534 -26.138 -0.139 35.849 hybrid contribution 0.028 0.694 -0.360 0.782 sum 24.562 -25.444 -0.499 35.369 Atomic orbital electron populations 1.69910 1.06280 1.26965 1.50873 1.25014 0.94754 0.99171 0.94447 0.86785 0.80401 0.83572 0.78600 1.20211 1.21279 1.18959 1.21059 0.89051 0.94665 1.51203 0.90792 1.19525 0.97515 0.91099 0.96713 1.21564 0.88707 1.00798 1.02824 1.23519 0.97015 0.77897 1.02206 1.86540 1.22587 1.34333 1.83379 1.21042 0.81436 0.89475 0.73034 1.90827 1.60697 1.42507 1.46112 1.19217 0.93902 0.90678 1.10163 1.21161 0.93406 0.97499 0.93250 1.21032 1.00704 0.90670 1.03269 1.17976 0.92347 0.84419 0.97106 1.43421 1.24712 1.09704 1.53552 1.19906 0.79867 0.89229 0.77926 1.90757 1.62037 1.46890 1.39013 1.22177 1.04885 0.95324 0.99591 1.22996 1.01432 0.98913 0.95486 1.22999 0.90068 1.03403 1.01747 1.20875 0.92752 0.98161 1.06219 1.21355 1.00813 0.90632 0.92874 0.92659 0.96242 0.96691 0.91507 0.91487 0.91428 0.91441 0.84078 0.84077 0.74865 0.85323 0.88010 0.87413 0.87559 0.87182 0.84678 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 11 C 0.07 1.18 5.48 37.16 0.20 1.39 16 12 O -0.35 -5.80 9.46 -40.64 -0.38 -6.19 16 13 C 0.51 8.04 7.89 34.49 0.27 8.31 16 14 O -0.51 -9.36 16.13 -19.27 -0.31 -9.67 16 15 C -0.14 -1.77 5.87 -104.97 -0.62 -2.38 16 16 C -0.03 -0.41 9.58 -39.21 -0.38 -0.78 16 17 C -0.14 -1.45 8.62 -39.46 -0.34 -1.79 16 18 C 0.18 1.57 6.27 -83.73 -0.53 1.05 16 19 N -0.67 -4.14 5.32 -9.86 -0.05 -4.19 16 20 C 0.54 4.13 7.34 -10.99 -0.08 4.05 16 21 O -0.51 -5.94 13.94 5.56 0.08 -5.86 16 22 C -0.20 -0.86 6.19 -91.77 -0.57 -1.43 16 23 C -0.15 -0.55 10.23 -26.75 -0.27 -0.83 16 24 C -0.14 -0.64 10.04 -26.75 -0.27 -0.91 16 25 C -0.16 -1.32 9.94 -39.46 -0.39 -1.72 16 26 C -0.04 -0.40 9.60 -39.21 -0.38 -0.77 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 29 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.14 1.64 7.64 -52.49 -0.40 1.24 16 35 H 0.14 1.52 6.41 -52.49 -0.34 1.18 16 36 H 0.41 1.09 8.81 -40.82 -0.36 0.73 16 37 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 0.68 7.67 -51.93 -0.40 0.28 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.15 1.43 7.60 -52.49 -0.40 1.03 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -35.05 371.19 -9.06 -44.11 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.05 Total: -2.23 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -4.03 Total: -11.69 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.72 Total: -31.21 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.62 Total: -21.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.05 -9.06 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025026894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.532 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds