Wall clock time and date at job start Tue Mar 31 2020 11:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38360 * 119.85620 * 2 1 4 4 C 1.37950 * 120.15077 * 179.69822 * 3 2 1 5 5 C 1.39579 * 119.84991 * 0.28188 * 4 3 2 6 6 C 1.47850 * 120.14345 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00281 * 309.44214 * 6 5 4 8 8 N 1.34779 * 119.99611 * 129.44076 * 6 5 4 9 9 C 1.46918 * 120.63268 * 3.49011 * 8 6 5 10 10 C 1.52759 * 109.01185 * 233.58392 * 9 8 6 11 11 C 1.53038 * 109.38211 * 305.59134 * 10 9 8 12 12 C 1.53044 * 109.54119 * 61.23591 * 11 10 9 13 13 H 1.09000 * 109.49383 * 58.58975 * 12 11 10 14 14 C 1.50701 * 109.50033 * 178.68399 * 12 11 10 15 15 O 1.21217 * 119.99649 * 359.83841 * 14 12 11 16 16 O 1.34308 * 120.00325 * 179.83623 * 14 12 11 17 17 C 1.34914 * 117.00238 * 180.02562 * 16 14 12 18 18 H 1.08001 * 120.00042 * 359.97438 * 17 16 14 19 19 C 1.38756 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31442 * 120.00293 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99861 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47003 * 90.00532 * 21 19 17 23 23 H 1.48507 * 109.47170 * 210.00089 * 21 19 17 24 24 H 1.48495 * 109.47592 * 330.00478 * 21 19 17 25 25 C 1.46928 * 120.62654 * 183.76961 * 8 6 5 26 26 C 1.39573 * 119.71173 * 359.97438 * 5 4 3 27 27 C 1.37953 * 119.85284 * 0.02562 * 26 5 4 28 28 H 1.09009 * 109.46754 * 89.99816 * 1 2 3 29 29 H 1.08997 * 109.47125 * 209.99292 * 1 2 3 30 30 H 1.08991 * 109.47217 * 329.99884 * 1 2 3 31 31 H 1.08006 * 119.92654 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.08039 * 180.25524 * 4 3 2 33 33 H 1.09006 * 109.58726 * 353.41946 * 9 8 6 34 34 H 1.08997 * 109.59005 * 113.84253 * 9 8 6 35 35 H 1.09002 * 109.57074 * 185.55296 * 10 9 8 36 36 H 1.08999 * 109.38713 * 65.51036 * 10 9 8 37 37 H 1.08998 * 109.45900 * 301.21429 * 11 10 9 38 38 H 1.09000 * 109.46344 * 181.25898 * 11 10 9 39 39 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.58727 * 246.15632 * 25 8 6 41 41 H 1.08997 * 109.58556 * 6.58332 * 25 8 6 42 42 H 1.08004 * 120.07395 * 180.02562 * 26 5 4 43 43 H 1.08003 * 119.92776 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2071 0.0063 5 6 4.2762 0.0000 0.0067 6 6 5.7547 0.0001 0.0140 7 8 6.3664 0.6709 -0.7942 8 7 6.4241 -0.7437 0.9169 9 6 5.7009 -1.6182 1.8501 10 6 6.1357 -1.2905 3.2774 11 6 7.6597 -1.3861 3.3787 12 6 8.3005 -0.3693 2.4312 13 1 7.9615 0.6336 2.6908 14 6 9.8006 -0.4418 2.5554 15 8 10.3076 -1.2267 3.3275 16 8 10.5759 0.3632 1.8105 17 6 11.9105 0.2472 1.9697 18 1 12.3103 -0.4691 2.6721 19 6 12.7696 1.0489 1.2317 20 7 14.0699 0.9356 1.3864 21 14 12.0780 2.2884 0.0173 22 1 11.8581 3.5859 0.7053 23 1 13.0391 2.4768 -1.0991 24 1 10.7873 1.7880 -0.5199 25 6 7.8905 -0.6908 0.9906 26 6 3.5753 -1.2069 0.0013 27 6 2.1958 -1.1999 -0.0050 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.6522 2.1333 -0.0004 32 1 4.1117 2.1444 0.0104 33 1 4.6282 -1.4527 1.7493 34 1 5.9342 -2.6599 1.6301 35 1 5.6800 -1.9986 3.9695 36 1 5.8172 -0.2791 3.5295 37 1 7.9796 -2.3910 3.1031 38 1 7.9697 -1.1745 4.4020 39 1 14.6705 1.4958 0.8703 40 1 8.3061 -1.6553 0.6990 41 1 8.2621 0.0864 0.3228 42 1 4.1118 -2.1443 0.0020 43 1 1.6522 -2.1332 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047820169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:39 Heat of formation + Delta-G solvation = -91.430718 kcal Electronic energy + Delta-G solvation = -26358.917320 eV Core-core repulsion = 22562.199771 eV Total energy + Delta-G solvation = -3796.717548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79612 -39.53143 -38.72027 -37.23618 -35.36677 -33.59148 -32.54014 -32.30750 -31.52530 -31.13016 -27.92911 -25.96716 -25.29568 -23.92285 -22.93583 -22.42485 -21.34379 -19.73190 -19.24595 -17.97350 -17.63920 -16.58294 -16.48704 -15.88258 -15.78186 -15.20379 -15.07804 -14.73860 -14.48225 -14.15731 -14.09013 -13.89437 -13.79811 -13.67810 -13.31275 -12.97536 -12.81843 -12.59660 -12.44240 -12.25277 -12.02199 -11.92802 -11.50282 -11.37351 -11.12967 -10.97271 -10.89830 -10.58054 -10.43628 -10.32469 -9.95632 -9.67394 -9.27882 -9.16938 -8.97206 -8.68731 -8.65197 -6.35174 -4.11037 0.69861 1.03897 2.55632 2.80812 3.18096 3.29399 3.39832 3.43217 3.47841 4.06253 4.24995 4.29436 4.44994 4.50956 4.62379 4.79304 4.83701 4.85202 4.94017 5.02079 5.04386 5.18377 5.20746 5.26325 5.30793 5.36145 5.39682 5.53641 5.63774 5.68247 5.70788 5.78616 5.89097 5.94377 6.02311 6.08874 6.19086 6.19631 6.32026 6.38663 6.53998 6.57724 7.29363 7.74205 8.05003 8.06874 8.61477 9.03376 9.69496 10.72983 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.003255 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.073381 B = 8599.437616 C = 9637.126274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.124 4.124 4 C -0.066 4.066 5 C -0.125 4.125 6 C 0.558 3.442 7 O -0.528 6.528 8 N -0.603 5.603 9 C 0.094 3.906 10 C -0.134 4.134 11 C -0.101 4.101 12 C -0.084 4.084 13 H 0.099 0.901 14 C 0.414 3.586 15 O -0.537 6.537 16 O -0.248 6.248 17 C -0.382 4.382 18 H 0.109 0.891 19 C 0.068 3.932 20 N -0.874 5.874 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.256 1.256 25 C 0.121 3.879 26 C -0.087 4.087 27 C -0.126 4.126 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.279 0.721 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.038 -3.555 -1.189 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.128 4.128 6 C 0.346 3.654 7 O -0.404 6.404 8 N -0.336 5.336 9 C -0.028 4.028 10 C -0.172 4.172 11 C -0.139 4.139 12 C -0.105 4.105 13 H 0.117 0.883 14 C 0.258 3.742 15 O -0.431 6.431 16 O -0.156 6.156 17 C -0.457 4.457 18 H 0.127 0.873 19 C -0.136 4.136 20 N -0.513 5.513 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.180 1.180 25 C -0.001 4.001 26 C -0.106 4.106 27 C -0.144 4.144 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.337 -3.323 -1.507 28.571 hybrid contribution 0.078 0.545 -0.409 0.686 sum -28.260 -2.778 -1.916 28.460 Atomic orbital electron populations 1.20847 0.90921 1.03043 1.02601 1.20113 0.96319 0.93149 0.97478 1.21007 0.93716 0.97890 1.01595 1.21171 0.94005 0.97236 0.96073 1.19885 0.92873 0.94697 1.05350 1.18417 0.87074 0.79082 0.80863 1.90835 1.69273 1.42093 1.38191 1.48054 1.07231 1.43640 1.34688 1.22032 0.97512 0.94113 0.89150 1.21877 0.96555 1.02750 0.96008 1.21373 0.93307 0.99285 0.99943 1.21157 0.90270 1.02179 0.96859 0.88315 1.22640 0.89041 0.81208 0.81270 1.90598 1.75440 1.38816 1.38289 1.83536 1.20476 1.54711 1.56885 1.20643 0.75925 1.23468 1.25703 0.87302 1.24537 0.94280 0.97445 0.97358 1.69605 1.01608 1.39379 1.40726 0.86283 0.79812 0.81032 0.80343 1.19858 1.20706 1.17983 1.21614 0.78262 1.04135 0.96054 1.21312 0.94375 0.97097 0.97802 1.20974 0.93708 0.97840 1.01873 0.90869 0.91292 0.91304 0.85400 0.85141 0.88804 0.90883 0.90117 0.91333 0.90754 0.90481 0.91029 0.90485 0.87488 0.85151 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.00 0.36 -0.20 16 2 C -0.07 -0.52 5.89 -104.53 -0.62 -1.13 16 3 C -0.12 -1.02 9.68 -39.64 -0.38 -1.41 16 4 C -0.07 -0.70 9.74 -39.19 -0.38 -1.08 16 5 C -0.12 -1.44 5.00 -104.97 -0.53 -1.96 16 6 C 0.56 8.26 7.24 -12.33 -0.09 8.17 16 7 O -0.53 -10.08 16.47 5.32 0.09 -9.99 16 8 N -0.60 -8.15 2.98 -174.15 -0.52 -8.67 16 9 C 0.09 0.92 5.34 -3.94 -0.02 0.90 16 10 C -0.13 -1.33 6.06 -26.84 -0.16 -1.49 16 11 C -0.10 -1.40 4.46 -26.69 -0.12 -1.52 16 12 C -0.08 -1.45 2.78 -91.65 -0.25 -1.70 16 13 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.41 9.68 7.21 36.01 0.26 9.94 16 15 O -0.54 -14.02 15.22 -19.06 -0.29 -14.31 16 16 O -0.25 -6.64 8.51 -20.68 -0.18 -6.82 16 17 C -0.38 -11.50 10.10 30.92 0.31 -11.19 16 18 H 0.11 3.59 7.09 -52.49 -0.37 3.22 16 19 C 0.07 1.98 5.49 -17.53 -0.10 1.89 16 20 N -0.87 -26.31 13.96 55.48 0.77 -25.53 16 21 Si 0.90 22.26 28.62 -169.99 -4.86 17.40 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.12 2.00 5.64 -3.71 -0.02 1.98 16 26 C -0.09 -0.78 7.36 -39.19 -0.29 -1.07 16 27 C -0.13 -0.93 9.68 -39.64 -0.38 -1.31 16 28 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.09 0.76 4.56 -51.93 -0.24 0.52 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.28 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.11 2.05 7.02 -51.93 -0.36 1.69 16 42 H 0.13 0.98 7.07 -52.48 -0.37 0.61 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -35.64 358.18 -7.96 -43.60 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.96 Total: 0.10 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.41 Total: -1.19 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.26 Total: -34.20 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.38 Total: -31.12 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.64 -7.96 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047820169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.826 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds