Wall clock time and date at job start Tue Mar 31 2020 11:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38360 * 119.85620 * 2 1 4 4 C 1.37950 * 120.15077 * 179.69822 * 3 2 1 5 5 C 1.39579 * 119.84991 * 0.28188 * 4 3 2 6 6 C 1.47850 * 120.14345 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00281 * 309.44214 * 6 5 4 8 8 N 1.34779 * 119.99611 * 129.44076 * 6 5 4 9 9 C 1.46918 * 120.63268 * 3.49011 * 8 6 5 10 10 C 1.52759 * 109.01185 * 233.58392 * 9 8 6 11 11 C 1.53038 * 109.38211 * 305.59134 * 10 9 8 12 12 C 1.53044 * 109.54119 * 61.23591 * 11 10 9 13 13 H 1.09000 * 109.49383 * 58.58975 * 12 11 10 14 14 C 1.50701 * 109.50033 * 178.68399 * 12 11 10 15 15 O 1.21217 * 119.99649 * 359.83841 * 14 12 11 16 16 O 1.34308 * 120.00325 * 179.83623 * 14 12 11 17 17 C 1.34914 * 117.00238 * 180.02562 * 16 14 12 18 18 H 1.08001 * 120.00042 * 359.97438 * 17 16 14 19 19 C 1.38756 * 120.00037 * 180.02562 * 17 16 14 20 20 N 1.31442 * 120.00293 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99861 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47003 * 90.00532 * 21 19 17 23 23 H 1.48507 * 109.47170 * 210.00089 * 21 19 17 24 24 H 1.48495 * 109.47592 * 330.00478 * 21 19 17 25 25 C 1.46928 * 120.62654 * 183.76961 * 8 6 5 26 26 C 1.39573 * 119.71173 * 359.97438 * 5 4 3 27 27 C 1.37953 * 119.85284 * 0.02562 * 26 5 4 28 28 H 1.09009 * 109.46754 * 89.99816 * 1 2 3 29 29 H 1.08997 * 109.47125 * 209.99292 * 1 2 3 30 30 H 1.08991 * 109.47217 * 329.99884 * 1 2 3 31 31 H 1.08006 * 119.92654 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.08039 * 180.25524 * 4 3 2 33 33 H 1.09006 * 109.58726 * 353.41946 * 9 8 6 34 34 H 1.08997 * 109.59005 * 113.84253 * 9 8 6 35 35 H 1.09002 * 109.57074 * 185.55296 * 10 9 8 36 36 H 1.08999 * 109.38713 * 65.51036 * 10 9 8 37 37 H 1.08998 * 109.45900 * 301.21429 * 11 10 9 38 38 H 1.09000 * 109.46344 * 181.25898 * 11 10 9 39 39 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.58727 * 246.15632 * 25 8 6 41 41 H 1.08997 * 109.58556 * 6.58332 * 25 8 6 42 42 H 1.08004 * 120.07395 * 180.02562 * 26 5 4 43 43 H 1.08003 * 119.92776 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2071 0.0063 5 6 4.2762 0.0000 0.0067 6 6 5.7547 0.0001 0.0140 7 8 6.3664 0.6709 -0.7942 8 7 6.4241 -0.7437 0.9169 9 6 5.7009 -1.6182 1.8501 10 6 6.1357 -1.2905 3.2774 11 6 7.6597 -1.3861 3.3787 12 6 8.3005 -0.3693 2.4312 13 1 7.9615 0.6336 2.6908 14 6 9.8006 -0.4418 2.5554 15 8 10.3076 -1.2267 3.3275 16 8 10.5759 0.3632 1.8105 17 6 11.9105 0.2472 1.9697 18 1 12.3103 -0.4691 2.6721 19 6 12.7696 1.0489 1.2317 20 7 14.0699 0.9356 1.3864 21 14 12.0780 2.2884 0.0173 22 1 11.8581 3.5859 0.7053 23 1 13.0391 2.4768 -1.0991 24 1 10.7873 1.7880 -0.5199 25 6 7.8905 -0.6908 0.9906 26 6 3.5753 -1.2069 0.0013 27 6 2.1958 -1.1999 -0.0050 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.6522 2.1333 -0.0004 32 1 4.1117 2.1444 0.0104 33 1 4.6282 -1.4527 1.7493 34 1 5.9342 -2.6599 1.6301 35 1 5.6800 -1.9986 3.9695 36 1 5.8172 -0.2791 3.5295 37 1 7.9796 -2.3910 3.1031 38 1 7.9697 -1.1745 4.4020 39 1 14.6705 1.4958 0.8703 40 1 8.3061 -1.6553 0.6990 41 1 8.2621 0.0864 0.3228 42 1 4.1118 -2.1443 0.0020 43 1 1.6522 -2.1332 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047820169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:38 Heat of formation + Delta-G solvation = -113.347188 kcal Electronic energy + Delta-G solvation = -26359.867689 eV Core-core repulsion = 22562.199771 eV Total energy + Delta-G solvation = -3797.667918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93182 -41.18595 -39.69818 -38.54147 -37.35610 -34.64597 -34.48048 -33.45056 -32.54574 -31.89926 -28.64470 -27.90761 -26.38060 -25.30942 -23.64076 -23.29330 -22.47190 -21.18025 -20.41022 -20.20049 -18.90190 -18.26331 -17.59328 -17.06000 -16.92867 -16.59496 -16.29710 -16.01194 -15.63108 -15.47731 -15.32487 -14.90780 -14.62802 -14.56945 -14.43466 -14.29903 -14.25693 -14.04496 -13.63849 -13.27265 -12.97004 -12.89478 -12.71003 -12.53216 -12.41291 -12.34785 -12.09539 -12.03927 -11.91993 -11.85435 -11.70037 -11.25402 -10.95690 -10.88880 -9.93055 -9.87275 -9.57878 -8.60816 -6.46298 -0.01263 0.41111 1.15982 1.27957 1.39162 1.48493 1.57247 1.80666 2.20626 2.36833 2.74356 2.85173 3.34096 3.63055 3.68472 3.80337 3.89914 3.95691 4.01930 4.02778 4.07464 4.39042 4.41548 4.44251 4.46862 4.53195 4.61389 4.73460 4.77758 4.81264 4.84668 4.91212 4.98517 5.10859 5.11083 5.26713 5.31230 5.33001 5.35751 5.41130 5.45045 5.63517 5.84188 5.97426 6.24603 6.45540 6.76966 6.96062 7.52953 8.52031 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.003255 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.073381 B = 8599.437616 C = 9637.126274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.083 4.083 5 C -0.147 4.147 6 C 0.555 3.445 7 O -0.584 6.584 8 N -0.598 5.598 9 C 0.090 3.910 10 C -0.122 4.122 11 C -0.098 4.098 12 C -0.073 4.073 13 H 0.110 0.890 14 C 0.416 3.584 15 O -0.564 6.564 16 O -0.259 6.259 17 C -0.406 4.406 18 H 0.063 0.937 19 C 0.023 3.977 20 N -0.912 5.912 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.261 1.261 24 H -0.262 1.262 25 C 0.128 3.872 26 C -0.086 4.086 27 C -0.121 4.121 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.290 0.710 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.541 -4.038 -1.419 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.150 4.150 6 C 0.345 3.655 7 O -0.464 6.464 8 N -0.329 5.329 9 C -0.031 4.031 10 C -0.160 4.160 11 C -0.136 4.136 12 C -0.094 4.094 13 H 0.128 0.872 14 C 0.262 3.738 15 O -0.460 6.460 16 O -0.168 6.168 17 C -0.482 4.482 18 H 0.081 0.919 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.185 1.185 24 H -0.186 1.186 25 C 0.004 3.996 26 C -0.104 4.104 27 C -0.139 4.139 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.164 0.836 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.163 0.837 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -32.858 -3.842 -1.691 33.125 hybrid contribution 1.382 0.585 -0.242 1.520 sum -31.476 -3.257 -1.933 31.704 Atomic orbital electron populations 1.20922 0.88742 1.04269 1.03430 1.20514 0.97902 0.92699 0.95452 1.21233 0.92709 0.99433 1.01080 1.21202 0.95165 0.96559 0.97308 1.19684 0.90498 0.96277 1.08515 1.19051 0.88581 0.77916 0.79937 1.90794 1.70700 1.44462 1.40475 1.48102 1.05767 1.43909 1.35147 1.22387 0.98455 0.94292 0.87944 1.21867 0.93006 1.04175 0.96948 1.21425 0.96207 0.97669 0.98266 1.21307 0.85251 1.04198 0.98599 0.87241 1.24060 0.91304 0.79217 0.79233 1.90575 1.76681 1.39596 1.39114 1.83570 1.19057 1.56041 1.58158 1.20339 0.77777 1.23889 1.26207 0.91899 1.25416 0.94425 0.99062 0.98846 1.69681 1.02921 1.40607 1.41943 0.85238 0.78978 0.78436 0.78125 1.18324 1.18529 1.18567 1.21279 0.80737 1.03009 0.94542 1.21477 0.95190 0.96461 0.97284 1.21338 0.93049 0.99159 1.00357 0.90075 0.89765 0.90504 0.83603 0.86564 0.86321 0.88871 0.86427 0.91030 0.91126 0.91199 0.89994 0.90414 0.90679 0.83680 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.00 71.24 0.71 0.12 16 2 C -0.07 -0.71 5.89 -19.81 -0.12 -0.83 16 3 C -0.13 -1.79 9.68 22.23 0.22 -1.58 16 4 C -0.08 -1.69 9.74 22.53 0.22 -1.48 16 5 C -0.15 -3.20 5.00 -20.09 -0.10 -3.30 16 6 C 0.55 16.47 7.24 86.79 0.63 17.10 16 7 O -0.58 -23.30 16.47 -3.87 -0.06 -23.37 16 8 N -0.60 -15.64 2.98 -823.16 -2.45 -18.09 16 9 C 0.09 1.46 5.34 86.22 0.46 1.92 16 10 C -0.12 -2.01 6.06 30.53 0.19 -1.82 16 11 C -0.10 -2.58 4.46 30.62 0.14 -2.45 16 12 C -0.07 -2.54 2.78 -11.46 -0.03 -2.57 16 13 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 14 C 0.42 20.23 7.21 71.24 0.51 20.74 16 15 O -0.56 -30.79 15.22 20.75 0.32 -30.48 16 16 O -0.26 -14.49 8.51 14.96 0.13 -14.36 16 17 C -0.41 -25.76 10.10 67.94 0.69 -25.08 16 18 H 0.06 4.46 7.09 -2.91 -0.02 4.44 16 19 C 0.02 1.40 5.49 84.88 0.47 1.87 16 20 N -0.91 -56.45 13.96 21.63 0.30 -56.15 16 21 Si 0.97 46.80 28.62 68.60 1.96 48.77 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.13 4.29 5.64 86.36 0.49 4.77 16 26 C -0.09 -1.26 7.36 22.52 0.17 -1.09 16 27 C -0.12 -1.27 9.68 22.23 0.22 -1.05 16 28 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.08 0.21 8.08 -2.39 -0.02 0.20 16 30 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 31 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.12 1.43 4.56 -2.38 -0.01 1.42 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 38 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 39 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.07 3.03 7.02 -2.39 -0.02 3.01 16 42 H 0.15 1.64 7.07 -2.91 -0.02 1.62 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -83.66 358.18 6.05 -77.61 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.02 Total: 10.81 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 4.84 Total: 5.27 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -2.15 Total: -74.24 kcal Atomic # 8 Polarization: -68.59 SS G_CDS: 0.38 Total: -68.21 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.96 Total: 48.77 kcal Total: -83.66 6.05 -77.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047820169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.740 kcal (2) G-P(sol) polarization free energy of solvation -83.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds