Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47154 * 274.96267 * 3 2 1 5 5 H 1.48493 * 109.47440 * 34.96159 * 3 2 1 6 6 H 1.48503 * 109.47233 * 154.96548 * 3 2 1 7 7 C 1.39932 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00591 * 162.82082 * 7 2 1 9 9 C 1.41449 * 119.99969 * 342.82406 * 7 2 1 10 10 C 1.40793 * 120.17221 * 154.71415 * 9 7 2 11 11 C 1.37715 * 120.04699 * 180.02562 * 10 9 7 12 12 C 1.38364 * 120.41754 * 0.02562 * 11 10 9 13 13 C 1.39925 * 120.35679 * 359.97438 * 12 11 10 14 14 C 1.47765 * 120.03452 * 179.97438 * 13 12 11 15 15 O 1.21462 * 119.99838 * 180.02562 * 14 13 12 16 16 O 1.34703 * 119.99608 * 0.02803 * 14 13 12 17 17 C 1.45205 * 116.99892 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47380 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00087 * 179.97438 * 18 17 16 21 21 C 1.46920 * 120.62925 * 359.71951 * 20 18 17 22 22 C 1.53629 * 108.54232 * 126.36949 * 21 20 18 23 23 C 1.53038 * 109.24244 * 54.85276 * 22 21 20 24 24 C 1.53035 * 109.54035 * 298.51244 * 23 22 21 25 25 C 1.46930 * 120.63083 * 179.97438 * 20 18 17 26 26 C 1.39092 * 119.93392 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.97749 * 0.02654 * 10 9 7 29 29 H 1.08000 * 119.79259 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.81820 * 179.97438 * 12 11 10 31 31 H 1.09000 * 109.46787 * 299.99579 * 17 16 14 32 32 H 1.08999 * 109.47121 * 59.99158 * 17 16 14 33 33 H 1.08999 * 109.58705 * 246.19606 * 21 20 18 34 34 H 1.08994 * 109.58984 * 6.62863 * 21 20 18 35 35 H 1.09002 * 109.63260 * 294.86292 * 22 21 20 36 36 H 1.09000 * 109.45869 * 174.73926 * 22 21 20 37 37 H 1.09001 * 109.46178 * 178.48960 * 23 22 21 38 38 H 1.09003 * 109.45789 * 58.53629 * 23 22 21 39 39 H 1.08995 * 109.49777 * 301.41252 * 24 23 22 40 40 H 1.09002 * 109.49777 * 181.31538 * 24 23 22 41 41 H 1.09001 * 109.58630 * 353.37636 * 25 20 18 42 42 H 1.08994 * 109.58477 * 113.79952 * 25 20 18 43 43 H 1.08001 * 120.20146 * 179.72148 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8022 6 1 3.5884 1.4122 0.5925 7 6 2.0079 -1.2118 0.0005 8 1 3.0518 -1.2329 -0.2757 9 6 1.3480 -2.4093 0.3628 10 6 1.8168 -3.6480 -0.1149 11 6 1.1720 -4.8123 0.2391 12 6 0.0616 -4.7753 1.0637 13 6 -0.4190 -3.5538 1.5483 14 6 -1.6057 -3.5225 2.4281 15 8 -2.0226 -2.4617 2.8480 16 8 -2.2252 -4.6703 2.7644 17 6 -3.3850 -4.5639 3.6315 18 6 -3.9417 -5.9389 3.8969 19 8 -3.4134 -6.9127 3.4034 20 7 -5.0268 -6.0865 4.6826 21 6 -5.6741 -4.9171 5.2924 22 6 -7.1666 -4.9398 4.9288 23 6 -7.7681 -6.2822 5.3510 24 6 -7.0713 -7.4158 4.5952 25 6 -5.5815 -7.4206 4.9500 26 6 0.2209 -2.3689 1.2002 27 1 -0.4850 0.8400 -0.0004 28 1 2.6826 -3.6852 -0.7593 29 1 1.5349 -5.7602 -0.1301 30 1 -0.4369 -5.6943 1.3348 31 1 -3.0925 -4.1019 4.5744 32 1 -4.1457 -3.9515 3.1474 33 1 -5.5584 -4.9587 6.3754 34 1 -5.2171 -4.0050 4.9088 35 1 -7.2834 -4.8112 3.8527 36 1 -7.6796 -4.1313 5.4496 37 1 -8.8331 -6.2920 5.1191 38 1 -7.6290 -6.4213 6.4232 39 1 -7.1890 -7.2639 3.5223 40 1 -7.5160 -8.3696 4.8790 41 1 -5.0631 -8.1608 4.3405 42 1 -5.4583 -7.6625 6.0056 43 1 -0.1490 -1.4232 1.5681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051534962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = -109.058770 kcal Electronic energy + Delta-G solvation = -25706.138054 eV Core-core repulsion = 21908.656096 eV Total energy + Delta-G solvation = -3797.481958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52753 -39.60642 -37.64261 -37.24376 -35.69088 -33.74802 -33.30050 -31.63562 -30.47080 -29.51632 -28.60189 -25.53735 -25.26507 -23.66335 -22.95506 -21.24129 -20.97357 -19.88479 -19.28662 -18.03518 -17.13271 -16.76261 -16.42694 -16.03912 -15.62984 -15.15693 -14.96267 -14.83297 -14.61374 -14.27007 -14.16901 -13.66050 -13.42919 -13.32710 -13.02076 -12.71648 -12.61416 -12.56104 -12.13270 -11.68819 -11.66314 -11.35182 -11.19801 -11.09995 -11.08500 -10.94408 -10.77557 -10.52889 -10.44041 -10.25818 -9.88314 -9.71120 -9.51958 -9.24297 -8.92925 -7.75067 -7.54367 -6.82538 -4.43641 1.94115 2.36636 2.44476 2.77867 3.06400 3.09271 3.14431 3.35883 3.55407 3.90238 4.23173 4.36287 4.47901 4.56982 4.57882 4.70590 4.90279 5.00815 5.07749 5.13392 5.14756 5.37149 5.42667 5.47267 5.53879 5.55265 5.60084 5.66991 5.72285 5.93963 6.13991 6.22740 6.45707 6.58740 6.84658 6.93573 6.97043 7.07580 7.16901 7.31010 7.68872 7.75661 7.90699 7.98673 8.09941 8.43730 8.47405 8.76822 8.79006 10.13067 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002652 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682636 B =10555.658804 C =11576.152275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.094 3.906 10 C -0.197 4.197 11 C -0.105 4.105 12 C -0.188 4.188 13 C -0.115 4.115 14 C 0.514 3.486 15 O -0.518 6.518 16 O -0.332 6.332 17 C 0.049 3.951 18 C 0.520 3.480 19 O -0.513 6.513 20 N -0.614 5.614 21 C 0.102 3.898 22 C -0.137 4.137 23 C -0.120 4.120 24 C -0.136 4.136 25 C 0.113 3.887 26 C -0.088 4.088 27 H 0.284 0.716 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -7.943 10.747 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.217 4.217 11 C -0.123 4.123 12 C -0.208 4.208 13 C -0.116 4.116 14 C 0.361 3.639 15 O -0.408 6.408 16 O -0.248 6.248 17 C -0.029 4.029 18 C 0.307 3.693 19 O -0.387 6.387 20 N -0.351 5.351 21 C -0.021 4.021 22 C -0.175 4.175 23 C -0.158 4.158 24 C -0.174 4.174 25 C -0.009 4.009 26 C -0.108 4.108 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.217 -8.001 10.590 19.450 hybrid contribution 0.001 0.948 0.091 0.952 sum -14.216 -7.053 10.680 19.129 Atomic orbital electron populations 1.69776 1.07588 1.29704 1.34332 1.25953 0.94781 1.01555 0.92256 0.86261 0.80697 0.80529 0.79067 1.19517 1.19939 1.18343 1.19551 0.98005 0.90831 1.40571 0.89956 1.17539 0.91196 0.92640 0.89445 1.21216 1.03057 0.92769 1.04689 1.20534 0.96136 0.96992 0.98658 1.20663 0.99963 0.95576 1.04606 1.18781 0.94756 0.96031 1.02073 1.22006 0.83014 0.80511 0.78329 1.90757 1.65386 1.31348 1.53291 1.86697 1.40318 1.36046 1.61764 1.22551 0.89074 0.95041 0.96254 1.20190 0.80029 0.90753 0.78331 1.90741 1.58351 1.40623 1.48961 1.48005 1.29216 1.08148 1.49756 1.21939 0.93401 0.88261 0.98519 1.22010 0.94941 0.98138 1.02430 1.21519 0.99675 0.94366 1.00203 1.21923 0.95002 0.99215 1.01251 1.21588 0.93690 0.84362 1.01297 1.21645 0.96506 0.95834 0.96770 0.90491 0.88274 0.88413 0.87506 0.88532 0.88506 0.90772 0.89411 0.91172 0.90413 0.91574 0.91680 0.91351 0.90609 0.88755 0.91404 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.60 10.96 55.55 0.61 -19.99 16 2 C 0.07 1.82 5.15 -17.35 -0.09 1.73 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.09 2.49 5.57 -106.87 -0.59 1.89 16 10 C -0.20 -4.72 9.78 -38.81 -0.38 -5.10 16 11 C -0.10 -2.34 10.01 -39.73 -0.40 -2.73 16 12 C -0.19 -4.34 9.62 -38.90 -0.37 -4.71 16 13 C -0.12 -2.83 5.87 -105.05 -0.62 -3.45 16 14 C 0.51 11.69 7.90 34.63 0.27 11.96 16 15 O -0.52 -12.30 16.12 -19.24 -0.31 -12.61 16 16 O -0.33 -6.69 8.99 -47.18 -0.42 -7.12 16 17 C 0.05 0.74 4.30 36.00 0.15 0.89 16 18 C 0.52 7.64 7.78 -10.99 -0.09 7.56 16 19 O -0.51 -9.59 15.91 -14.10 -0.22 -9.81 16 20 N -0.61 -6.55 2.97 -172.53 -0.51 -7.06 16 21 C 0.10 0.77 6.37 -3.49 -0.02 0.75 16 22 C -0.14 -0.87 6.10 -26.38 -0.16 -1.03 16 23 C -0.12 -0.70 5.88 -26.69 -0.16 -0.86 16 24 C -0.14 -0.95 6.08 -26.63 -0.16 -1.11 16 25 C 0.11 1.02 6.43 -3.73 -0.02 0.99 16 26 C -0.09 -2.34 8.24 -38.43 -0.32 -2.66 16 27 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.11 2.32 7.59 -52.48 -0.40 1.92 16 31 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.10 1.32 7.70 -51.93 -0.40 0.92 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.66 5.93 -51.93 -0.31 0.35 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 1.03 7.01 -51.93 -0.36 0.66 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.14 3.82 5.76 -52.49 -0.30 3.51 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -31.42 359.34 -9.73 -41.15 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.96 Total: 4.71 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.29 Total: -8.19 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.10 Total: -27.05 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.96 Total: -29.53 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.42 -9.73 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.905 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds