Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47154 * 274.96267 * 3 2 1 5 5 H 1.48493 * 109.47440 * 34.96159 * 3 2 1 6 6 H 1.48503 * 109.47233 * 154.96548 * 3 2 1 7 7 C 1.39932 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00591 * 162.82082 * 7 2 1 9 9 C 1.41449 * 119.99969 * 342.82406 * 7 2 1 10 10 C 1.40793 * 120.17221 * 154.71415 * 9 7 2 11 11 C 1.37715 * 120.04699 * 180.02562 * 10 9 7 12 12 C 1.38364 * 120.41754 * 0.02562 * 11 10 9 13 13 C 1.39925 * 120.35679 * 359.97438 * 12 11 10 14 14 C 1.47765 * 120.03452 * 179.97438 * 13 12 11 15 15 O 1.21462 * 119.99838 * 180.02562 * 14 13 12 16 16 O 1.34703 * 119.99608 * 0.02803 * 14 13 12 17 17 C 1.45205 * 116.99892 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47380 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00087 * 179.97438 * 18 17 16 21 21 C 1.46920 * 120.62925 * 359.71951 * 20 18 17 22 22 C 1.53629 * 108.54232 * 126.36949 * 21 20 18 23 23 C 1.53038 * 109.24244 * 54.85276 * 22 21 20 24 24 C 1.53035 * 109.54035 * 298.51244 * 23 22 21 25 25 C 1.46930 * 120.63083 * 179.97438 * 20 18 17 26 26 C 1.39092 * 119.93392 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.97749 * 0.02654 * 10 9 7 29 29 H 1.08000 * 119.79259 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.81820 * 179.97438 * 12 11 10 31 31 H 1.09000 * 109.46787 * 299.99579 * 17 16 14 32 32 H 1.08999 * 109.47121 * 59.99158 * 17 16 14 33 33 H 1.08999 * 109.58705 * 246.19606 * 21 20 18 34 34 H 1.08994 * 109.58984 * 6.62863 * 21 20 18 35 35 H 1.09002 * 109.63260 * 294.86292 * 22 21 20 36 36 H 1.09000 * 109.45869 * 174.73926 * 22 21 20 37 37 H 1.09001 * 109.46178 * 178.48960 * 23 22 21 38 38 H 1.09003 * 109.45789 * 58.53629 * 23 22 21 39 39 H 1.08995 * 109.49777 * 301.41252 * 24 23 22 40 40 H 1.09002 * 109.49777 * 181.31538 * 24 23 22 41 41 H 1.09001 * 109.58630 * 353.37636 * 25 20 18 42 42 H 1.08994 * 109.58477 * 113.79952 * 25 20 18 43 43 H 1.08001 * 120.20146 * 179.72148 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8022 6 1 3.5884 1.4122 0.5925 7 6 2.0079 -1.2118 0.0005 8 1 3.0518 -1.2329 -0.2757 9 6 1.3480 -2.4093 0.3628 10 6 1.8168 -3.6480 -0.1149 11 6 1.1720 -4.8123 0.2391 12 6 0.0616 -4.7753 1.0637 13 6 -0.4190 -3.5538 1.5483 14 6 -1.6057 -3.5225 2.4281 15 8 -2.0226 -2.4617 2.8480 16 8 -2.2252 -4.6703 2.7644 17 6 -3.3850 -4.5639 3.6315 18 6 -3.9417 -5.9389 3.8969 19 8 -3.4134 -6.9127 3.4034 20 7 -5.0268 -6.0865 4.6826 21 6 -5.6741 -4.9171 5.2924 22 6 -7.1666 -4.9398 4.9288 23 6 -7.7681 -6.2822 5.3510 24 6 -7.0713 -7.4158 4.5952 25 6 -5.5815 -7.4206 4.9500 26 6 0.2209 -2.3689 1.2002 27 1 -0.4850 0.8400 -0.0004 28 1 2.6826 -3.6852 -0.7593 29 1 1.5349 -5.7602 -0.1301 30 1 -0.4369 -5.6943 1.3348 31 1 -3.0925 -4.1019 4.5744 32 1 -4.1457 -3.9515 3.1474 33 1 -5.5584 -4.9587 6.3754 34 1 -5.2171 -4.0050 4.9088 35 1 -7.2834 -4.8112 3.8527 36 1 -7.6796 -4.1313 5.4496 37 1 -8.8331 -6.2920 5.1191 38 1 -7.6290 -6.4213 6.4232 39 1 -7.1890 -7.2639 3.5223 40 1 -7.5160 -8.3696 4.8790 41 1 -5.0631 -8.1608 4.3405 42 1 -5.4583 -7.6625 6.0056 43 1 -0.1490 -1.4232 1.5681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051534962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = -124.927030 kcal Electronic energy + Delta-G solvation = -25706.826154 eV Core-core repulsion = 21908.656096 eV Total energy + Delta-G solvation = -3798.170057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83121 -41.00527 -39.22815 -38.45149 -37.35212 -35.62556 -34.12626 -32.46608 -32.14380 -31.39537 -29.83671 -27.28447 -26.25728 -24.92352 -24.04736 -22.88124 -22.03364 -21.59807 -20.16645 -19.74417 -18.47741 -18.22383 -17.81840 -17.61118 -17.05089 -16.56743 -16.35187 -16.26786 -15.46319 -15.26832 -15.20203 -14.98503 -14.85749 -14.45693 -14.37992 -14.33502 -13.83085 -13.70499 -13.49836 -13.30004 -13.00264 -12.79934 -12.60136 -12.26578 -12.22722 -12.09278 -11.96751 -11.91454 -11.68125 -11.57400 -11.52325 -11.39647 -11.08730 -10.96147 -9.79610 -9.64650 -9.46255 -8.68504 -6.40284 0.07359 0.94723 1.14435 1.30146 1.39185 1.45071 1.55119 1.74218 2.12132 2.20212 2.71130 3.21511 3.60598 3.73274 3.85040 3.88032 3.94535 3.96883 3.98621 4.08689 4.32464 4.39352 4.45662 4.57222 4.60619 4.77148 4.79485 4.88092 4.89388 5.01491 5.03530 5.09176 5.10459 5.14431 5.21562 5.27144 5.42247 5.42776 5.47432 5.78673 5.87420 5.99255 6.11592 6.20198 6.51238 6.70250 6.85193 6.86705 6.90941 8.29450 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.002652 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.682636 B =10555.658804 C =11576.152275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.492 4.492 8 H 0.088 0.912 9 C 0.066 3.934 10 C -0.201 4.201 11 C -0.100 4.100 12 C -0.185 4.185 13 C -0.128 4.128 14 C 0.519 3.481 15 O -0.535 6.535 16 O -0.339 6.339 17 C 0.042 3.958 18 C 0.519 3.481 19 O -0.563 6.563 20 N -0.603 5.603 21 C 0.092 3.908 22 C -0.135 4.135 23 C -0.117 4.117 24 C -0.131 4.131 25 C 0.107 3.893 26 C -0.118 4.118 27 H 0.289 0.711 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.999 -8.228 11.850 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.521 4.521 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.220 4.220 11 C -0.118 4.118 12 C -0.204 4.204 13 C -0.129 4.129 14 C 0.367 3.633 15 O -0.426 6.426 16 O -0.255 6.255 17 C -0.035 4.035 18 C 0.306 3.694 19 O -0.442 6.442 20 N -0.337 5.337 21 C -0.029 4.029 22 C -0.173 4.173 23 C -0.155 4.155 24 C -0.169 4.169 25 C -0.015 4.015 26 C -0.138 4.138 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.092 -8.305 11.723 20.837 hybrid contribution 0.126 0.881 -0.181 0.908 sum -14.966 -7.424 11.543 20.306 Atomic orbital electron populations 1.69859 1.09239 1.30846 1.35191 1.26867 0.95454 1.04975 0.91174 0.85145 0.79201 0.75668 0.79463 1.18421 1.19525 1.17777 1.19856 0.98480 0.91765 1.41977 0.89366 1.17919 0.91683 0.94072 0.89969 1.21508 1.03534 0.92493 1.04512 1.20939 0.95186 0.98162 0.97470 1.20925 1.00044 0.95425 1.04013 1.19025 0.95432 0.96098 1.02366 1.21679 0.82764 0.80854 0.77997 1.90731 1.65869 1.32091 1.53927 1.86633 1.41829 1.34574 1.62490 1.22945 0.87811 0.96246 0.96482 1.20130 0.80840 0.89716 0.78679 1.90717 1.60317 1.41714 1.51447 1.48120 1.27652 1.09984 1.47975 1.22267 0.94054 0.86914 0.99668 1.22020 0.94014 0.99400 1.01883 1.21530 1.00015 0.93156 1.00764 1.21903 0.93554 1.00954 1.00477 1.21786 0.94707 0.82855 1.02103 1.21469 0.98026 0.95623 0.98654 0.90038 0.86454 0.84435 0.86059 0.86460 0.86949 0.88404 0.89393 0.92554 0.88324 0.90471 0.90235 0.93029 0.88742 0.91122 0.89221 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.51 10.96 21.82 0.24 -44.27 16 2 C 0.03 1.54 5.15 85.25 0.44 1.98 16 3 Si 0.99 38.27 29.59 68.60 2.03 40.30 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.49 -26.13 9.05 23.47 0.21 -25.92 16 8 H 0.09 4.40 7.90 -2.91 -0.02 4.37 16 9 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 10 C -0.20 -9.52 9.78 22.77 0.22 -9.29 16 11 C -0.10 -4.28 10.01 22.18 0.22 -4.06 16 12 C -0.18 -8.41 9.62 22.71 0.22 -8.19 16 13 C -0.13 -6.42 5.87 -20.14 -0.12 -6.54 16 14 C 0.52 24.06 7.90 70.34 0.56 24.62 16 15 O -0.53 -25.97 16.12 19.96 0.32 -25.65 16 16 O -0.34 -13.77 8.99 -49.74 -0.45 -14.22 16 17 C 0.04 1.26 4.30 71.23 0.31 1.56 16 18 C 0.52 15.19 7.78 87.65 0.68 15.87 16 19 O -0.56 -21.52 15.91 15.77 0.25 -21.26 16 20 N -0.60 -12.13 2.97 -818.17 -2.43 -14.56 16 21 C 0.09 1.19 6.37 86.51 0.55 1.74 16 22 C -0.14 -1.38 6.10 30.82 0.19 -1.19 16 23 C -0.12 -1.01 5.88 30.62 0.18 -0.83 16 24 C -0.13 -1.59 6.08 30.66 0.19 -1.40 16 25 C 0.11 1.80 6.43 86.35 0.55 2.36 16 26 C -0.12 -6.51 8.24 23.02 0.19 -6.32 16 27 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 28 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 29 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.12 5.15 7.59 -2.91 -0.02 5.12 16 31 H 0.12 3.00 7.93 -2.39 -0.02 2.98 16 32 H 0.11 3.00 7.70 -2.39 -0.02 2.98 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.15 5.93 -2.39 -0.01 1.13 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.56 7.01 -2.39 -0.02 1.54 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.11 6.61 5.76 -2.91 -0.02 6.59 16 Total: -1.00 -70.72 359.34 5.46 -65.26 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.02 Total: 26.61 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.47 Total: -12.20 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -2.19 Total: -58.83 kcal Atomic # 8 Polarization: -61.26 SS G_CDS: 0.13 Total: -61.13 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -70.72 5.46 -65.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.667 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds