Wall clock time and date at job start Tue Mar 31 2020 11:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40795 * 120.17475 * 204.36660 * 9 7 2 11 11 C 1.37719 * 120.04908 * 179.97438 * 10 9 7 12 12 C 1.38353 * 120.41958 * 0.04529 * 11 10 9 13 13 C 1.39924 * 120.35413 * 359.97438 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00128 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47160 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00061 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00270 * 179.97438 * 18 17 16 21 21 C 1.46504 * 120.00268 * 180.02562 * 20 18 17 22 22 C 1.54263 * 110.02853 * 272.90387 * 21 20 18 23 23 C 1.54961 * 104.15959 * 217.13449 * 22 21 20 24 24 C 1.54889 * 102.77981 * 37.89385 * 23 22 21 25 25 C 1.53879 * 110.03054 * 155.68925 * 21 20 18 26 26 C 1.39093 * 119.93722 * 359.97438 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97670 * 0.04212 * 10 9 7 29 29 H 1.07998 * 119.78600 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.82356 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 32 32 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 33 33 H 0.97001 * 119.99989 * 0.02562 * 20 18 17 34 34 H 1.09000 * 110.01863 * 34.29652 * 21 20 18 35 35 H 1.08996 * 110.49101 * 335.78617 * 22 21 20 36 36 H 1.09002 * 110.48292 * 98.42751 * 22 21 20 37 37 H 1.08995 * 110.72538 * 279.57548 * 23 22 21 38 38 H 1.09002 * 110.92214 * 156.29969 * 23 22 21 39 39 H 1.08991 * 110.48897 * 203.40401 * 24 23 22 40 40 H 1.09003 * 110.60077 * 80.81147 * 24 23 22 41 41 H 1.08997 * 110.02899 * 238.56136 * 25 21 20 42 42 H 1.08997 * 110.03403 * 359.97438 * 25 21 20 43 43 H 1.08004 * 120.19890 * 179.72209 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8272 -3.6501 0.0860 11 6 1.1860 -4.8125 -0.2805 12 6 0.0738 -4.7699 -1.1022 13 6 -0.4131 -3.5445 -1.5702 14 6 -1.6019 -3.5072 -2.4470 15 8 -2.0244 -2.4431 -2.8526 16 8 -2.2172 -4.6534 -2.7966 17 6 -3.3787 -4.5412 -3.6607 18 6 -3.9293 -5.9152 -3.9431 19 8 -3.3958 -6.8929 -3.4630 20 7 -5.0153 -6.0577 -4.7284 21 6 -5.5510 -7.3935 -5.0025 22 6 -4.8365 -8.0090 -6.2232 23 6 -5.9538 -8.7855 -6.9648 24 6 -7.1839 -7.8593 -6.7972 25 6 -7.0430 -7.2985 -5.3669 26 6 0.2224 -2.3613 -1.2084 27 1 -0.4850 0.8400 -0.0004 28 1 2.6946 -3.6916 0.7281 29 1 1.5541 -5.7634 0.0756 30 1 -0.4218 -5.6874 -1.3832 31 1 -4.1412 -3.9380 -3.1680 32 1 -3.0894 -4.0664 -4.5983 33 1 -5.4423 -5.2759 -5.1122 34 1 -5.4196 -8.0343 -4.1306 35 1 -4.4284 -7.2255 -6.8617 36 1 -4.0478 -8.6889 -5.9008 37 1 -6.1307 -9.7518 -6.4925 38 1 -5.7063 -8.9119 -8.0188 39 1 -8.1073 -8.4301 -6.8938 40 1 -7.1578 -7.0510 -7.5280 41 1 -7.6356 -7.8940 -4.6724 42 1 -7.3686 -6.2586 -5.3393 43 1 -0.1471 -1.4133 -1.5709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:14 Heat of formation + Delta-G solvation = -117.417229 kcal Electronic energy + Delta-G solvation = -25217.975569 eV Core-core repulsion = 21420.131161 eV Total energy + Delta-G solvation = -3797.844408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34671 -39.57595 -37.93404 -37.29482 -35.68775 -33.90902 -33.75344 -30.56338 -29.54512 -29.28403 -29.10507 -27.03119 -25.34357 -23.15674 -21.24265 -21.00483 -20.83757 -20.60758 -19.85757 -18.00306 -17.23855 -16.88799 -16.35925 -16.28021 -15.82186 -15.49271 -15.06407 -14.83771 -14.64675 -14.30636 -13.78787 -13.72037 -13.36530 -13.06828 -12.82830 -12.63245 -12.33826 -12.15019 -11.86873 -11.68402 -11.55994 -11.43440 -11.21179 -11.12893 -11.11163 -11.01361 -10.76311 -10.52203 -10.43371 -10.25220 -9.93064 -9.71189 -9.51763 -9.29578 -9.25106 -7.75245 -7.55393 -6.83547 -4.43771 1.94188 2.47332 2.47777 2.77089 3.06310 3.10900 3.13049 3.53522 3.55821 3.89817 4.14068 4.24589 4.49048 4.57021 4.60572 5.01435 5.08331 5.10320 5.12061 5.14820 5.17800 5.27198 5.41023 5.52386 5.54034 5.59456 5.67372 5.79226 5.87366 5.94378 6.14339 6.29036 6.45758 6.58527 6.84793 6.93493 6.97110 7.16366 7.23594 7.30907 7.68898 7.75794 7.90683 8.05381 8.09843 8.43702 8.47628 8.76502 8.78714 10.11947 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.002301 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.967811 B =12164.527900 C =12896.485250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.198 4.198 11 C -0.105 4.105 12 C -0.189 4.189 13 C -0.115 4.115 14 C 0.514 3.486 15 O -0.518 6.518 16 O -0.331 6.331 17 C 0.047 3.953 18 C 0.517 3.483 19 O -0.512 6.512 20 N -0.727 5.727 21 C 0.142 3.858 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.089 4.089 27 H 0.284 0.716 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.401 0.599 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 -10.143 -11.878 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.091 3.909 10 C -0.218 4.218 11 C -0.123 4.123 12 C -0.209 4.209 13 C -0.116 4.116 14 C 0.361 3.639 15 O -0.408 6.408 16 O -0.248 6.248 17 C -0.031 4.031 18 C 0.302 3.698 19 O -0.385 6.385 20 N -0.381 5.381 21 C 0.037 3.963 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.170 4.170 26 C -0.108 4.108 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.342 -10.386 -11.612 20.512 hybrid contribution -0.110 1.293 -0.227 1.317 sum -13.452 -9.093 -11.839 20.095 Atomic orbital electron populations 1.69791 1.07606 1.29658 1.34190 1.25966 0.94778 1.01604 0.92251 0.86221 0.80915 0.80741 0.78656 1.18301 1.19588 1.19922 1.19589 0.98289 0.90892 1.40091 0.89897 1.17542 0.91161 0.92638 0.89531 1.21208 1.03069 0.92700 1.04842 1.20530 0.96124 0.96993 0.98640 1.20653 0.99940 0.95513 1.04786 1.18781 0.94737 0.95990 1.02117 1.22007 0.83080 0.80574 0.78215 1.90762 1.65214 1.31096 1.53710 1.86696 1.40305 1.35988 1.61781 1.22510 0.89237 0.94964 0.96437 1.20236 0.80379 0.90758 0.78440 1.90753 1.57990 1.40286 1.49492 1.46039 1.30765 1.09442 1.51896 1.21661 0.92345 0.83600 0.98672 1.22827 0.98238 0.99996 0.96476 1.22491 0.94737 0.98532 1.00485 1.22359 0.98467 0.99169 0.96204 1.22448 0.94924 1.02067 0.97532 1.21640 0.96544 0.95891 0.96745 0.90511 0.88283 0.88422 0.87510 0.88450 0.88512 0.76445 0.88932 0.91040 0.90856 0.91226 0.91301 0.91385 0.91429 0.90593 0.90926 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.57 10.95 55.55 0.61 -19.96 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 8 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 9 C 0.09 2.47 5.57 -106.88 -0.60 1.88 16 10 C -0.20 -4.74 9.78 -38.80 -0.38 -5.12 16 11 C -0.10 -2.33 10.01 -39.73 -0.40 -2.72 16 12 C -0.19 -4.35 9.62 -38.91 -0.37 -4.73 16 13 C -0.11 -2.82 5.87 -105.05 -0.62 -3.44 16 14 C 0.51 11.64 7.90 34.63 0.27 11.91 16 15 O -0.52 -12.31 16.12 -19.24 -0.31 -12.62 16 16 O -0.33 -6.59 8.99 -47.18 -0.42 -7.01 16 17 C 0.05 0.68 5.95 36.00 0.21 0.89 16 18 C 0.52 7.14 7.90 -10.99 -0.09 7.05 16 19 O -0.51 -9.28 16.17 -14.11 -0.23 -9.51 16 20 N -0.73 -6.82 5.04 -52.72 -0.27 -7.08 16 21 C 0.14 1.24 3.23 -66.81 -0.22 1.02 16 22 C -0.14 -1.15 6.54 -25.04 -0.16 -1.31 16 23 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 24 C -0.12 -0.67 6.83 -25.07 -0.17 -0.84 16 25 C -0.13 -0.80 6.57 -25.61 -0.17 -0.96 16 26 C -0.09 -2.36 8.23 -38.43 -0.32 -2.68 16 27 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.11 2.31 7.59 -52.49 -0.40 1.91 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 2.55 8.31 -40.82 -0.34 2.21 16 34 H 0.09 0.99 7.59 -51.93 -0.39 0.59 16 35 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.38 7.61 -51.93 -0.40 -0.02 16 43 H 0.14 3.82 5.74 -52.48 -0.30 3.52 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -31.54 365.63 -9.76 -41.30 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.02 Total: 6.43 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.60 Total: -10.56 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.34 Total: -27.05 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.96 Total: -29.14 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.54 -9.76 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.113 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds