Wall clock time and date at job start Tue Mar 31 2020 11:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47091 * 269.99940 * 3 2 1 5 5 H 1.48502 * 109.46767 * 30.00265 * 3 2 1 6 6 H 1.48499 * 109.47009 * 150.00083 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00319 * 197.96490 * 7 2 1 9 9 C 1.41137 * 119.99829 * 17.96774 * 7 2 1 10 10 C 1.40885 * 120.15580 * 204.88540 * 9 7 2 11 11 C 1.36339 * 119.83450 * 180.25159 * 10 9 7 12 12 C 1.39568 * 120.16104 * 359.49800 * 11 10 9 13 13 N 1.38858 * 119.84196 * 180.25499 * 12 11 10 14 14 C 1.46494 * 120.00050 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47241 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.47267 * 304.99754 * 15 14 13 17 17 O 1.42898 * 109.47276 * 65.00051 * 15 14 13 18 18 C 1.53004 * 109.47391 * 185.00474 * 15 14 13 19 19 O 1.42900 * 109.47257 * 175.00098 * 18 15 14 20 20 C 1.42898 * 113.99885 * 179.97438 * 19 18 15 21 21 C 1.50698 * 109.46861 * 179.97438 * 20 19 18 22 22 C 1.34513 * 125.78951 * 90.00254 * 21 20 19 23 23 C 1.41380 * 106.84044 * 179.97438 * 22 21 20 24 24 C 1.34517 * 106.84205 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.78878 * 269.69368 * 21 20 19 26 26 C 1.39569 * 120.31576 * 0.23430 * 12 11 10 27 27 C 1.36338 * 120.16208 * 0.02562 * 26 12 11 28 28 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08388 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.91554 * 179.77799 * 11 10 9 31 31 H 0.97006 * 119.99759 * 359.97438 * 13 12 11 32 32 H 1.08997 * 109.47509 * 300.00283 * 14 13 12 33 33 H 1.09007 * 109.46688 * 60.00407 * 14 13 12 34 34 H 0.96699 * 113.99646 * 60.00249 * 17 15 14 35 35 H 1.09003 * 109.46584 * 294.99740 * 18 15 14 36 36 H 1.08996 * 109.47145 * 55.00033 * 18 15 14 37 37 H 1.08989 * 109.47498 * 299.99902 * 20 19 18 38 38 H 1.09003 * 109.46979 * 60.00264 * 20 19 18 39 39 H 1.07992 * 126.58246 * 0.03794 * 22 21 20 40 40 H 1.08005 * 126.58284 * 179.97438 * 23 22 21 41 41 H 1.08004 * 125.78747 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.91639 * 180.02562 * 26 12 11 43 43 H 1.07992 * 120.08338 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3544 -2.4039 -0.3760 10 6 1.8232 -3.6467 0.0935 11 6 1.1895 -4.7952 -0.2784 12 6 0.0728 -4.7409 -1.1138 13 7 -0.5707 -5.9143 -1.4842 14 6 -1.7436 -5.8613 -2.3604 15 6 -2.2574 -7.2804 -2.6111 16 1 -1.4482 -7.8956 -3.0049 17 8 -2.7277 -7.8406 -1.3836 18 6 -3.4035 -7.2364 -3.6238 19 8 -3.8059 -8.5692 -3.9460 20 6 -4.8772 -8.6409 -4.8890 21 6 -5.2170 -10.0849 -5.1542 22 6 -6.1160 -10.8191 -4.4744 23 6 -6.1144 -12.1085 -5.0544 24 6 -5.2141 -12.0853 -6.0536 25 8 -4.6779 -10.8554 -6.1131 26 6 -0.4006 -3.5128 -1.5782 27 6 0.2263 -2.3567 -1.2186 28 1 -0.4850 0.8400 0.0004 29 1 2.6846 -3.6899 0.7436 30 1 1.5500 -5.7489 0.0778 31 1 -0.2436 -6.7691 -1.1628 32 1 -2.5263 -5.2707 -1.8845 33 1 -1.4676 -5.4014 -3.3094 34 1 -3.4499 -7.3436 -0.9756 35 1 -4.2471 -6.6960 -3.1944 36 1 -3.0695 -6.7289 -4.5288 37 1 -5.7512 -8.1298 -4.4856 38 1 -4.5741 -8.1624 -5.8203 39 1 -6.7233 -10.4872 -3.6455 40 1 -6.7193 -12.9508 -4.7526 41 1 -4.9681 -12.9137 -6.7015 42 1 -1.2656 -3.4783 -2.2240 43 1 -0.1413 -1.4071 -1.5784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:58 Heat of formation + Delta-G solvation = -54.121303 kcal Electronic energy + Delta-G solvation = -24528.656826 eV Core-core repulsion = 20733.557135 eV Total energy + Delta-G solvation = -3795.099690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.86639 -39.00451 -37.93390 -36.89118 -34.66820 -33.36491 -32.91842 -31.58963 -30.23887 -29.45810 -28.41543 -26.35935 -25.21884 -23.67506 -22.21589 -22.08895 -20.95790 -20.72401 -19.98545 -17.88798 -17.38162 -17.20235 -16.79347 -16.46951 -16.23985 -15.84759 -15.25590 -15.03140 -14.92560 -14.49741 -13.94584 -13.78256 -13.18713 -13.15459 -13.13984 -12.89300 -12.64563 -12.54542 -12.39082 -12.04922 -11.93903 -11.66846 -11.25707 -11.04651 -10.93929 -10.80754 -10.47755 -10.26992 -10.14025 -10.03580 -9.69357 -9.29174 -9.24229 -8.89911 -8.55282 -7.50118 -6.64750 -6.39656 -4.03829 1.28037 2.22836 2.58312 2.91077 3.09640 3.15033 3.18615 3.35015 3.39234 4.05297 4.18352 4.34038 4.45998 4.61772 4.67066 4.75668 4.78949 4.81207 4.90708 4.96256 5.00959 5.16234 5.37438 5.45766 5.58093 5.72151 5.78014 5.82889 6.03738 6.14109 6.26569 6.31540 6.71813 6.79202 6.91462 6.93077 7.19879 7.35766 7.53497 7.57712 7.68657 7.83853 8.14857 8.28476 8.48332 8.70119 8.79610 9.05838 9.14760 10.37128 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.001789 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.765473 B =15650.355356 C =16014.657622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.073 3.927 10 C -0.185 4.185 11 C -0.157 4.157 12 C 0.091 3.909 13 N -0.755 5.755 14 C 0.113 3.887 15 C 0.102 3.898 16 H 0.109 0.891 17 O -0.549 6.549 18 C 0.033 3.967 19 O -0.371 6.371 20 C 0.142 3.858 21 C -0.017 4.017 22 C -0.185 4.185 23 C -0.218 4.218 24 C -0.033 4.033 25 O -0.172 6.172 26 C -0.165 4.165 27 C -0.125 4.125 28 H 0.276 0.724 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.389 0.611 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.374 0.626 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.204 0.796 42 H 0.086 0.914 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 -16.742 -10.883 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.205 4.205 11 C -0.179 4.179 12 C -0.005 4.005 13 N -0.392 5.392 14 C -0.014 4.014 15 C 0.042 3.958 16 H 0.127 0.873 17 O -0.354 6.354 18 C -0.044 4.044 19 O -0.291 6.291 20 C 0.065 3.935 21 C -0.067 4.067 22 C -0.204 4.204 23 C -0.237 4.237 24 C -0.101 4.101 25 O -0.068 6.068 26 C -0.187 4.187 27 C -0.145 4.145 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.222 0.778 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.221 0.779 42 H 0.104 0.896 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.897 -16.965 -11.222 24.085 hybrid contribution -0.347 0.959 0.213 1.042 sum -13.243 -16.006 -11.008 23.511 Atomic orbital electron populations 1.69854 1.07362 1.28584 1.37778 1.25796 0.94657 1.00884 0.92710 0.86399 0.80494 0.81187 0.79063 1.19565 1.20597 1.18847 1.19380 0.97964 0.91355 1.41106 0.90906 1.17511 0.92479 0.92025 0.90942 1.20559 1.02765 0.92575 1.04622 1.19825 0.97891 0.97140 1.03091 1.17341 0.95708 0.85493 1.01989 1.43673 1.32187 1.06250 1.57055 1.21523 0.89990 0.94611 0.95238 1.22115 0.94946 0.94955 0.83782 0.87285 1.86626 1.56321 1.55177 1.37235 1.23255 0.97979 0.83933 0.99269 1.88044 1.52219 1.26936 1.61893 1.20617 0.91473 0.87794 0.93583 1.21933 0.98139 0.94165 0.92423 1.21667 1.02488 0.93856 1.02411 1.21876 1.03414 0.98882 0.99556 1.24113 0.97889 0.86086 1.02018 1.84021 1.54970 1.20897 1.46896 1.20072 1.01585 0.91969 1.05110 1.20926 0.98200 0.96406 0.98939 0.91351 0.88996 0.89490 0.77761 0.93000 0.92525 0.77880 0.92288 0.91707 0.89944 0.91423 0.83225 0.83231 0.77904 0.89563 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.41 10.96 55.54 0.61 -20.81 16 2 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.23 29.60 -169.99 -5.03 14.20 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.07 1.99 5.57 -106.79 -0.60 1.39 16 10 C -0.18 -4.62 9.74 -39.26 -0.38 -5.00 16 11 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 12 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 13 N -0.75 -13.08 5.65 -58.50 -0.33 -13.41 16 14 C 0.11 1.55 4.53 -4.05 -0.02 1.53 16 15 C 0.10 1.17 3.28 -26.73 -0.09 1.09 16 16 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 17 O -0.55 -6.90 13.25 -40.08 -0.53 -7.43 16 18 C 0.03 0.31 5.57 37.16 0.21 0.52 16 19 O -0.37 -4.18 10.29 -40.08 -0.41 -4.59 16 20 C 0.14 1.23 6.47 36.00 0.23 1.46 16 21 C -0.02 -0.17 6.95 -35.63 -0.25 -0.42 16 22 C -0.18 -1.72 10.81 -39.70 -0.43 -2.15 16 23 C -0.22 -1.78 10.91 -39.70 -0.43 -2.21 16 24 C -0.03 -0.26 12.09 29.42 0.36 0.09 16 25 O -0.17 -1.82 10.65 5.71 0.06 -1.76 16 26 C -0.17 -3.83 9.23 -39.77 -0.37 -4.20 16 27 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.39 6.38 8.47 -40.82 -0.35 6.04 16 32 H 0.05 0.72 7.93 -51.93 -0.41 0.30 16 33 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.37 3.54 9.05 45.56 0.41 3.95 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.14 -51.94 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.09 1.79 6.68 -52.49 -0.35 1.43 16 43 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -31.95 369.56 -8.76 -40.71 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.21 Total: 12.76 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.48 Total: -25.24 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.28 Total: -34.22 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.88 Total: -13.78 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.95 -8.76 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds