Wall clock time and date at job start Tue Mar 31 2020 11:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47091 * 269.99940 * 3 2 1 5 5 H 1.48502 * 109.46767 * 30.00265 * 3 2 1 6 6 H 1.48499 * 109.47009 * 150.00083 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00319 * 197.96490 * 7 2 1 9 9 C 1.41137 * 119.99829 * 17.96774 * 7 2 1 10 10 C 1.40885 * 120.15580 * 204.88540 * 9 7 2 11 11 C 1.36339 * 119.83450 * 180.25159 * 10 9 7 12 12 C 1.39568 * 120.16104 * 359.49800 * 11 10 9 13 13 N 1.38858 * 119.84196 * 180.25499 * 12 11 10 14 14 C 1.46494 * 120.00050 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47241 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.47267 * 304.99754 * 15 14 13 17 17 O 1.42898 * 109.47276 * 65.00051 * 15 14 13 18 18 C 1.53004 * 109.47391 * 185.00474 * 15 14 13 19 19 O 1.42900 * 109.47257 * 175.00098 * 18 15 14 20 20 C 1.42898 * 113.99885 * 179.97438 * 19 18 15 21 21 C 1.50698 * 109.46861 * 179.97438 * 20 19 18 22 22 C 1.34513 * 125.78951 * 90.00254 * 21 20 19 23 23 C 1.41380 * 106.84044 * 179.97438 * 22 21 20 24 24 C 1.34517 * 106.84205 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.78878 * 269.69368 * 21 20 19 26 26 C 1.39569 * 120.31576 * 0.23430 * 12 11 10 27 27 C 1.36338 * 120.16208 * 0.02562 * 26 12 11 28 28 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08388 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.91554 * 179.77799 * 11 10 9 31 31 H 0.97006 * 119.99759 * 359.97438 * 13 12 11 32 32 H 1.08997 * 109.47509 * 300.00283 * 14 13 12 33 33 H 1.09007 * 109.46688 * 60.00407 * 14 13 12 34 34 H 0.96699 * 113.99646 * 60.00249 * 17 15 14 35 35 H 1.09003 * 109.46584 * 294.99740 * 18 15 14 36 36 H 1.08996 * 109.47145 * 55.00033 * 18 15 14 37 37 H 1.08989 * 109.47498 * 299.99902 * 20 19 18 38 38 H 1.09003 * 109.46979 * 60.00264 * 20 19 18 39 39 H 1.07992 * 126.58246 * 0.03794 * 22 21 20 40 40 H 1.08005 * 126.58284 * 179.97438 * 23 22 21 41 41 H 1.08004 * 125.78747 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.91639 * 180.02562 * 26 12 11 43 43 H 1.07992 * 120.08338 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3544 -2.4039 -0.3760 10 6 1.8232 -3.6467 0.0935 11 6 1.1895 -4.7952 -0.2784 12 6 0.0728 -4.7409 -1.1138 13 7 -0.5707 -5.9143 -1.4842 14 6 -1.7436 -5.8613 -2.3604 15 6 -2.2574 -7.2804 -2.6111 16 1 -1.4482 -7.8956 -3.0049 17 8 -2.7277 -7.8406 -1.3836 18 6 -3.4035 -7.2364 -3.6238 19 8 -3.8059 -8.5692 -3.9460 20 6 -4.8772 -8.6409 -4.8890 21 6 -5.2170 -10.0849 -5.1542 22 6 -6.1160 -10.8191 -4.4744 23 6 -6.1144 -12.1085 -5.0544 24 6 -5.2141 -12.0853 -6.0536 25 8 -4.6779 -10.8554 -6.1131 26 6 -0.4006 -3.5128 -1.5782 27 6 0.2263 -2.3567 -1.2186 28 1 -0.4850 0.8400 0.0004 29 1 2.6846 -3.6899 0.7436 30 1 1.5500 -5.7489 0.0778 31 1 -0.2436 -6.7691 -1.1628 32 1 -2.5263 -5.2707 -1.8845 33 1 -1.4676 -5.4014 -3.3094 34 1 -3.4499 -7.3436 -0.9756 35 1 -4.2471 -6.6960 -3.1944 36 1 -3.0695 -6.7289 -4.5288 37 1 -5.7512 -8.1298 -4.4856 38 1 -4.5741 -8.1624 -5.8203 39 1 -6.7233 -10.4872 -3.6455 40 1 -6.7193 -12.9508 -4.7526 41 1 -4.9681 -12.9137 -6.7015 42 1 -1.2656 -3.4783 -2.2240 43 1 -0.1413 -1.4071 -1.5784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:57 Heat of formation + Delta-G solvation = -75.733325 kcal Electronic energy + Delta-G solvation = -24529.593993 eV Core-core repulsion = 20733.557135 eV Total energy + Delta-G solvation = -3796.036858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.50799 -40.08778 -39.38944 -37.92885 -36.26006 -34.62552 -34.01679 -32.37573 -31.42062 -31.31449 -29.93062 -27.34997 -26.36955 -25.17232 -23.44522 -22.72808 -22.43079 -21.73099 -21.48349 -19.14628 -18.53396 -18.27690 -17.85288 -17.53301 -17.23936 -16.80369 -16.56789 -16.14151 -15.97587 -15.73911 -15.50097 -14.94716 -14.40772 -14.37132 -14.21725 -13.94989 -13.78552 -13.72881 -13.57644 -13.43500 -13.19110 -12.94004 -12.74608 -12.67529 -12.53806 -12.26686 -11.85808 -11.56571 -11.16394 -11.11158 -11.05416 -10.89258 -10.73362 -10.30404 -9.53528 -9.40056 -8.54532 -8.16153 -6.00268 0.62854 1.11119 1.19098 1.40995 1.53337 1.59514 1.61194 1.99481 2.28201 2.54015 2.84725 3.11612 3.48658 3.71559 3.85555 3.97641 3.99377 4.07227 4.09557 4.11445 4.29766 4.35385 4.44130 4.47355 4.49523 4.51254 4.72296 4.87641 4.98028 5.03082 5.06603 5.14435 5.14534 5.28427 5.46423 5.56016 5.69282 5.79783 5.96545 6.05617 6.15658 6.19472 6.40081 6.67364 6.78380 6.87798 7.09214 7.14185 7.29723 8.48962 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.001789 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.765473 B =15650.355356 C =16014.657622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.033 3.967 10 C -0.195 4.195 11 C -0.168 4.168 12 C 0.113 3.887 13 N -0.748 5.748 14 C 0.110 3.890 15 C 0.113 3.887 16 H 0.099 0.901 17 O -0.566 6.566 18 C 0.036 3.964 19 O -0.398 6.398 20 C 0.140 3.860 21 C -0.045 4.045 22 C -0.195 4.195 23 C -0.232 4.232 24 C -0.035 4.035 25 O -0.194 6.194 26 C -0.173 4.173 27 C -0.142 4.142 28 H 0.282 0.718 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.396 0.604 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.387 0.613 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.238 0.762 42 H 0.111 0.889 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 -17.773 -11.689 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.030 3.970 10 C -0.215 4.215 11 C -0.190 4.190 12 C 0.013 3.987 13 N -0.383 5.383 14 C -0.015 4.015 15 C 0.053 3.947 16 H 0.117 0.883 17 O -0.373 6.373 18 C -0.041 4.041 19 O -0.318 6.318 20 C 0.064 3.936 21 C -0.094 4.094 22 C -0.215 4.215 23 C -0.251 4.251 24 C -0.102 4.102 25 O -0.091 6.091 26 C -0.195 4.195 27 C -0.162 4.162 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.230 0.770 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.254 0.746 42 H 0.129 0.871 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.035 -18.039 -12.036 25.831 hybrid contribution -0.104 1.024 0.430 1.115 sum -14.139 -17.015 -11.606 24.982 Atomic orbital electron populations 1.69908 1.08677 1.29789 1.38527 1.26594 0.95478 1.04015 0.91852 0.85294 0.79015 0.76604 0.79262 1.18915 1.19503 1.18625 1.19589 0.98006 0.92799 1.43372 0.91554 1.17847 0.93765 0.92982 0.92415 1.20745 1.03132 0.92888 1.04758 1.20112 0.98123 0.97553 1.03246 1.17440 0.94783 0.86569 0.99887 1.43757 1.32674 1.05041 1.56830 1.21710 0.88668 0.96438 0.94696 1.21928 0.95623 0.92994 0.84150 0.88298 1.86595 1.57071 1.55851 1.37795 1.23211 0.97862 0.83722 0.99285 1.87986 1.53272 1.27850 1.62681 1.20808 0.91659 0.87434 0.93693 1.22326 0.98981 0.95094 0.93018 1.22005 1.02377 0.94464 1.02611 1.22241 1.03955 0.99198 0.99693 1.24891 0.97161 0.85958 1.02237 1.84009 1.55710 1.21966 1.47399 1.20259 1.02210 0.91581 1.05500 1.20876 0.98775 0.96833 0.99766 0.90725 0.88690 0.86824 0.76959 0.92372 0.91851 0.76382 0.90202 0.90352 0.87739 0.90479 0.82127 0.81169 0.74556 0.87144 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.63 10.96 21.82 0.24 -45.39 16 2 C 0.03 1.71 5.13 85.23 0.44 2.15 16 3 Si 0.98 40.08 29.60 68.60 2.03 42.11 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.51 -28.60 9.03 23.38 0.21 -28.39 16 8 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 9 C 0.03 1.83 5.57 -21.27 -0.12 1.71 16 10 C -0.20 -9.89 9.74 22.47 0.22 -9.67 16 11 C -0.17 -7.48 9.82 22.15 0.22 -7.26 16 12 C 0.11 4.73 6.67 38.67 0.26 4.99 16 13 N -0.75 -24.15 5.65 -339.00 -1.91 -26.07 16 14 C 0.11 2.73 4.53 86.38 0.39 3.12 16 15 C 0.11 2.34 3.28 30.59 0.10 2.44 16 16 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 17 O -0.57 -13.00 13.25 -144.34 -1.91 -14.91 16 18 C 0.04 0.58 5.57 71.98 0.40 0.98 16 19 O -0.40 -8.23 10.29 -144.34 -1.49 -9.71 16 20 C 0.14 2.20 6.47 71.24 0.46 2.66 16 21 C -0.04 -0.87 6.95 24.83 0.17 -0.70 16 22 C -0.20 -3.41 10.81 22.19 0.24 -3.17 16 23 C -0.23 -3.43 10.91 22.19 0.24 -3.18 16 24 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 25 O -0.19 -3.96 10.65 -2.47 -0.03 -3.98 16 26 C -0.17 -7.91 9.23 22.15 0.20 -7.71 16 27 C -0.14 -7.61 8.64 22.48 0.19 -7.41 16 28 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 29 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.40 12.00 8.47 -92.70 -0.79 11.21 16 32 H 0.06 1.42 7.93 -2.39 -0.02 1.41 16 33 H 0.06 1.55 7.93 -2.38 -0.02 1.53 16 34 H 0.39 6.40 9.05 -74.06 -0.67 5.73 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.24 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.11 4.39 6.68 -2.91 -0.02 4.37 16 43 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 Total: -1.00 -70.54 369.56 0.95 -69.59 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.42 Total: 37.49 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 4.44 Total: -49.13 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.67 Total: -71.46 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -3.42 Total: -28.61 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -70.54 0.95 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.148 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds