Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47195 * 274.81475 * 3 2 1 5 5 H 1.48502 * 109.47246 * 34.81777 * 3 2 1 6 6 H 1.48506 * 109.47038 * 154.81315 * 3 2 1 7 7 C 1.39929 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00049 * 341.21374 * 7 2 1 9 9 C 1.41429 * 120.00406 * 161.21262 * 7 2 1 10 10 C 1.40793 * 120.17831 * 331.82135 * 9 7 2 11 11 C 1.37710 * 120.03982 * 179.97438 * 10 9 7 12 12 C 1.38368 * 120.41625 * 359.76368 * 11 10 9 13 13 C 1.39888 * 120.35304 * 0.51755 * 12 11 10 14 14 C 1.47884 * 120.02162 * 179.73774 * 13 12 11 15 15 O 1.21555 * 120.00072 * 144.71723 * 14 13 12 16 16 N 1.34781 * 120.00086 * 324.71739 * 14 13 12 17 17 C 1.46916 * 120.62754 * 173.95664 * 16 14 13 18 18 C 1.53202 * 108.78310 * 126.14700 * 17 16 14 19 19 C 1.52987 * 109.32996 * 54.40161 * 18 17 16 20 20 C 1.52998 * 109.90582 * 299.07941 * 19 18 17 21 21 C 1.46916 * 120.62823 * 353.93050 * 16 14 13 22 22 O 1.43306 * 109.65129 * 59.66239 * 19 18 17 23 23 C 1.44209 * 107.26756 * 120.32185 * 22 19 18 24 24 C 1.54919 * 103.23717 * 21.32249 * 23 22 19 25 25 O 1.43713 * 109.39748 * 178.96727 * 19 18 17 26 26 C 1.39025 * 119.95059 * 359.46095 * 13 12 11 27 27 H 0.97003 * 119.99968 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97251 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.79272 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.82828 * 180.25557 * 12 11 10 31 31 H 1.09001 * 109.58813 * 6.35767 * 17 16 14 32 32 H 1.08998 * 109.58445 * 245.93690 * 17 16 14 33 33 H 1.08996 * 109.49881 * 294.43739 * 18 17 16 34 34 H 1.09007 * 109.51578 * 174.36961 * 18 17 16 35 35 H 1.09005 * 109.49268 * 180.89163 * 20 19 18 36 36 H 1.08999 * 109.49245 * 300.97757 * 20 19 18 37 37 H 1.09001 * 109.59302 * 353.65096 * 21 16 14 38 38 H 1.09001 * 109.59075 * 114.07520 * 21 16 14 39 39 H 1.08999 * 110.69893 * 139.81192 * 23 22 19 40 40 H 1.09001 * 110.69650 * 262.84513 * 23 22 19 41 41 H 1.08998 * 110.97539 * 82.66680 * 24 23 22 42 42 H 1.08999 * 110.97967 * 206.45056 * 24 23 22 43 43 H 1.08001 * 120.20113 * 180.29777 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3879 2.1053 -1.3951 5 1 1.4942 2.6212 0.7994 6 1 3.5870 1.4131 0.5959 7 6 2.0080 -1.2118 -0.0005 8 1 1.5112 -2.1224 0.3003 9 6 3.3658 -1.2442 -0.3950 10 6 3.8602 -0.2942 -1.3089 11 6 5.1829 -0.3281 -1.6906 12 6 6.0356 -1.2895 -1.1776 13 6 5.5610 -2.2452 -0.2731 14 6 6.4774 -3.2730 0.2662 15 8 6.3503 -3.6601 1.4114 16 7 7.4537 -3.7805 -0.5122 17 6 8.4525 -4.7023 0.0456 18 6 8.4759 -5.9771 -0.8038 19 6 8.7076 -5.6049 -2.2695 20 6 7.5704 -4.7096 -2.7656 21 6 7.5389 -3.4229 -1.9346 22 8 9.9563 -4.9139 -2.3997 23 6 10.7799 -5.6839 -3.2987 24 6 9.7496 -6.5337 -4.0838 25 8 8.7539 -6.8014 -3.0643 26 6 4.2285 -2.2246 0.1230 27 1 -0.4850 0.8401 0.0004 28 1 3.2019 0.4621 -1.7100 29 1 5.5581 0.4029 -2.3916 30 1 7.0722 -1.3048 -1.4804 31 1 8.1858 -4.9524 1.0725 32 1 9.4355 -4.2318 0.0254 33 1 7.5226 -6.4966 -0.7067 34 1 9.2811 -6.6277 -0.4621 35 1 7.7339 -4.4615 -3.8144 36 1 6.6212 -5.2347 -2.6592 37 1 6.6694 -2.8283 -2.2147 38 1 8.4488 -2.8499 -2.1136 39 1 11.3319 -5.0285 -3.9724 40 1 11.4631 -6.3250 -2.7417 41 1 9.3196 -5.9631 -4.9070 42 1 10.2005 -7.4579 -4.4453 43 1 3.8589 -2.9575 0.8248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052361162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = -91.355568 kcal Electronic energy + Delta-G solvation = -26956.447726 eV Core-core repulsion = 23159.733437 eV Total energy + Delta-G solvation = -3796.714289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12609 -39.62542 -37.44629 -36.35198 -35.21904 -33.79611 -32.37685 -31.39863 -30.40064 -29.97854 -28.91565 -25.42254 -24.91520 -23.75394 -23.30150 -22.40971 -20.73816 -20.62514 -19.14731 -17.75270 -17.43644 -16.78475 -16.16350 -15.97788 -15.81632 -15.47325 -15.07748 -14.78732 -14.43893 -14.14901 -13.97370 -13.66784 -13.57824 -13.25849 -13.03700 -12.79743 -12.65983 -12.47606 -12.24919 -12.10883 -11.98745 -11.67896 -11.41690 -11.33638 -11.06331 -10.96290 -10.80770 -10.53221 -10.46810 -9.97588 -9.78137 -9.66002 -9.44520 -9.03516 -8.47323 -7.87167 -7.72284 -7.03328 -4.56605 2.00113 2.49603 3.04677 3.09003 3.17372 3.23086 3.26379 3.48894 3.71269 3.92198 4.23592 4.41144 4.48304 4.50953 4.64654 4.81063 4.98042 5.00565 5.15086 5.24250 5.26251 5.29870 5.37529 5.44907 5.46449 5.67676 5.72640 5.85991 5.89894 5.93801 5.95843 6.07926 6.14759 6.36659 6.63487 6.67721 6.76317 6.85408 6.97694 7.21566 7.39331 7.50043 7.68719 7.74002 7.95617 8.25689 8.51653 8.63391 8.69812 9.98566 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.003178 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.116713 B = 8808.675426 C = 9054.824508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.093 0.907 9 C 0.085 3.915 10 C -0.227 4.227 11 C -0.081 4.081 12 C -0.227 4.227 13 C -0.101 4.101 14 C 0.568 3.432 15 O -0.546 6.546 16 N -0.613 5.613 17 C 0.120 3.880 18 C -0.133 4.133 19 C 0.259 3.741 20 C -0.152 4.152 21 C 0.101 3.899 22 O -0.371 6.371 23 C 0.020 3.980 24 C 0.015 3.985 25 O -0.373 6.373 26 C -0.144 4.144 27 H 0.287 0.713 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 -8.141 -9.036 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.111 0.889 9 C 0.082 3.918 10 C -0.246 4.246 11 C -0.099 4.099 12 C -0.246 4.246 13 C -0.104 4.104 14 C 0.360 3.640 15 O -0.424 6.424 16 N -0.347 5.347 17 C -0.003 4.003 18 C -0.171 4.171 19 C 0.183 3.817 20 C -0.191 4.191 21 C -0.022 4.022 22 O -0.292 6.292 23 C -0.057 4.057 24 C -0.062 4.062 25 O -0.293 6.293 26 C -0.164 4.164 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.970 -8.263 -8.242 21.427 hybrid contribution 0.361 0.659 -0.378 0.841 sum 18.332 -7.604 -8.620 21.637 Atomic orbital electron populations 1.69693 1.08142 1.30478 1.34207 1.26181 0.94748 1.01851 0.90836 0.86306 0.81396 0.79604 0.78830 1.19543 1.21729 1.16613 1.19528 0.93169 0.96362 1.37766 0.88895 1.17663 0.93021 0.90969 0.90141 1.21162 0.95875 1.03986 1.03614 1.20518 0.93730 0.97011 0.98625 1.20577 0.98756 1.00449 1.04848 1.19366 0.94249 0.96643 1.00136 1.18916 0.79282 0.80899 0.84941 1.90698 1.71724 1.61383 1.18599 1.47961 1.29352 1.47159 1.10268 1.21407 0.92030 0.88477 0.98354 1.22200 1.03807 0.98845 0.92295 1.23349 0.85373 0.81025 0.91987 1.22562 0.98538 0.97386 1.00568 1.22217 1.04713 0.95819 0.79439 1.88922 1.25938 1.47755 1.66634 1.24168 0.94358 0.94965 0.92192 1.24400 0.88420 1.01152 0.92178 1.89305 1.60198 1.36705 1.43095 1.21144 0.91231 1.02398 1.01622 0.90259 0.87912 0.88253 0.87608 0.88532 0.91042 0.89668 0.89945 0.90178 0.89508 0.86142 0.91063 0.88348 0.90760 0.90575 0.87482 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.02 13.93 55.55 0.77 -20.25 16 2 C 0.08 2.16 5.40 -17.35 -0.09 2.06 16 3 Si 0.91 20.41 24.49 -169.99 -4.16 16.25 16 4 H -0.27 -5.75 6.65 56.52 0.38 -5.38 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.24 -5.62 6.87 56.52 0.39 -5.23 16 7 C -0.44 -11.77 9.57 -37.73 -0.36 -12.13 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.09 2.13 5.14 -106.87 -0.55 1.58 16 10 C -0.23 -5.24 7.19 -38.81 -0.28 -5.52 16 11 C -0.08 -1.62 10.01 -39.73 -0.40 -2.02 16 12 C -0.23 -4.40 7.36 -38.92 -0.29 -4.68 16 13 C -0.10 -2.17 5.28 -105.04 -0.55 -2.72 16 14 C 0.57 11.50 7.38 -12.31 -0.09 11.41 16 15 O -0.55 -12.57 16.23 5.32 0.09 -12.48 16 16 N -0.61 -9.88 2.97 -173.87 -0.52 -10.40 16 17 C 0.12 1.66 6.22 -3.71 -0.02 1.64 16 18 C -0.13 -1.61 5.49 -26.63 -0.15 -1.75 16 19 C 0.26 3.03 1.02 -26.74 -0.03 3.00 16 20 C -0.15 -1.84 5.45 -26.63 -0.15 -1.99 16 21 C 0.10 1.38 4.54 -3.71 -0.02 1.37 16 22 O -0.37 -4.09 9.71 -59.04 -0.57 -4.66 16 23 C 0.02 0.15 8.07 38.17 0.31 0.45 16 24 C 0.01 0.11 7.94 38.17 0.30 0.41 16 25 O -0.37 -4.21 10.98 -59.04 -0.65 -4.86 16 26 C -0.14 -3.45 9.35 -38.44 -0.36 -3.81 16 27 H 0.29 6.78 8.30 -40.82 -0.34 6.45 16 28 H 0.10 2.36 4.51 -52.49 -0.24 2.12 16 29 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.11 1.76 6.03 -52.49 -0.32 1.44 16 31 H 0.10 1.43 6.99 -51.93 -0.36 1.07 16 32 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 1.81 4.46 -51.93 -0.23 1.58 16 38 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 2.68 7.99 -52.49 -0.42 2.26 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -30.06 339.48 -8.42 -38.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.78 Total: 5.49 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.72 Total: -12.70 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.26 Total: -30.65 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.14 Total: -22.00 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.16 Total: 16.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.06 -8.42 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052361162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.870 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds