Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 119.99684 * 2 1 4 4 C 1.38214 * 119.99662 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00062 * 0.26318 * 5 4 3 7 7 C 1.50693 * 120.00162 * 179.71972 * 6 5 4 8 8 C 1.50697 * 115.55263 * 214.41138 * 7 6 5 9 9 O 1.20826 * 120.00141 * 145.58057 * 8 7 6 10 10 O 1.34226 * 120.00157 * 325.58282 * 8 7 6 11 11 C 1.45199 * 117.00413 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47344 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00133 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00076 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00260 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47360 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99926 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00333 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00027 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47168 * 60.00224 * 20 18 16 22 22 H 1.48494 * 109.47093 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46711 * 300.00294 * 20 18 16 24 24 C 1.53003 * 117.50058 * 68.74231 * 7 6 5 25 25 C 1.53002 * 117.49810 * 0.08302 * 7 6 5 26 26 C 1.38212 * 120.00275 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46442 * 90.00623 * 1 2 3 28 28 H 1.09000 * 109.46849 * 210.00030 * 1 2 3 29 29 H 1.08993 * 109.47102 * 330.00327 * 1 2 3 30 30 H 1.07997 * 119.99889 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.99762 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.99676 * 179.97438 * 5 4 3 33 33 H 1.08992 * 109.47450 * 300.00904 * 11 10 8 34 34 H 1.09002 * 109.46547 * 60.00519 * 11 10 8 35 35 H 0.97002 * 120.00066 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47131 * 299.99948 * 15 14 12 37 37 H 1.08998 * 109.47079 * 59.99740 * 15 14 12 38 38 H 0.96994 * 120.00153 * 179.97438 * 19 18 16 39 39 H 1.09006 * 117.49752 * 0.02562 * 24 7 6 40 40 H 1.08998 * 117.50452 * 145.01781 * 24 7 6 41 41 H 1.08999 * 117.50078 * 214.97730 * 25 7 6 42 42 H 1.08994 * 117.49749 * 359.97438 * 25 7 6 43 43 H 1.08004 * 119.99477 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0119 8 6 3.6874 -3.6222 -0.7849 9 8 4.3727 -4.4237 -1.3745 10 8 2.3498 -3.7296 -0.8184 11 6 1.7960 -4.8328 -1.5829 12 6 0.2915 -4.7916 -1.5066 13 8 -0.2598 -3.9181 -0.8708 14 7 -0.4415 -5.7253 -2.1448 15 6 -1.9040 -5.6850 -2.0710 16 6 -2.4788 -6.8307 -2.8634 17 1 -1.8205 -7.5203 -3.3708 18 6 -3.8451 -6.9993 -2.9397 19 7 -4.6468 -6.1599 -2.3213 20 14 -4.5576 -8.4200 -3.9213 21 1 -4.0686 -9.7045 -3.3592 22 1 -6.0401 -8.3790 -3.8466 23 1 -4.1304 -8.3055 -5.3389 24 6 5.1144 -2.8734 1.2508 25 6 5.8628 -2.4351 -0.0106 26 6 2.1982 -1.1969 -0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 5.3518 0.0002 -0.0014 33 1 2.1091 -4.7472 -2.6234 34 1 2.1553 -5.7762 -1.1718 35 1 -0.0006 -6.4241 -2.6530 36 1 -2.2179 -5.7697 -1.0306 37 1 -2.2627 -4.7417 -2.4830 38 1 -5.6080 -6.2783 -2.3753 39 1 5.0823 -2.1740 2.0863 40 1 5.1601 -3.9281 1.5222 41 1 6.4006 -3.2016 -0.5685 42 1 6.3233 -1.4472 -0.0056 43 1 1.6581 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053726215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = -74.788193 kcal Electronic energy + Delta-G solvation = -25893.017439 eV Core-core repulsion = 22097.021565 eV Total energy + Delta-G solvation = -3795.995874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11055 -39.50946 -38.74519 -37.32195 -36.10626 -34.27050 -32.50368 -32.42858 -30.96118 -29.33706 -27.04900 -26.72188 -25.11524 -23.07413 -22.76464 -22.37337 -21.33324 -19.97849 -19.70162 -17.90377 -17.57792 -16.78807 -16.53786 -16.44057 -15.55541 -15.32322 -15.08143 -14.92039 -14.54193 -14.48581 -14.19452 -13.66380 -13.37898 -13.21895 -13.02906 -12.83650 -12.54812 -12.25222 -12.01836 -11.94573 -11.88045 -11.78582 -11.50848 -11.08970 -11.04925 -10.92833 -10.80750 -10.75203 -10.71573 -10.64048 -10.36064 -9.47720 -9.20466 -8.79776 -8.74286 -8.59712 -8.01268 -6.21461 -4.29007 1.19100 1.39511 1.96266 2.30015 3.14615 3.22874 3.27928 3.29211 3.36255 3.76583 3.91686 4.14559 4.30538 4.35954 4.51367 4.63685 4.85565 4.89589 5.07028 5.14605 5.15501 5.20815 5.21117 5.29670 5.31532 5.42536 5.52032 5.58130 5.69969 5.74165 5.84131 5.87832 6.15878 6.24516 6.30855 6.39499 6.57471 6.71496 7.02325 7.19740 7.28004 7.43443 7.55773 7.63660 7.89964 8.47238 8.68403 8.93243 9.37447 10.88583 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002897 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.588447 B = 9663.195118 C =11014.712070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.056 4.056 7 C -0.099 4.099 8 C 0.503 3.497 9 O -0.507 6.507 10 O -0.318 6.318 11 C 0.043 3.957 12 C 0.501 3.499 13 O -0.533 6.533 14 N -0.706 5.706 15 C 0.253 3.747 16 C -0.546 4.546 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.100 4.100 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.678 11.175 5.694 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.056 4.056 7 C -0.100 4.100 8 C 0.346 3.654 9 O -0.395 6.395 10 O -0.233 6.233 11 C -0.035 4.035 12 C 0.283 3.717 13 O -0.410 6.410 14 N -0.356 5.356 15 C 0.132 3.868 16 C -0.585 4.585 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.172 4.172 25 C -0.175 4.175 26 C -0.118 4.118 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 19.197 11.586 6.000 23.211 hybrid contribution -0.278 -1.241 -0.987 1.610 sum 18.919 10.345 5.014 22.138 Atomic orbital electron populations 1.20819 0.90590 1.02981 1.02904 1.20032 0.96630 0.92703 0.98291 1.21106 0.94247 0.97629 1.01023 1.21000 0.94275 0.97529 1.01096 1.20898 0.99588 0.91705 1.01972 1.18692 0.93388 0.91129 1.02409 1.19632 0.94142 0.92217 1.03993 1.22300 0.80930 0.84058 0.78150 1.90658 1.64251 1.42171 1.42401 1.86585 1.22018 1.48406 1.66306 1.22948 0.93628 0.89495 0.97391 1.19841 0.87307 0.83339 0.81168 1.90693 1.72744 1.35894 1.41701 1.46362 1.10176 1.28547 1.50528 1.19161 0.71926 0.97785 0.97884 1.21171 0.92110 1.12194 1.32994 0.91845 1.24943 0.96778 0.96664 0.95528 1.69959 1.04066 1.36273 1.41889 0.86456 0.77981 0.82059 0.80322 1.20027 1.21024 1.20028 1.23231 0.99480 1.03484 0.91019 1.23282 0.89552 1.04429 1.00273 1.21622 0.93122 0.99676 0.97361 0.90892 0.90516 0.91952 0.86203 0.86134 0.86072 0.88502 0.88483 0.77449 0.95262 0.95255 0.92304 0.86875 0.87503 0.86742 0.86868 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 10.01 36.01 0.36 -1.14 16 2 C -0.08 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.12 -1.27 9.39 -39.58 -0.37 -1.64 16 6 C -0.06 -0.69 5.44 -104.63 -0.57 -1.26 16 7 C -0.10 -1.14 2.50 -156.81 -0.39 -1.53 16 8 C 0.50 7.19 7.46 36.00 0.27 7.46 16 9 O -0.51 -7.84 16.01 -18.75 -0.30 -8.14 16 10 O -0.32 -5.02 6.44 -45.89 -0.30 -5.32 16 11 C 0.04 0.64 5.94 36.00 0.21 0.86 16 12 C 0.50 9.73 7.91 -10.99 -0.09 9.64 16 13 O -0.53 -12.31 16.50 -14.11 -0.23 -12.54 16 14 N -0.71 -14.30 5.55 -61.47 -0.34 -14.64 16 15 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 16 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 20 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.14 -1.17 9.94 -26.69 -0.27 -1.43 16 25 C -0.14 -1.18 9.38 -26.69 -0.25 -1.43 16 26 C -0.10 -1.44 8.73 -39.58 -0.35 -1.79 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.10 8.09 -51.93 -0.42 0.69 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.93 5.93 -52.49 -0.31 0.62 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.39 6.72 8.32 -40.82 -0.34 6.39 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.11 1.01 7.67 -51.93 -0.40 0.61 16 42 H 0.11 0.72 6.08 -51.93 -0.32 0.40 16 43 H 0.16 2.55 5.31 -52.48 -0.28 2.28 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -32.43 369.62 -8.98 -41.41 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.82 Total: 6.91 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.28 Total: -3.91 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.40 Total: -39.50 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.83 Total: -26.00 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -8.98 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053726215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.378 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds