Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 119.99684 * 2 1 4 4 C 1.38214 * 119.99662 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00062 * 0.26318 * 5 4 3 7 7 C 1.50693 * 120.00162 * 179.71972 * 6 5 4 8 8 C 1.50697 * 115.55263 * 214.41138 * 7 6 5 9 9 O 1.20826 * 120.00141 * 145.58057 * 8 7 6 10 10 O 1.34226 * 120.00157 * 325.58282 * 8 7 6 11 11 C 1.45199 * 117.00413 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47344 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00133 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00076 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00260 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47360 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99926 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00333 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00027 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47168 * 60.00224 * 20 18 16 22 22 H 1.48494 * 109.47093 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46711 * 300.00294 * 20 18 16 24 24 C 1.53003 * 117.50058 * 68.74231 * 7 6 5 25 25 C 1.53002 * 117.49810 * 0.08302 * 7 6 5 26 26 C 1.38212 * 120.00275 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46442 * 90.00623 * 1 2 3 28 28 H 1.09000 * 109.46849 * 210.00030 * 1 2 3 29 29 H 1.08993 * 109.47102 * 330.00327 * 1 2 3 30 30 H 1.07997 * 119.99889 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.99762 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.99676 * 179.97438 * 5 4 3 33 33 H 1.08992 * 109.47450 * 300.00904 * 11 10 8 34 34 H 1.09002 * 109.46547 * 60.00519 * 11 10 8 35 35 H 0.97002 * 120.00066 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47131 * 299.99948 * 15 14 12 37 37 H 1.08998 * 109.47079 * 59.99740 * 15 14 12 38 38 H 0.96994 * 120.00153 * 179.97438 * 19 18 16 39 39 H 1.09006 * 117.49752 * 0.02562 * 24 7 6 40 40 H 1.08998 * 117.50452 * 145.01781 * 24 7 6 41 41 H 1.08999 * 117.50078 * 214.97730 * 25 7 6 42 42 H 1.08994 * 117.49749 * 359.97438 * 25 7 6 43 43 H 1.08004 * 119.99477 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0119 8 6 3.6874 -3.6222 -0.7849 9 8 4.3727 -4.4237 -1.3745 10 8 2.3498 -3.7296 -0.8184 11 6 1.7960 -4.8328 -1.5829 12 6 0.2915 -4.7916 -1.5066 13 8 -0.2598 -3.9181 -0.8708 14 7 -0.4415 -5.7253 -2.1448 15 6 -1.9040 -5.6850 -2.0710 16 6 -2.4788 -6.8307 -2.8634 17 1 -1.8205 -7.5203 -3.3708 18 6 -3.8451 -6.9993 -2.9397 19 7 -4.6468 -6.1599 -2.3213 20 14 -4.5576 -8.4200 -3.9213 21 1 -4.0686 -9.7045 -3.3592 22 1 -6.0401 -8.3790 -3.8466 23 1 -4.1304 -8.3055 -5.3389 24 6 5.1144 -2.8734 1.2508 25 6 5.8628 -2.4351 -0.0106 26 6 2.1982 -1.1969 -0.0005 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1327 -0.0010 32 1 5.3518 0.0002 -0.0014 33 1 2.1091 -4.7472 -2.6234 34 1 2.1553 -5.7762 -1.1718 35 1 -0.0006 -6.4241 -2.6530 36 1 -2.2179 -5.7697 -1.0306 37 1 -2.2627 -4.7417 -2.4830 38 1 -5.6080 -6.2783 -2.3753 39 1 5.0823 -2.1740 2.0863 40 1 5.1601 -3.9281 1.5222 41 1 6.4006 -3.2016 -0.5685 42 1 6.3233 -1.4472 -0.0056 43 1 1.6581 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053726215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = -93.332193 kcal Electronic energy + Delta-G solvation = -25893.821567 eV Core-core repulsion = 22097.021565 eV Total energy + Delta-G solvation = -3796.800002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.16828 -40.68192 -40.13671 -38.33193 -37.17720 -36.19187 -34.43112 -33.39766 -31.84298 -30.86179 -28.72399 -27.79120 -26.19787 -24.58208 -23.76281 -23.39355 -22.28801 -21.67186 -20.72451 -19.22022 -18.90722 -18.00250 -17.89675 -17.50462 -17.12157 -16.96344 -16.27658 -16.19598 -15.87261 -15.66386 -15.20031 -14.73723 -14.67963 -14.51306 -14.25839 -14.10028 -13.97738 -13.68597 -13.51849 -13.17519 -13.02418 -12.96321 -12.69994 -12.54237 -12.33280 -12.25631 -11.99634 -11.91830 -11.67522 -11.62187 -11.54888 -11.53224 -10.90705 -10.82084 -9.94287 -9.64261 -9.46039 -8.31007 -6.47811 0.33290 0.50186 0.90619 1.16729 1.43012 1.46268 1.53349 1.54724 2.31112 2.51178 2.59113 2.93716 3.04066 3.33856 3.47642 3.60778 3.70513 3.87279 3.98227 4.00242 4.02264 4.13076 4.31342 4.43223 4.51525 4.65750 4.71239 4.74076 4.83499 4.88750 4.98427 5.04692 5.11404 5.14144 5.20380 5.25121 5.29570 5.40047 5.56685 5.60781 5.66437 5.79098 5.80539 6.13760 6.48636 6.60817 6.76054 7.18470 7.33464 8.80848 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.002897 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.588447 B = 9663.195118 C =11014.712070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.060 4.060 7 C -0.128 4.128 8 C 0.500 3.500 9 O -0.522 6.522 10 O -0.335 6.335 11 C 0.053 3.947 12 C 0.500 3.500 13 O -0.575 6.575 14 N -0.699 5.699 15 C 0.269 3.731 16 C -0.559 4.559 17 H 0.085 0.915 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.132 4.132 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.411 0.589 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.825 11.404 5.144 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.137 4.137 6 C -0.060 4.060 7 C -0.129 4.129 8 C 0.344 3.656 9 O -0.412 6.412 10 O -0.250 6.250 11 C -0.024 4.024 12 C 0.285 3.715 13 O -0.455 6.455 14 N -0.351 5.351 15 C 0.147 3.853 16 C -0.597 4.597 17 H 0.103 0.897 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.150 4.150 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.247 0.753 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.160 0.840 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 22.396 11.795 5.439 25.890 hybrid contribution -1.203 -1.240 -0.760 1.888 sum 21.193 10.555 4.679 24.134 Atomic orbital electron populations 1.20753 0.91461 1.02673 1.02026 1.20120 0.96386 0.93611 0.99850 1.21363 0.95259 0.97311 1.00438 1.21444 0.93775 0.98955 0.99056 1.21272 1.01231 0.90731 1.00417 1.18810 0.92490 0.92483 1.02229 1.19787 0.95743 0.91071 1.06300 1.22926 0.80047 0.84607 0.77991 1.90635 1.64193 1.43083 1.43257 1.86650 1.23416 1.48480 1.66489 1.22806 0.89761 0.90808 0.99021 1.20587 0.89360 0.81937 0.79581 1.90684 1.74149 1.37436 1.43268 1.46036 1.08216 1.29622 1.51198 1.18596 0.75083 0.96235 0.95376 1.21579 0.92830 1.12369 1.32886 0.89706 1.26040 0.97282 0.99589 0.96510 1.70122 1.04475 1.38564 1.43615 0.85219 0.76809 0.78350 0.78929 1.18668 1.21073 1.18707 1.23398 0.97562 1.04126 0.90981 1.23461 0.86854 1.05849 0.99110 1.21507 0.94512 0.98805 1.00179 0.92117 0.93388 0.89599 0.84178 0.82618 0.82699 0.86287 0.85870 0.75253 0.98985 0.99025 0.92175 0.85099 0.87432 0.86984 0.83991 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.18 10.01 71.24 0.71 -2.47 16 2 C -0.10 -2.75 5.88 -19.86 -0.12 -2.86 16 3 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 4 C -0.11 -1.90 10.05 22.27 0.22 -1.67 16 5 C -0.12 -2.05 9.39 22.27 0.21 -1.84 16 6 C -0.06 -1.42 5.44 -19.87 -0.11 -1.53 16 7 C -0.13 -2.78 2.50 -53.68 -0.13 -2.91 16 8 C 0.50 14.17 7.46 71.24 0.53 14.70 16 9 O -0.52 -15.66 16.01 21.96 0.35 -15.30 16 10 O -0.33 -10.95 6.44 -45.03 -0.29 -11.24 16 11 C 0.05 1.60 5.94 71.24 0.42 2.03 16 12 C 0.50 20.35 7.91 87.66 0.69 21.05 16 13 O -0.58 -28.74 16.50 15.74 0.26 -28.48 16 14 N -0.70 -29.26 5.55 -466.79 -2.59 -31.85 16 15 C 0.27 14.62 5.43 85.63 0.46 15.09 16 16 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 17 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 20 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C -0.12 -1.84 9.94 30.62 0.30 -1.54 16 25 C -0.12 -1.59 9.38 30.62 0.29 -1.30 16 26 C -0.13 -3.99 8.73 22.27 0.19 -3.80 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.55 5.93 -2.91 -0.02 1.54 16 33 H 0.12 3.11 8.13 -2.39 -0.02 3.09 16 34 H 0.12 3.12 8.13 -2.39 -0.02 3.10 16 35 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 1.64 7.67 -2.39 -0.02 1.62 16 42 H 0.14 1.08 6.08 -2.39 -0.01 1.06 16 43 H 0.12 4.45 5.31 -2.91 -0.02 4.43 16 Total: -1.00 -75.49 369.62 4.91 -70.58 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.27 Total: 26.15 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.60 Total: 1.47 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.30 Total: -87.23 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: 0.32 Total: -55.03 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.49 4.91 -70.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053726215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.752 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds