Wall clock time and date at job start Tue Mar 31 2020 12:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38146 * 120.02775 * 2 1 4 4 C 1.38275 * 120.05454 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.94202 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47416 * 89.99992 * 5 4 3 7 7 C 1.46496 * 119.99880 * 269.99947 * 6 5 4 8 8 C 1.36938 * 120.00220 * 90.00023 * 6 5 4 9 9 H 1.08003 * 119.99983 * 22.36975 * 8 6 5 10 10 C 1.38810 * 119.99934 * 202.37616 * 8 6 5 11 11 N 1.31619 * 120.00318 * 11.33480 * 10 8 6 12 12 Si 1.86799 * 119.99924 * 191.33248 * 10 8 6 13 13 H 1.48504 * 109.47280 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47211 * 120.00059 * 12 10 8 15 15 H 1.48495 * 109.47360 * 240.00085 * 12 10 8 16 16 C 1.38269 * 120.11315 * 0.29520 * 4 3 2 17 17 C 1.38142 * 120.05053 * 359.45066 * 16 4 3 18 18 C 1.50702 * 120.02757 * 180.25032 * 17 16 4 19 19 C 1.38732 * 119.94902 * 0.53005 * 17 16 4 20 20 O 1.35900 * 120.06026 * 179.72859 * 19 17 16 21 21 C 1.42907 * 116.99597 * 270.01757 * 20 19 17 22 22 C 1.52998 * 109.46729 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46995 * 60.00586 * 22 21 20 24 24 F 1.39904 * 109.46827 * 180.02562 * 22 21 20 25 25 F 1.39895 * 109.47451 * 299.99915 * 22 21 20 26 26 H 1.09000 * 109.47257 * 90.00104 * 1 2 3 27 27 H 1.08999 * 109.47422 * 209.99905 * 1 2 3 28 28 H 1.09006 * 109.47451 * 330.00065 * 1 2 3 29 29 H 1.07997 * 119.97739 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47583 * 329.99661 * 5 4 3 31 31 H 1.09002 * 109.47178 * 209.99918 * 5 4 3 32 32 H 1.08997 * 109.47282 * 94.20299 * 7 6 5 33 33 H 1.09004 * 109.47510 * 214.20366 * 7 6 5 34 34 H 1.09002 * 109.47289 * 334.19827 * 7 6 5 35 35 H 0.96999 * 120.00375 * 180.02562 * 11 10 8 36 36 H 1.07999 * 119.97003 * 179.70760 * 16 4 3 37 37 H 1.09005 * 109.47064 * 270.28014 * 18 17 16 38 38 H 1.09004 * 109.46552 * 30.27573 * 18 17 16 39 39 H 1.08993 * 109.47538 * 150.27760 * 18 17 16 40 40 H 1.08990 * 109.46884 * 300.00117 * 21 20 19 41 41 H 1.09002 * 109.46615 * 60.00065 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.3325 2.5029 0.0001 6 7 4.5766 2.9253 1.3814 7 6 3.5990 3.7692 2.0729 8 6 5.7186 2.5313 2.0263 9 1 6.5863 2.2352 1.4555 10 6 5.7609 2.5123 3.4136 11 7 4.6517 2.6539 4.1079 12 14 7.3920 2.2857 4.2953 13 1 8.4810 2.1504 3.2947 14 1 7.6567 3.4654 5.1576 15 1 7.3354 1.0620 5.1345 16 6 4.2752 0.0010 -0.0072 17 6 3.5885 -1.1977 -0.0019 18 6 4.3458 -2.5006 -0.0036 19 6 2.2012 -1.2011 -0.0010 20 8 1.5234 -2.3790 -0.0014 21 6 1.1993 -2.9406 -1.2749 22 6 0.4435 -4.2556 -1.0749 23 9 -0.7339 -4.0126 -0.3592 24 9 0.1267 -4.8057 -2.3216 25 9 1.2467 -5.1514 -0.3611 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6583 2.1314 0.0004 30 1 3.7422 3.2620 -0.5131 31 1 5.2849 2.3743 -0.5142 32 1 2.9183 3.1408 2.6472 33 1 4.1190 4.4510 2.7459 34 1 3.0323 4.3438 1.3403 35 1 4.6813 2.6410 5.0773 36 1 5.3552 0.0042 -0.0124 37 1 4.5277 -2.8139 -1.0317 38 1 5.2982 -2.3679 0.5097 39 1 3.7594 -3.2624 0.5100 40 1 0.5739 -2.2425 -1.8312 41 1 2.1167 -3.1302 -1.8323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054396291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:20 Heat of formation + Delta-G solvation = -166.225531 kcal Electronic energy + Delta-G solvation = -27142.123064 eV Core-core repulsion = 22800.305429 eV Total energy + Delta-G solvation = -4341.817635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.15766 -48.70297 -48.63762 -41.29129 -38.88737 -37.13046 -34.49372 -33.85332 -32.12574 -30.90933 -28.47400 -28.01300 -27.41538 -26.83307 -24.42334 -23.45824 -21.88625 -21.36129 -19.77186 -19.66905 -18.89100 -18.74613 -18.41916 -17.46204 -16.88386 -15.91112 -15.70052 -15.69237 -15.53159 -15.42164 -15.18281 -15.08146 -14.88792 -14.82967 -14.79389 -14.77246 -14.25245 -14.10076 -14.06096 -13.84087 -13.45329 -13.19506 -12.92899 -12.83778 -12.79212 -12.58835 -12.48129 -12.22661 -12.14744 -11.99815 -11.82620 -11.74425 -11.05374 -10.65155 -9.43361 -9.32829 -8.79372 -7.82689 -5.29281 0.21585 0.48342 1.42703 1.45421 1.46923 1.56355 2.21568 2.50306 2.69818 2.88073 2.94162 3.34133 3.42450 3.86240 3.88450 3.90415 4.01576 4.05575 4.08797 4.46153 4.47041 4.57899 4.59551 4.68700 4.76728 4.77496 4.86042 4.87857 5.00595 5.03950 5.18091 5.33612 5.38377 5.53911 5.57823 5.64138 5.74433 5.81208 5.86955 6.32542 6.43195 7.15335 7.86332 8.29673 9.20793 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.003380 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.450809 B = 8282.027574 C = 8843.163527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.118 4.118 4 C -0.084 4.084 5 C 0.178 3.822 6 N -0.606 5.606 7 C 0.178 3.822 8 C -0.255 4.255 9 H 0.075 0.925 10 C -0.051 4.051 11 N -0.937 5.937 12 Si 0.963 3.037 13 H -0.263 1.263 14 H -0.292 1.292 15 H -0.297 1.297 16 C -0.113 4.113 17 C -0.100 4.100 18 C -0.108 4.108 19 C 0.060 3.940 20 O -0.325 6.325 21 C 0.015 3.985 22 C 0.467 3.533 23 F -0.183 7.183 24 F -0.171 7.171 25 F -0.184 7.184 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.060 0.940 32 H -0.001 1.001 33 H 0.019 0.981 34 H 0.033 0.967 35 H 0.246 0.754 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 -10.756 -15.125 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.087 4.087 5 C 0.053 3.947 6 N -0.328 5.328 7 C 0.034 3.966 8 C -0.385 4.385 9 H 0.092 0.908 10 C -0.246 4.246 11 N -0.584 5.584 12 Si 0.791 3.209 13 H -0.187 1.187 14 H -0.219 1.219 15 H -0.224 1.224 16 C -0.132 4.132 17 C -0.101 4.101 18 C -0.165 4.165 19 C 0.017 3.983 20 O -0.242 6.242 21 C -0.061 4.061 22 C 0.413 3.587 23 F -0.165 7.165 24 F -0.152 7.152 25 F -0.166 7.166 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.017 0.983 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.482 -10.836 -14.801 20.209 hybrid contribution 0.697 -0.231 1.115 1.335 sum -7.785 -11.066 -13.686 19.245 Atomic orbital electron populations 1.20719 0.89083 1.03199 1.03363 1.20358 0.97759 0.91950 0.99879 1.20894 0.93479 0.97492 1.01834 1.21159 0.94608 0.97537 0.95372 1.20109 0.97683 0.90984 0.85969 1.44283 1.21324 1.55734 1.11424 1.20549 0.90936 0.91915 0.93243 1.19576 0.90545 1.38998 0.89363 0.90773 1.25757 0.99608 1.01488 0.97756 1.70247 1.26679 1.56236 1.05228 0.85262 0.80382 0.76607 0.78609 1.18675 1.21869 1.22420 1.20861 0.99774 0.91336 1.01269 1.20356 0.93080 0.96675 0.99981 1.20719 0.99504 0.92955 1.03287 1.18064 0.89128 0.83757 1.07360 1.85961 1.75320 1.36217 1.26723 1.23923 1.02562 0.91607 0.88025 1.20192 0.77938 0.86764 0.73803 1.93206 1.50053 1.94351 1.78889 1.93219 1.93197 1.87023 1.41798 1.93204 1.73303 1.71074 1.79003 0.89163 0.91472 0.91040 0.85430 0.91080 0.92134 0.98305 0.96232 0.94865 0.94509 0.86351 0.89168 0.91523 0.91352 0.86399 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.79 71.23 0.70 -1.81 16 2 C -0.10 -2.99 5.89 -19.77 -0.12 -3.11 16 3 C -0.12 -3.96 9.35 22.26 0.21 -3.75 16 4 C -0.08 -3.09 5.46 -19.85 -0.11 -3.19 16 5 C 0.18 6.86 5.83 85.63 0.50 7.36 16 6 N -0.61 -29.56 2.91 -731.32 -2.13 -31.69 16 7 C 0.18 8.72 9.01 127.77 1.15 9.87 16 8 C -0.25 -13.65 9.67 84.03 0.81 -12.83 16 9 H 0.07 3.83 7.84 -2.91 -0.02 3.80 16 10 C -0.05 -2.85 5.13 84.86 0.44 -2.41 16 11 N -0.94 -55.80 10.59 21.65 0.23 -55.57 16 12 Si 0.96 45.03 29.57 68.60 2.03 47.05 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 14 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 15 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 16 C -0.11 -4.05 9.35 22.25 0.21 -3.84 16 17 C -0.10 -3.18 5.89 -19.77 -0.12 -3.30 16 18 C -0.11 -2.76 9.79 71.24 0.70 -2.06 16 19 C 0.06 1.83 5.67 22.51 0.13 1.95 16 20 O -0.32 -8.64 8.04 -92.42 -0.74 -9.38 16 21 C 0.01 0.27 6.02 71.98 0.43 0.70 16 22 C 0.47 8.97 3.32 71.98 0.24 9.21 16 23 F -0.18 -4.05 17.26 44.97 0.78 -3.28 16 24 F -0.17 -2.95 17.32 44.97 0.78 -2.17 16 25 F -0.18 -4.13 17.26 44.97 0.78 -3.36 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.61 7.53 -2.39 -0.02 1.60 16 28 H 0.07 1.63 8.09 -2.38 -0.02 1.61 16 29 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 30 H 0.07 2.38 7.81 -2.39 -0.02 2.36 16 31 H 0.06 2.23 7.97 -2.39 -0.02 2.21 16 32 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 33 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 34 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 35 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 1.73 8.09 -2.38 -0.02 1.71 16 39 H 0.07 1.75 7.53 -2.39 -0.02 1.74 16 40 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.14 358.74 7.92 -57.22 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.04 Total: 8.38 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.17 Total: -7.21 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.90 Total: -87.26 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.74 Total: -9.38 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 2.33 Total: -8.81 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.14 7.92 -57.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054396291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.009 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds