Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48507 * 109.47483 * 240.00416 * 3 2 1 5 5 H 1.48500 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47112 * 120.00536 * 3 2 1 7 7 C 1.38660 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00285 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00146 * 185.05716 * 9 7 2 11 11 C 1.38901 * 120.06971 * 354.49392 * 10 9 7 12 12 C 1.38072 * 119.93554 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06746 * 359.97438 * 12 11 10 14 14 C 1.38283 * 120.13661 * 359.76625 * 13 12 11 15 15 C 1.50697 * 119.96720 * 180.25469 * 14 13 12 16 16 N 1.46505 * 109.47270 * 270.25787 * 15 14 13 17 17 C 1.34772 * 120.00184 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00235 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.66350 * 61.76523 * 19 17 16 21 21 C 1.55004 * 110.75083 * 298.55024 * 19 17 16 22 22 C 1.55822 * 102.78588 * 241.67396 * 21 19 17 23 23 H 1.08998 * 115.38508 * 158.11185 * 22 21 19 24 24 C 1.55823 * 105.32534 * 287.30757 * 22 21 19 25 25 C 1.55004 * 102.78633 * 72.69276 * 24 22 21 26 26 C 1.55819 * 102.78713 * 359.97438 * 25 24 22 27 27 H 1.09003 * 115.93025 * 158.43698 * 26 25 24 28 28 O 1.46532 * 101.24787 * 32.41543 * 22 21 19 29 29 C 1.38120 * 120.06960 * 0.51563 * 14 13 12 30 30 H 0.96993 * 119.99908 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.03542 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.96950 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.93408 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47089 * 30.25785 * 15 14 13 35 35 H 1.08994 * 109.47471 * 150.25845 * 15 14 13 36 36 H 0.96998 * 119.99768 * 359.97438 * 16 15 14 37 37 H 1.08999 * 110.74344 * 359.97438 * 21 19 17 38 38 H 1.08995 * 110.74934 * 123.16575 * 21 19 17 39 39 H 1.08999 * 110.74808 * 191.01875 * 24 22 21 40 40 H 1.08998 * 110.75150 * 314.36695 * 24 22 21 41 41 H 1.09005 * 110.74745 * 241.67164 * 25 24 22 42 42 H 1.09002 * 110.90345 * 118.39441 * 25 24 22 43 43 H 1.07999 * 120.03771 * 179.73862 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1055 11 6 3.4574 -3.4395 0.0927 12 6 4.2025 -4.5968 0.2013 13 6 3.5687 -5.8203 0.3234 14 6 2.1877 -5.8880 0.3419 15 6 1.5012 -7.2223 0.4808 16 7 1.2725 -7.7946 -0.8483 17 6 0.6683 -8.9930 -0.9712 18 8 0.3134 -9.5975 0.0186 19 6 0.4326 -9.5814 -2.3383 20 1 1.3787 -9.7522 -2.8519 21 6 -0.4910 -8.6637 -3.1794 22 6 -1.7257 -9.5742 -3.4525 23 1 -2.6484 -9.0487 -3.6989 24 6 -1.2401 -10.6245 -4.4961 25 6 -0.3166 -11.5422 -3.6550 26 6 -0.3906 -10.8999 -2.2373 27 1 -0.1281 -11.5520 -1.4043 28 8 -1.7615 -10.3814 -2.2301 29 6 1.4367 -4.7344 0.2278 30 1 -0.4850 0.8400 0.0004 31 1 3.9529 -2.4845 -0.0022 32 1 5.2813 -4.5469 0.1909 33 1 4.1537 -6.7242 0.4077 34 1 2.1303 -7.8956 1.0630 35 1 0.5457 -7.0883 0.9879 36 1 1.5560 -7.3110 -1.6399 37 1 -0.7810 -7.7811 -2.6094 38 1 -0.0051 -8.3772 -4.1120 39 1 -2.0825 -11.1878 -4.8976 40 1 -0.6797 -10.1424 -5.2972 41 1 0.7040 -11.5174 -4.0370 42 1 -0.6958 -12.5639 -3.6368 43 1 0.3581 -4.7883 0.2381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070864901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = -74.509712 kcal Electronic energy + Delta-G solvation = -25697.889014 eV Core-core repulsion = 21901.905216 eV Total energy + Delta-G solvation = -3795.983798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30022 -39.39556 -38.76885 -36.80633 -34.52346 -32.67049 -32.35470 -31.53458 -30.39183 -29.91105 -29.12407 -26.09757 -25.18386 -23.29413 -21.89503 -21.72170 -20.87331 -20.79412 -19.90642 -18.04758 -17.46725 -17.03219 -16.70050 -16.08957 -15.50409 -15.34380 -15.08540 -14.89073 -14.43832 -14.27699 -14.22753 -13.67374 -13.56631 -13.31638 -12.85365 -12.75405 -12.45804 -12.31654 -12.04590 -11.90624 -11.75472 -11.65991 -11.40418 -11.38086 -11.26082 -10.94948 -10.86512 -10.78015 -10.73283 -10.51584 -10.16997 -9.74445 -9.44021 -8.98714 -8.91076 -8.26889 -7.35858 -6.51340 -4.11123 1.87474 2.23872 2.65421 3.08260 3.09672 3.12929 3.27480 3.63809 3.90546 4.17912 4.27079 4.42209 4.47942 4.56910 4.78053 4.80799 4.87821 4.91634 4.98794 5.04597 5.14806 5.22082 5.27933 5.51178 5.52299 5.53057 5.68437 5.72059 5.72144 5.80156 5.81871 5.83221 5.92239 6.04901 6.22488 6.33384 6.47753 6.52748 6.78841 6.96448 7.15989 7.24117 7.32740 7.55879 7.68741 7.92548 8.25708 8.93774 9.62121 10.66303 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002560 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.485301 B =10936.405337 C =11764.195259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.151 3.849 11 C -0.226 4.226 12 C -0.076 4.076 13 C -0.196 4.196 14 C -0.072 4.072 15 C 0.167 3.833 16 N -0.720 5.720 17 C 0.522 3.478 18 O -0.539 6.539 19 C -0.141 4.141 20 H 0.109 0.891 21 C -0.142 4.142 22 C 0.060 3.940 23 H 0.132 0.868 24 C -0.148 4.148 25 C -0.149 4.149 26 C 0.089 3.911 27 H 0.137 0.863 28 O -0.365 6.365 29 C -0.172 4.172 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -17.759 -8.948 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.073 4.073 15 C 0.045 3.955 16 N -0.371 5.371 17 C 0.308 3.692 18 O -0.416 6.416 19 C -0.163 4.163 20 H 0.127 0.873 21 C -0.180 4.180 22 C 0.002 3.998 23 H 0.150 0.850 24 C -0.186 4.186 25 C -0.187 4.187 26 C 0.030 3.970 27 H 0.155 0.845 28 O -0.283 6.283 29 C -0.191 4.191 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.798 -17.999 -8.065 19.806 hybrid contribution 0.966 1.301 -0.514 1.700 sum 2.764 -16.698 -8.580 18.976 Atomic orbital electron populations 1.70023 1.05982 1.27920 1.45598 1.25297 0.95846 0.98864 0.96417 0.85779 0.78721 0.79716 0.79211 1.19477 1.20221 1.19457 1.21278 0.91768 0.80766 1.53239 0.89085 1.83982 1.34265 1.11401 1.78238 1.19321 0.90259 0.88062 0.92678 1.21242 0.93841 0.99100 1.10360 1.20743 0.98562 0.92253 0.97859 1.20473 0.93330 0.97109 1.10627 1.19270 0.93487 0.92854 1.01688 1.20154 1.00080 0.91298 0.83991 1.46126 1.60851 1.20362 1.09805 1.20312 0.77036 0.81080 0.90815 1.90697 1.50544 1.60844 1.39501 1.23079 1.01138 0.97618 0.94448 0.87299 1.23315 0.95738 0.98628 1.00311 1.24715 0.98230 0.91717 0.85159 0.85047 1.23255 0.99779 0.97497 0.98057 1.23264 1.00414 0.99932 0.95090 1.24503 0.81616 0.93195 0.97647 0.84516 1.90165 1.29659 1.65377 1.43112 1.20084 0.99428 0.89868 1.09765 0.91862 0.85461 0.87286 0.87540 0.90982 0.90878 0.76319 0.89883 0.89469 0.90743 0.90410 0.90456 0.90459 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.18 -4.86 9.76 0.05 0.00 -4.86 16 10 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 11 C -0.23 -4.66 9.17 -39.40 -0.36 -5.02 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 13 C -0.20 -3.15 9.70 -39.53 -0.38 -3.54 16 14 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 15 C 0.17 2.47 5.80 -5.19 -0.03 2.44 16 16 N -0.72 -9.31 5.46 -61.47 -0.34 -9.65 16 17 C 0.52 7.04 7.01 -10.99 -0.08 6.97 16 18 O -0.54 -9.33 15.88 5.55 0.09 -9.24 16 19 C -0.14 -1.39 2.89 -89.24 -0.26 -1.65 16 20 H 0.11 0.80 7.81 -51.93 -0.41 0.40 16 21 C -0.14 -1.27 6.11 -24.17 -0.15 -1.42 16 22 C 0.06 0.55 5.71 -23.72 -0.14 0.41 16 23 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.15 -1.04 6.52 -24.17 -0.16 -1.20 16 25 C -0.15 -1.09 6.52 -24.17 -0.16 -1.25 16 26 C 0.09 0.92 4.64 -23.75 -0.11 0.81 16 27 H 0.14 1.49 7.71 -51.93 -0.40 1.09 16 28 O -0.36 -4.69 11.65 -35.23 -0.41 -5.10 16 29 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.13 2.63 5.64 -52.48 -0.30 2.34 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.40 4.57 8.46 -40.82 -0.35 4.23 16 37 H 0.08 0.88 7.73 -51.93 -0.40 0.47 16 38 H 0.09 0.58 7.81 -51.93 -0.41 0.18 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.43 7.81 -51.93 -0.41 0.03 16 41 H 0.08 0.45 7.81 -51.93 -0.41 0.04 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -32.66 356.99 -8.60 -41.26 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.85 Total: 8.19 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.21 Total: -16.95 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.42 Total: -33.69 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.32 Total: -19.20 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.66 -8.60 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070864901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.245 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds