Wall clock time and date at job start Tue Mar 31 2020 11:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99725 * 2 1 4 4 C 1.52999 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46849 * 65.00429 * 4 3 2 6 6 C 1.46501 * 119.99573 * 264.80741 * 5 4 3 7 7 C 1.50700 * 109.47203 * 263.18266 * 6 5 4 8 8 H 1.08006 * 120.00191 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00369 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00388 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99732 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47372 * 90.00005 * 11 9 7 13 13 H 1.48507 * 109.47367 * 209.99966 * 11 9 7 14 14 H 1.48501 * 109.47297 * 329.99832 * 11 9 7 15 15 C 1.34769 * 120.00273 * 84.80784 * 5 4 3 16 16 O 1.21654 * 119.99970 * 3.76276 * 15 5 4 17 17 C 1.46986 * 120.00004 * 183.76561 * 15 5 4 18 18 C 1.35802 * 125.13035 * 173.43518 * 17 15 5 19 19 C 1.46246 * 106.08007 * 179.97438 * 18 17 15 20 20 C 1.39702 * 134.19436 * 179.97438 * 19 18 17 21 21 C 1.36619 * 119.71483 * 180.02562 * 20 19 18 22 22 C 1.50693 * 119.78062 * 180.02562 * 21 20 19 23 23 C 1.38842 * 120.44166 * 0.02562 * 21 20 19 24 24 C 1.37798 * 120.74208 * 359.92297 * 23 21 20 25 25 C 1.39022 * 119.85733 * 0.11032 * 24 23 21 26 26 O 1.34719 * 133.24483 * 180.22825 * 25 24 23 27 27 H 1.09003 * 109.46912 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47402 * 300.00034 * 1 2 3 29 29 H 1.09000 * 109.47283 * 60.00091 * 1 2 3 30 30 H 1.08998 * 109.47307 * 60.00088 * 3 2 1 31 31 H 1.08997 * 109.47333 * 299.99853 * 3 2 1 32 32 H 1.09003 * 109.47594 * 305.00381 * 4 3 2 33 33 H 1.08998 * 109.47507 * 184.99775 * 4 3 2 34 34 H 1.09001 * 109.47316 * 23.18160 * 6 5 4 35 35 H 1.08999 * 109.47498 * 143.18785 * 6 5 4 36 36 H 0.96996 * 120.00167 * 180.02562 * 10 9 7 37 37 H 1.07999 * 126.96105 * 0.02562 * 18 17 15 38 38 H 1.08003 * 120.14351 * 0.07066 * 20 19 18 39 39 H 1.09000 * 109.47701 * 89.99646 * 22 21 20 40 40 H 1.09004 * 109.46995 * 209.99892 * 22 21 20 41 41 H 1.09000 * 109.46882 * 329.99454 * 22 21 20 42 42 H 1.07993 * 119.62822 * 179.97438 * 23 21 20 43 43 H 1.07997 * 120.07039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.2158 -0.8801 -1.3079 7 6 5.6856 -1.1537 -1.1190 8 1 6.3729 -0.3338 -0.9709 9 6 6.1532 -2.4507 -1.1352 10 7 7.4358 -2.6895 -0.9699 11 14 4.9647 -3.8687 -1.3920 12 1 4.8443 -4.1571 -2.8437 13 1 5.4725 -5.0739 -0.6884 14 1 3.6323 -3.5026 -0.8479 15 6 4.1625 1.3218 -2.3499 16 8 4.0304 2.5294 -2.2857 17 6 4.5247 0.6890 -3.6262 18 6 4.6129 1.3311 -4.8196 19 6 4.9990 0.3155 -5.7985 20 6 5.2472 0.3326 -7.1732 21 6 5.5990 -0.8226 -7.8122 22 6 5.8676 -0.8058 -9.2949 23 6 5.7106 -2.0120 -7.1046 24 6 5.4711 -2.0498 -5.7482 25 6 5.1111 -0.8872 -5.0763 26 8 4.8250 -0.6167 -3.7879 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 3.6499 -1.3735 -0.5176 35 1 3.8966 -1.2634 -2.2770 36 1 7.7647 -3.6019 -0.9817 37 1 4.4349 2.3796 -5.0075 38 1 5.1621 1.2551 -7.7283 39 1 6.9235 -0.6004 -9.4706 40 1 5.6100 -1.7751 -9.7218 41 1 5.2634 -0.0297 -9.7648 42 1 5.9891 -2.9175 -7.6231 43 1 5.5615 -2.9808 -5.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:03 Heat of formation + Delta-G solvation = -41.950226 kcal Electronic energy + Delta-G solvation = -27095.111517 eV Core-core repulsion = 23300.539604 eV Total energy + Delta-G solvation = -3794.571913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03324 -39.27696 -37.93624 -37.49209 -35.23519 -32.54568 -32.39996 -32.00535 -30.42624 -29.12836 -27.60373 -26.75779 -26.07771 -24.14687 -22.52516 -22.22675 -21.34524 -20.94155 -19.18785 -17.29360 -17.12276 -16.87300 -16.19499 -16.02072 -15.76122 -15.33372 -15.02162 -14.82015 -14.59432 -14.11679 -13.92274 -13.79152 -13.55319 -13.36934 -12.89420 -12.70091 -12.55494 -12.22133 -12.13727 -12.07000 -11.73982 -11.67277 -11.47528 -11.40099 -11.02892 -10.87009 -10.63686 -10.45503 -10.23184 -9.84953 -9.76390 -9.54724 -9.46680 -8.61354 -8.16347 -8.05614 -7.73208 -6.11505 -4.10607 0.95310 1.60856 2.23827 3.01410 3.24378 3.32238 3.36250 3.66493 3.68350 3.91546 3.99505 4.36514 4.67226 4.92193 4.95068 5.18831 5.21968 5.23958 5.31242 5.37567 5.43864 5.49285 5.50676 5.54856 5.56964 5.59156 5.63572 5.70724 5.82242 5.90745 5.99472 6.11375 6.18969 6.36478 6.45994 6.49516 6.66750 6.70194 6.87580 6.94975 7.22663 7.30584 7.52892 7.55467 7.97060 8.41773 8.61243 8.91878 9.48254 11.01522 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005356 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.950417 B = 5226.454886 C = 6616.822239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.046 3.954 4 C 0.121 3.879 5 N -0.568 5.568 6 C 0.206 3.794 7 C -0.529 4.529 8 H 0.075 0.925 9 C 0.081 3.919 10 N -0.894 5.894 11 Si 0.865 3.135 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.594 3.406 16 O -0.550 6.550 17 C 0.011 3.989 18 C -0.148 4.148 19 C -0.138 4.138 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.106 4.106 23 C -0.094 4.094 24 C -0.099 4.099 25 C 0.062 3.938 26 O -0.133 6.133 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.163 0.837 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 3.667 -8.825 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.032 4.032 4 C -0.002 4.002 5 N -0.296 5.296 6 C 0.086 3.914 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.122 4.122 10 N -0.532 5.532 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.382 3.618 16 O -0.431 6.431 17 C -0.040 4.040 18 C -0.169 4.169 19 C -0.139 4.139 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.163 4.163 23 C -0.112 4.112 24 C -0.117 4.117 25 C 0.012 3.988 26 O -0.032 6.032 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.180 0.820 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.191 3.729 -8.494 13.059 hybrid contribution -0.570 -0.666 -0.096 0.882 sum -9.761 3.063 -8.590 13.359 Atomic orbital electron populations 1.22694 0.81857 1.02426 0.99459 1.88003 1.18967 1.27716 1.95293 1.23055 0.94914 0.84898 1.00345 1.21487 0.91205 1.00177 0.87329 1.47841 1.62492 1.10690 1.08543 1.20133 0.98049 0.74936 0.98308 1.21269 0.90868 0.94160 1.50399 0.90676 1.24738 0.94815 0.98313 0.94331 1.69889 1.12972 1.20597 1.49741 0.87017 0.82280 0.82584 0.78989 1.19875 1.21073 1.18576 1.16789 0.77585 0.85587 0.81887 1.90770 1.54939 1.12814 1.84623 1.21985 1.03943 0.82323 0.95762 1.22499 1.04700 0.99669 0.90004 1.19890 1.06148 0.93148 0.94753 1.20079 0.99099 0.97948 0.91583 1.19411 1.02593 0.93170 0.96311 1.20700 1.01846 1.02439 0.91279 1.20768 1.00067 0.97840 0.92548 1.20048 1.02124 0.95940 0.93628 1.19978 1.00059 0.95653 0.83064 1.84757 1.69201 1.24863 1.24411 0.89912 0.94437 0.94471 0.92577 0.93014 0.88684 0.88798 0.93487 0.94018 0.92568 0.81985 0.85823 0.91430 0.91718 0.91802 0.85163 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.30 10.31 -35.23 -0.36 -6.66 16 3 C 0.05 0.69 6.25 37.16 0.23 0.92 16 4 C 0.12 2.14 5.74 -4.04 -0.02 2.11 16 5 N -0.57 -12.14 2.43 -176.49 -0.43 -12.57 16 6 C 0.21 4.88 3.72 -5.19 -0.02 4.86 16 7 C -0.53 -14.52 8.89 -34.44 -0.31 -14.82 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 10 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 11 Si 0.86 20.80 27.47 -169.99 -4.67 16.13 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 14 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 15 C 0.59 12.89 7.55 -12.72 -0.10 12.80 16 16 O -0.55 -12.05 16.47 5.23 0.09 -11.97 16 17 C 0.01 0.23 6.70 -36.91 -0.25 -0.01 16 18 C -0.15 -2.73 10.81 -37.24 -0.40 -3.13 16 19 C -0.14 -2.47 6.38 -105.19 -0.67 -3.14 16 20 C -0.07 -1.00 9.68 -39.62 -0.38 -1.38 16 21 C -0.11 -1.51 5.85 -104.99 -0.61 -2.13 16 22 C -0.11 -0.99 10.00 36.00 0.36 -0.63 16 23 C -0.09 -1.32 9.66 -39.52 -0.38 -1.70 16 24 C -0.10 -1.73 10.07 -39.45 -0.40 -2.13 16 25 C 0.06 1.24 7.41 -38.35 -0.28 0.95 16 26 O -0.13 -3.01 6.39 2.78 0.02 -2.99 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.66 8.03 -51.93 -0.42 1.24 16 33 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 34 H 0.05 1.12 6.84 -51.93 -0.35 0.77 16 35 H 0.04 1.02 4.84 -51.93 -0.25 0.77 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -32.48 363.81 -7.39 -39.88 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.07 Total: 2.40 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.22 Total: -3.76 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.34 Total: -38.50 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.26 Total: -21.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.48 -7.39 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.073 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds