Wall clock time and date at job start Tue Mar 31 2020 11:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99725 * 2 1 4 4 C 1.52999 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46849 * 65.00429 * 4 3 2 6 6 C 1.46501 * 119.99573 * 264.80741 * 5 4 3 7 7 C 1.50700 * 109.47203 * 263.18266 * 6 5 4 8 8 H 1.08006 * 120.00191 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00369 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00388 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99732 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47372 * 90.00005 * 11 9 7 13 13 H 1.48507 * 109.47367 * 209.99966 * 11 9 7 14 14 H 1.48501 * 109.47297 * 329.99832 * 11 9 7 15 15 C 1.34769 * 120.00273 * 84.80784 * 5 4 3 16 16 O 1.21654 * 119.99970 * 3.76276 * 15 5 4 17 17 C 1.46986 * 120.00004 * 183.76561 * 15 5 4 18 18 C 1.35802 * 125.13035 * 173.43518 * 17 15 5 19 19 C 1.46246 * 106.08007 * 179.97438 * 18 17 15 20 20 C 1.39702 * 134.19436 * 179.97438 * 19 18 17 21 21 C 1.36619 * 119.71483 * 180.02562 * 20 19 18 22 22 C 1.50693 * 119.78062 * 180.02562 * 21 20 19 23 23 C 1.38842 * 120.44166 * 0.02562 * 21 20 19 24 24 C 1.37798 * 120.74208 * 359.92297 * 23 21 20 25 25 C 1.39022 * 119.85733 * 0.11032 * 24 23 21 26 26 O 1.34719 * 133.24483 * 180.22825 * 25 24 23 27 27 H 1.09003 * 109.46912 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47402 * 300.00034 * 1 2 3 29 29 H 1.09000 * 109.47283 * 60.00091 * 1 2 3 30 30 H 1.08998 * 109.47307 * 60.00088 * 3 2 1 31 31 H 1.08997 * 109.47333 * 299.99853 * 3 2 1 32 32 H 1.09003 * 109.47594 * 305.00381 * 4 3 2 33 33 H 1.08998 * 109.47507 * 184.99775 * 4 3 2 34 34 H 1.09001 * 109.47316 * 23.18160 * 6 5 4 35 35 H 1.08999 * 109.47498 * 143.18785 * 6 5 4 36 36 H 0.96996 * 120.00167 * 180.02562 * 10 9 7 37 37 H 1.07999 * 126.96105 * 0.02562 * 18 17 15 38 38 H 1.08003 * 120.14351 * 0.07066 * 20 19 18 39 39 H 1.09000 * 109.47701 * 89.99646 * 22 21 20 40 40 H 1.09004 * 109.46995 * 209.99892 * 22 21 20 41 41 H 1.09000 * 109.46882 * 329.99454 * 22 21 20 42 42 H 1.07993 * 119.62822 * 179.97438 * 23 21 20 43 43 H 1.07997 * 120.07039 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.2158 -0.8801 -1.3079 7 6 5.6856 -1.1537 -1.1190 8 1 6.3729 -0.3338 -0.9709 9 6 6.1532 -2.4507 -1.1352 10 7 7.4358 -2.6895 -0.9699 11 14 4.9647 -3.8687 -1.3920 12 1 4.8443 -4.1571 -2.8437 13 1 5.4725 -5.0739 -0.6884 14 1 3.6323 -3.5026 -0.8479 15 6 4.1625 1.3218 -2.3499 16 8 4.0304 2.5294 -2.2857 17 6 4.5247 0.6890 -3.6262 18 6 4.6129 1.3311 -4.8196 19 6 4.9990 0.3155 -5.7985 20 6 5.2472 0.3326 -7.1732 21 6 5.5990 -0.8226 -7.8122 22 6 5.8676 -0.8058 -9.2949 23 6 5.7106 -2.0120 -7.1046 24 6 5.4711 -2.0498 -5.7482 25 6 5.1111 -0.8872 -5.0763 26 8 4.8250 -0.6167 -3.7879 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 3.6499 -1.3735 -0.5176 35 1 3.8966 -1.2634 -2.2770 36 1 7.7647 -3.6019 -0.9817 37 1 4.4349 2.3796 -5.0075 38 1 5.1621 1.2551 -7.7283 39 1 6.9235 -0.6004 -9.4706 40 1 5.6100 -1.7751 -9.7218 41 1 5.2634 -0.0297 -9.7648 42 1 5.9891 -2.9175 -7.6231 43 1 5.5615 -2.9808 -5.2084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071141102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:02 Heat of formation + Delta-G solvation = -62.081725 kcal Electronic energy + Delta-G solvation = -27095.984484 eV Core-core repulsion = 23300.539604 eV Total energy + Delta-G solvation = -3795.444880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.47107 -40.85216 -39.15195 -38.74948 -36.91636 -34.62579 -33.79123 -33.13399 -31.88808 -30.55671 -29.38833 -27.80177 -27.15733 -25.53814 -24.44185 -23.53571 -22.61819 -22.34621 -20.71333 -19.18140 -18.73690 -18.36868 -17.67383 -17.37413 -17.21069 -16.62232 -16.44583 -16.21941 -15.90814 -15.76525 -15.34245 -15.04896 -14.91894 -14.52757 -14.39630 -14.25580 -14.12983 -13.67348 -13.56793 -13.14296 -12.95979 -12.85919 -12.79645 -12.67974 -12.54903 -12.43130 -12.11467 -11.99519 -11.85257 -11.72714 -11.36757 -11.22772 -10.77867 -10.63050 -9.70845 -9.39374 -9.17826 -8.30672 -6.34369 -0.42338 0.36195 0.82219 1.32562 1.32711 1.44550 1.58639 2.08926 2.12854 2.31853 2.68323 2.86658 3.04696 3.26208 3.64180 3.91482 3.91879 4.05435 4.06583 4.15699 4.28991 4.34398 4.40175 4.50269 4.50749 4.51990 4.56710 4.71179 4.75866 4.79641 4.83334 4.84454 4.94453 4.96318 5.15606 5.20303 5.30236 5.36576 5.43080 5.50541 5.58322 5.75864 6.07064 6.13240 6.23833 6.40319 6.65137 6.94800 7.28657 8.86218 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011043 B = 0.005356 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.950417 B = 5226.454886 C = 6616.822239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.056 3.944 4 C 0.112 3.888 5 N -0.576 5.576 6 C 0.225 3.775 7 C -0.524 4.524 8 H 0.027 0.973 9 C 0.029 3.971 10 N -0.941 5.941 11 Si 0.927 3.073 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.246 1.246 15 C 0.590 3.410 16 O -0.560 6.560 17 C -0.037 4.037 18 C -0.125 4.125 19 C -0.154 4.154 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.075 4.075 24 C -0.131 4.131 25 C 0.025 3.975 26 O -0.167 6.167 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.267 0.733 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.167 0.833 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 3.408 -11.506 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.022 4.022 4 C -0.010 4.010 5 N -0.303 5.303 6 C 0.104 3.896 7 C -0.562 4.562 8 H 0.045 0.955 9 C -0.170 4.170 10 N -0.581 5.581 11 Si 0.750 3.250 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.170 1.170 15 C 0.378 3.622 16 O -0.443 6.443 17 C -0.087 4.087 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.084 4.084 21 C -0.108 4.108 22 C -0.160 4.160 23 C -0.093 4.093 24 C -0.149 4.149 25 C -0.023 4.023 26 O -0.068 6.068 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.202 0.798 38 H 0.174 0.826 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.184 0.816 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.791 3.495 -11.170 15.919 hybrid contribution 0.006 -0.533 0.573 0.783 sum -10.785 2.962 -10.597 15.407 Atomic orbital electron populations 1.22900 0.79659 1.03535 1.00817 1.87943 1.21451 1.28359 1.95566 1.22939 0.92704 0.84885 1.01634 1.21742 0.93516 1.00032 0.85726 1.47871 1.62789 1.09820 1.09825 1.19738 0.95190 0.76673 0.98046 1.21326 0.92237 0.92921 1.49714 0.95493 1.25544 0.96430 1.01117 0.93894 1.70033 1.15171 1.21410 1.51507 0.86015 0.80468 0.78953 0.79555 1.18748 1.20390 1.16988 1.16958 0.77287 0.85617 0.82298 1.90729 1.55718 1.12888 1.85008 1.22065 1.07395 0.82763 0.96492 1.22857 1.01849 1.00555 0.89286 1.20125 1.07231 0.91959 0.96144 1.20537 0.97702 0.99988 0.90130 1.19951 1.00216 0.92058 0.98531 1.20798 1.02972 1.04287 0.87933 1.21267 0.97151 0.99819 0.91066 1.20276 1.04353 0.95057 0.95239 1.20543 1.01599 0.97544 0.82650 1.84622 1.70503 1.25492 1.26190 0.89033 0.92149 0.93970 0.89039 0.93708 0.89013 0.88257 0.93283 0.94157 0.92366 0.79793 0.82561 0.90178 0.89896 0.90087 0.81597 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.35 10.31 -148.98 -1.54 -14.89 16 3 C 0.06 1.65 6.25 71.98 0.45 2.10 16 4 C 0.11 4.04 5.74 86.38 0.50 4.53 16 5 N -0.58 -25.60 2.43 -830.52 -2.02 -27.62 16 6 C 0.22 11.06 3.72 85.63 0.32 11.38 16 7 C -0.52 -30.31 8.89 25.60 0.23 -30.09 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.03 1.67 5.47 84.66 0.46 2.13 16 10 N -0.94 -58.60 13.96 21.45 0.30 -58.31 16 11 Si 0.93 43.75 27.47 68.60 1.88 45.63 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 15 C 0.59 26.68 7.55 86.54 0.65 27.33 16 16 O -0.56 -25.22 16.47 -4.20 -0.07 -25.29 16 17 C -0.04 -1.64 6.70 24.00 0.16 -1.48 16 18 C -0.12 -4.64 10.81 23.79 0.26 -4.38 16 19 C -0.15 -5.41 6.38 -20.23 -0.13 -5.54 16 20 C -0.07 -1.72 9.68 22.24 0.22 -1.51 16 21 C -0.11 -2.44 5.85 -20.10 -0.12 -2.55 16 22 C -0.10 -1.40 10.00 71.23 0.71 -0.68 16 23 C -0.08 -1.92 9.66 22.31 0.22 -1.71 16 24 C -0.13 -4.58 10.07 22.35 0.23 -4.35 16 25 C 0.03 1.03 7.41 23.07 0.17 1.20 16 26 O -0.17 -7.94 6.39 -12.98 -0.08 -8.02 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 3.30 8.03 -2.39 -0.02 3.28 16 33 H 0.10 3.41 7.53 -2.39 -0.02 3.39 16 34 H 0.05 2.38 6.84 -2.39 -0.02 2.36 16 35 H 0.04 2.05 4.84 -2.39 -0.01 2.03 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.18 5.75 8.06 -2.91 -0.02 5.72 16 38 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.88 8.08 -2.38 -0.02 0.86 16 41 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.30 363.81 5.00 -70.31 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.96 Total: 19.94 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.57 Total: -1.76 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.72 Total: -85.93 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.69 Total: -48.19 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -75.30 5.00 -70.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.225 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds