Wall clock time and date at job start Tue Mar 31 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34222 * 116.99738 * 2 1 4 4 O 1.20825 * 120.00261 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99769 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47132 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99925 * 270.00030 * 6 5 3 8 8 H 1.08002 * 119.99947 * 139.29859 * 7 6 5 9 9 C 1.38948 * 120.00362 * 319.29962 * 7 6 5 10 10 N 1.31408 * 119.99781 * 160.22795 * 9 7 6 11 11 Si 1.86800 * 119.99770 * 340.23733 * 9 7 6 12 12 H 1.48502 * 109.47442 * 94.88197 * 11 9 7 13 13 H 1.48504 * 109.47006 * 214.88217 * 11 9 7 14 14 H 1.48499 * 109.46881 * 334.87782 * 11 9 7 15 15 C 1.34780 * 119.99958 * 90.00189 * 6 5 3 16 16 O 1.21289 * 119.99924 * 5.16635 * 15 6 5 17 17 C 1.50702 * 120.00011 * 185.16739 * 15 6 5 18 18 H 1.09001 * 115.56172 * 30.33227 * 17 15 6 19 19 C 1.53072 * 117.49309 * 244.62349 * 17 15 6 20 20 C 1.52996 * 59.98416 * 252.51513 * 19 17 15 21 21 H 1.08998 * 117.50179 * 107.49960 * 20 19 17 22 22 C 1.50696 * 117.49874 * 252.50187 * 20 19 17 23 23 C 1.38259 * 120.00421 * 53.70853 * 22 20 19 24 24 C 1.38213 * 120.00175 * 179.97438 * 23 22 20 25 25 C 1.38250 * 119.99981 * 0.04912 * 24 23 22 26 26 C 1.38214 * 120.00156 * 359.94809 * 25 24 23 27 27 C 1.38219 * 119.99916 * 233.73030 * 22 20 19 28 28 C 1.50695 * 119.99888 * 0.02562 * 27 22 20 29 29 H 1.08999 * 109.47120 * 60.00078 * 1 2 3 30 30 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47231 * 300.00447 * 1 2 3 32 32 H 1.09000 * 109.46956 * 60.00408 * 5 3 2 33 33 H 1.08999 * 109.47248 * 299.99814 * 5 3 2 34 34 H 0.97011 * 119.99683 * 180.02562 * 10 9 7 35 35 H 1.08997 * 117.51324 * 145.03776 * 19 17 15 36 36 H 1.09007 * 117.51075 * 359.97438 * 19 17 15 37 37 H 1.08004 * 119.99241 * 359.72396 * 23 22 20 38 38 H 1.08000 * 119.99504 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.00041 * 179.97438 * 25 24 23 40 40 H 1.08003 * 119.99706 * 179.97438 * 26 25 24 41 41 H 1.08996 * 109.47238 * 89.99604 * 28 27 22 42 42 H 1.09006 * 109.47204 * 209.99952 * 28 27 22 43 43 H 1.08997 * 109.47371 * 329.99556 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3363 -1.1878 8 1 3.8423 4.3570 -1.3017 9 6 4.8040 2.6887 -2.2450 10 7 4.6557 3.1372 -3.4712 11 14 5.8580 1.1805 -1.9230 12 1 5.0417 -0.0447 -2.1178 13 1 7.0042 1.1669 -2.8671 14 1 6.3660 1.2203 -0.5282 15 6 4.1723 3.3267 1.1667 16 8 4.0917 2.7226 2.2153 17 6 4.4856 4.8008 1.1686 18 1 4.0613 5.3729 0.3434 19 6 5.8565 5.2313 1.6962 20 6 4.5991 5.4972 2.5262 21 1 4.4467 4.8893 3.4179 22 6 4.1157 6.9215 2.6201 23 6 3.8862 7.6511 1.4683 24 6 3.4424 8.9572 1.5546 25 6 3.2288 9.5344 2.7925 26 6 3.4582 8.8050 3.9439 27 6 3.9021 7.4986 3.8578 28 6 4.1533 6.7037 5.1132 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 5.0934 2.6848 -4.2094 35 1 6.3342 6.0865 1.2181 36 1 6.5314 4.4483 2.0422 37 1 4.0577 7.2016 0.5014 38 1 3.2628 9.5269 0.6548 39 1 2.8824 10.5551 2.8599 40 1 3.2917 9.2562 4.9110 41 1 5.1870 6.8418 5.4299 42 1 3.4828 7.0473 5.9010 43 1 3.9715 5.6471 4.9167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077022832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:14 Heat of formation + Delta-G solvation = -55.110928 kcal Electronic energy + Delta-G solvation = -26661.574597 eV Core-core repulsion = 22866.431993 eV Total energy + Delta-G solvation = -3795.142604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16056 -39.72134 -38.66296 -36.34044 -35.61934 -34.79085 -32.70928 -32.07035 -30.39027 -29.05157 -26.86817 -26.66537 -25.16281 -23.79815 -22.83222 -21.48308 -20.74074 -19.87335 -18.98731 -17.42152 -17.25794 -16.98745 -16.22176 -15.85434 -15.47569 -15.30497 -15.15985 -14.60010 -14.25742 -14.09839 -13.75710 -13.47308 -13.23878 -13.03544 -12.93983 -12.66580 -12.56575 -12.20157 -12.06590 -11.89712 -11.81110 -11.71174 -11.51394 -11.03605 -10.89841 -10.67878 -10.55278 -10.37338 -10.32715 -10.09319 -9.94172 -9.80096 -9.36388 -8.83198 -8.58980 -8.22255 -7.99713 -6.55929 -4.21720 1.48452 1.54731 2.82705 2.91393 2.96049 3.15795 3.19432 3.52460 3.83589 3.99940 4.12470 4.58859 4.84241 4.92957 4.96364 5.07048 5.20591 5.31733 5.33943 5.38637 5.41545 5.43636 5.49987 5.54557 5.66284 5.71268 5.77104 5.78579 5.81958 5.85042 5.94043 6.02844 6.16132 6.25483 6.30793 6.43198 6.56522 6.66697 6.71708 6.82737 6.92458 7.13469 7.18066 7.92792 8.13378 8.36991 8.81312 9.15805 9.46267 10.54298 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004203 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.941787 B = 6660.444535 C = 7472.742590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.488 6.488 5 C 0.108 3.892 6 N -0.447 5.447 7 C -0.340 4.340 8 H 0.107 0.893 9 C 0.068 3.932 10 N -0.854 5.854 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.528 3.472 16 O -0.590 6.590 17 C -0.139 4.139 18 H 0.128 0.872 19 C -0.135 4.135 20 C -0.106 4.106 21 H 0.124 0.876 22 C -0.041 4.041 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.082 4.082 28 C -0.118 4.118 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.277 0.723 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 4.005 9.246 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.373 6.373 5 C -0.018 4.018 6 N -0.167 5.167 7 C -0.467 4.467 8 H 0.125 0.875 9 C -0.140 4.140 10 N -0.489 5.489 11 Si 0.688 3.312 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.319 3.681 16 O -0.474 6.474 17 C -0.160 4.160 18 H 0.146 0.854 19 C -0.173 4.173 20 C -0.125 4.125 21 H 0.142 0.858 22 C -0.041 4.041 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.082 4.082 28 C -0.174 4.174 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.318 3.999 9.527 10.416 hybrid contribution 0.123 -0.692 -0.451 0.835 sum -1.195 3.307 9.075 9.733 Atomic orbital electron populations 1.23140 0.77520 1.02841 1.02276 1.86521 1.22691 1.34504 1.84934 1.24745 0.92833 0.81232 0.72339 1.90621 1.66573 1.36226 1.43839 1.21362 0.86858 0.88520 1.05018 1.43253 1.58574 1.08314 1.06566 1.19036 1.39211 1.00545 0.87868 0.87550 1.25353 0.95991 0.97968 0.94713 1.69743 1.39666 1.40968 0.98496 0.87142 0.81408 0.82668 0.80009 1.19663 1.20645 1.17944 1.19499 0.77728 0.87986 0.82906 1.90539 1.56189 1.68655 1.32063 1.22130 1.02150 0.94127 0.97588 0.85385 1.22958 0.89933 1.02815 1.01583 1.21183 1.02165 0.92825 0.96286 0.85796 1.19074 0.98509 0.93834 0.92641 1.21181 0.99093 0.94276 0.98614 1.21095 1.00095 0.95305 0.97561 1.21053 1.01221 0.99658 0.92689 1.20938 1.00950 0.93951 0.98260 1.19685 0.99431 0.94439 0.94607 1.20850 1.01745 1.00405 0.94398 0.92155 0.88711 0.92350 0.87680 0.86900 0.91297 0.88162 0.88274 0.85422 0.86207 0.86507 0.86431 0.91239 0.91975 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.91 10.57 -39.24 -0.41 -7.33 16 3 C 0.45 9.93 8.02 36.01 0.29 10.22 16 4 O -0.49 -12.10 16.18 -18.75 -0.30 -12.40 16 5 C 0.11 2.40 4.82 -5.19 -0.03 2.37 16 6 N -0.45 -10.78 1.61 -116.09 -0.19 -10.97 16 7 C -0.34 -8.73 9.07 -14.93 -0.14 -8.86 16 8 H 0.11 2.89 6.77 -52.49 -0.36 2.53 16 9 C 0.07 1.73 5.33 -17.47 -0.09 1.64 16 10 N -0.85 -23.00 13.96 55.50 0.77 -22.23 16 11 Si 0.86 19.16 25.03 -169.99 -4.26 14.90 16 12 H -0.27 -5.71 6.70 56.52 0.38 -5.34 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.53 12.32 7.41 -10.98 -0.08 12.24 16 16 O -0.59 -14.45 15.82 5.55 0.09 -14.36 16 17 C -0.14 -2.76 4.63 -91.73 -0.43 -3.19 16 18 H 0.13 2.58 4.99 -51.93 -0.26 2.32 16 19 C -0.14 -2.25 9.79 -26.70 -0.26 -2.51 16 20 C -0.11 -1.81 5.10 -91.78 -0.47 -2.28 16 21 H 0.12 2.18 5.63 -51.93 -0.29 1.89 16 22 C -0.04 -0.64 5.63 -104.62 -0.59 -1.22 16 23 C -0.11 -1.73 9.17 -39.58 -0.36 -2.10 16 24 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 25 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 26 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 27 C -0.08 -1.14 5.88 -104.63 -0.62 -1.75 16 28 C -0.12 -1.39 9.59 36.00 0.35 -1.04 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.11 2.31 3.48 -51.93 -0.18 2.13 16 33 H 0.11 2.33 7.36 -51.93 -0.38 1.95 16 34 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.13 1.97 6.22 -52.48 -0.33 1.64 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.07 0.96 6.02 -51.93 -0.31 0.64 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -30.93 358.77 -6.92 -37.85 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.49 Total: 9.92 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.54 Total: -0.80 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.59 Total: -33.20 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.63 Total: -34.09 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.26 Total: 14.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.93 -6.92 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077022832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.257 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds