Wall clock time and date at job start Tue Mar 31 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34222 * 116.99738 * 2 1 4 4 O 1.20825 * 120.00261 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99769 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47132 * 179.97438 * 5 3 2 7 7 C 1.37099 * 119.99925 * 270.00030 * 6 5 3 8 8 H 1.08002 * 119.99947 * 139.29859 * 7 6 5 9 9 C 1.38948 * 120.00362 * 319.29962 * 7 6 5 10 10 N 1.31408 * 119.99781 * 160.22795 * 9 7 6 11 11 Si 1.86800 * 119.99770 * 340.23733 * 9 7 6 12 12 H 1.48502 * 109.47442 * 94.88197 * 11 9 7 13 13 H 1.48504 * 109.47006 * 214.88217 * 11 9 7 14 14 H 1.48499 * 109.46881 * 334.87782 * 11 9 7 15 15 C 1.34780 * 119.99958 * 90.00189 * 6 5 3 16 16 O 1.21289 * 119.99924 * 5.16635 * 15 6 5 17 17 C 1.50702 * 120.00011 * 185.16739 * 15 6 5 18 18 H 1.09001 * 115.56172 * 30.33227 * 17 15 6 19 19 C 1.53072 * 117.49309 * 244.62349 * 17 15 6 20 20 C 1.52996 * 59.98416 * 252.51513 * 19 17 15 21 21 H 1.08998 * 117.50179 * 107.49960 * 20 19 17 22 22 C 1.50696 * 117.49874 * 252.50187 * 20 19 17 23 23 C 1.38259 * 120.00421 * 53.70853 * 22 20 19 24 24 C 1.38213 * 120.00175 * 179.97438 * 23 22 20 25 25 C 1.38250 * 119.99981 * 0.04912 * 24 23 22 26 26 C 1.38214 * 120.00156 * 359.94809 * 25 24 23 27 27 C 1.38219 * 119.99916 * 233.73030 * 22 20 19 28 28 C 1.50695 * 119.99888 * 0.02562 * 27 22 20 29 29 H 1.08999 * 109.47120 * 60.00078 * 1 2 3 30 30 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47231 * 300.00447 * 1 2 3 32 32 H 1.09000 * 109.46956 * 60.00408 * 5 3 2 33 33 H 1.08999 * 109.47248 * 299.99814 * 5 3 2 34 34 H 0.97011 * 119.99683 * 180.02562 * 10 9 7 35 35 H 1.08997 * 117.51324 * 145.03776 * 19 17 15 36 36 H 1.09007 * 117.51075 * 359.97438 * 19 17 15 37 37 H 1.08004 * 119.99241 * 359.72396 * 23 22 20 38 38 H 1.08000 * 119.99504 * 180.02562 * 24 23 22 39 39 H 1.08004 * 120.00041 * 179.97438 * 25 24 23 40 40 H 1.08003 * 119.99706 * 179.97438 * 26 25 24 41 41 H 1.08996 * 109.47238 * 89.99604 * 28 27 22 42 42 H 1.09006 * 109.47204 * 209.99952 * 28 27 22 43 43 H 1.08997 * 109.47371 * 329.99556 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3363 -1.1878 8 1 3.8423 4.3570 -1.3017 9 6 4.8040 2.6887 -2.2450 10 7 4.6557 3.1372 -3.4712 11 14 5.8580 1.1805 -1.9230 12 1 5.0417 -0.0447 -2.1178 13 1 7.0042 1.1669 -2.8671 14 1 6.3660 1.2203 -0.5282 15 6 4.1723 3.3267 1.1667 16 8 4.0917 2.7226 2.2153 17 6 4.4856 4.8008 1.1686 18 1 4.0613 5.3729 0.3434 19 6 5.8565 5.2313 1.6962 20 6 4.5991 5.4972 2.5262 21 1 4.4467 4.8893 3.4179 22 6 4.1157 6.9215 2.6201 23 6 3.8862 7.6511 1.4683 24 6 3.4424 8.9572 1.5546 25 6 3.2288 9.5344 2.7925 26 6 3.4582 8.8050 3.9439 27 6 3.9021 7.4986 3.8578 28 6 4.1533 6.7037 5.1132 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 5.0934 2.6848 -4.2094 35 1 6.3342 6.0865 1.2181 36 1 6.5314 4.4483 2.0422 37 1 4.0577 7.2016 0.5014 38 1 3.2628 9.5269 0.6548 39 1 2.8824 10.5551 2.8599 40 1 3.2917 9.2562 4.9110 41 1 5.1870 6.8418 5.4299 42 1 3.4828 7.0473 5.9010 43 1 3.9715 5.6471 4.9167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077022832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:13 Heat of formation + Delta-G solvation = -71.237796 kcal Electronic energy + Delta-G solvation = -26662.273911 eV Core-core repulsion = 22866.431993 eV Total energy + Delta-G solvation = -3795.841917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83418 -41.10342 -40.15177 -37.87657 -37.20424 -36.62728 -34.04420 -33.71907 -31.55319 -30.66627 -28.16294 -27.73372 -27.07926 -25.12781 -24.30854 -22.65223 -22.29476 -21.15432 -20.76017 -19.13107 -18.92146 -18.64036 -17.60819 -17.38950 -17.13136 -16.93545 -16.52345 -15.88545 -15.75171 -15.58504 -14.96215 -14.88748 -14.74077 -14.58931 -14.33197 -14.24253 -13.93381 -13.57294 -13.40731 -13.18888 -13.02100 -13.00593 -12.95321 -12.77929 -12.44781 -11.98318 -11.96278 -11.85717 -11.74537 -11.72211 -11.58252 -11.27993 -11.17633 -10.67715 -9.91977 -9.64623 -9.34225 -8.53774 -6.23956 0.40597 0.50108 1.07922 1.17205 1.26552 1.37553 1.44825 1.85669 2.14242 2.37920 2.72659 2.88034 3.25338 3.61125 3.78694 3.84333 3.89928 3.99000 4.00873 4.06780 4.16010 4.20789 4.26302 4.28159 4.28301 4.42164 4.48113 4.61547 4.69489 4.73607 4.82746 4.87243 4.96100 5.06332 5.15601 5.18887 5.20848 5.28508 5.35287 5.61921 5.65943 5.80681 5.99736 6.09795 6.15801 6.67471 6.85934 7.22139 7.56815 8.60104 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004203 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.941787 B = 6660.444535 C = 7472.742590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.450 3.550 4 O -0.524 6.524 5 C 0.099 3.901 6 N -0.457 5.457 7 C -0.341 4.341 8 H 0.076 0.924 9 C 0.029 3.971 10 N -0.894 5.894 11 Si 0.915 3.085 12 H -0.248 1.248 13 H -0.274 1.274 14 H -0.254 1.254 15 C 0.521 3.479 16 O -0.607 6.607 17 C -0.169 4.169 18 H 0.114 0.886 19 C -0.118 4.118 20 C -0.086 4.086 21 H 0.118 0.882 22 C -0.066 4.066 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.090 4.090 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.282 0.718 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 3.955 10.892 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.292 3.708 4 O -0.412 6.412 5 C -0.026 4.026 6 N -0.177 5.177 7 C -0.468 4.468 8 H 0.093 0.907 9 C -0.175 4.175 10 N -0.530 5.530 11 Si 0.738 3.262 12 H -0.174 1.174 13 H -0.200 1.200 14 H -0.178 1.178 15 C 0.313 3.687 16 O -0.492 6.492 17 C -0.190 4.190 18 H 0.132 0.868 19 C -0.156 4.156 20 C -0.104 4.104 21 H 0.136 0.864 22 C -0.066 4.066 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.090 4.090 28 C -0.172 4.172 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.215 3.922 11.173 11.904 hybrid contribution -0.048 -0.628 -0.925 1.119 sum -1.264 3.293 10.248 10.838 Atomic orbital electron populations 1.23572 0.74819 1.05951 1.02197 1.86489 1.25194 1.32261 1.84060 1.24655 0.92894 0.81666 0.71550 1.90606 1.67302 1.37596 1.45727 1.21485 0.87443 0.87678 1.05958 1.43307 1.59155 1.09060 1.06193 1.18799 1.39544 0.99791 0.88686 0.90682 1.25937 0.96568 1.00915 0.94108 1.69821 1.40835 1.42907 0.99408 0.86282 0.80000 0.80012 0.79903 1.17374 1.20023 1.17752 1.20053 0.76934 0.89214 0.82463 1.90501 1.56997 1.69414 1.32311 1.22038 1.05281 0.92242 0.99394 0.86775 1.23056 0.88990 1.03053 1.00478 1.21145 1.01567 0.93488 0.94226 0.86418 1.19085 1.00555 0.93132 0.93814 1.21200 1.00487 0.95478 0.97963 1.21351 0.99818 0.94612 0.99152 1.21461 0.99629 1.00996 0.91919 1.21327 0.99645 0.93222 0.99833 1.19984 0.99082 0.95472 0.94461 1.20876 1.03130 0.99127 0.94112 0.92517 0.83967 0.92276 0.87198 0.85283 0.90778 0.86480 0.87890 0.87046 0.84625 0.83310 0.83335 0.89917 0.89858 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.14 10.57 -51.34 -0.54 -13.68 16 3 C 0.45 20.02 8.02 71.24 0.57 20.59 16 4 O -0.52 -26.65 16.18 21.97 0.36 -26.30 16 5 C 0.10 4.40 4.82 85.63 0.41 4.82 16 6 N -0.46 -22.61 1.61 -639.58 -1.03 -23.64 16 7 C -0.34 -18.25 9.07 84.04 0.76 -17.48 16 8 H 0.08 4.39 6.77 -2.91 -0.02 4.37 16 9 C 0.03 1.54 5.33 84.93 0.45 1.99 16 10 N -0.89 -49.31 13.96 21.66 0.30 -49.00 16 11 Si 0.91 39.12 25.03 68.60 1.72 40.83 16 12 H -0.25 -9.72 6.70 99.48 0.67 -9.06 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 15 C 0.52 25.09 7.41 87.66 0.65 25.74 16 16 O -0.61 -30.22 15.82 -3.06 -0.05 -30.27 16 17 C -0.17 -7.03 4.63 -11.52 -0.05 -7.08 16 18 H 0.11 5.03 4.99 -2.39 -0.01 5.01 16 19 C -0.12 -4.01 9.79 30.62 0.30 -3.71 16 20 C -0.09 -3.00 5.10 -11.54 -0.06 -3.06 16 21 H 0.12 4.24 5.63 -2.39 -0.01 4.23 16 22 C -0.07 -2.08 5.63 -19.87 -0.11 -2.19 16 23 C -0.13 -4.17 9.17 22.27 0.20 -3.96 16 24 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 25 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 26 C -0.12 -2.69 9.70 22.27 0.22 -2.48 16 27 C -0.09 -2.38 5.88 -19.87 -0.12 -2.49 16 28 C -0.12 -2.55 9.59 71.23 0.68 -1.87 16 29 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 32 H 0.11 4.72 3.48 -2.39 -0.01 4.71 16 33 H 0.13 5.25 7.36 -2.39 -0.02 5.23 16 34 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 35 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.11 3.73 6.22 -2.91 -0.02 3.72 16 38 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 43 H 0.06 1.46 6.02 -2.39 -0.01 1.45 16 Total: -1.00 -68.77 358.77 7.31 -61.46 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 1.00 Total: 35.44 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.56 Total: 5.17 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.73 Total: -72.65 kcal Atomic # 8 Polarization: -70.02 SS G_CDS: -0.24 Total: -70.25 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.72 Total: 40.83 kcal Total: -68.77 7.31 -61.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077022832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.780 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds