Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99730 * 2 1 4 4 H 1.48499 * 109.47133 * 240.00416 * 3 2 1 5 5 H 1.48504 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47401 * 120.00118 * 3 2 1 7 7 C 1.37874 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99969 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99673 * 170.00681 * 10 9 7 12 12 C 1.50704 * 109.46869 * 199.57963 * 11 10 9 13 13 C 1.35041 * 126.08031 * 258.00359 * 12 11 10 14 14 N 1.35055 * 108.02402 * 179.89286 * 13 12 11 15 15 H 0.96999 * 125.91311 * 180.12131 * 14 13 12 16 16 N 1.40069 * 108.17529 * 0.37016 * 14 13 12 17 17 C 1.31778 * 108.09002 * 359.76998 * 16 14 13 18 18 C 1.47914 * 126.06835 * 180.02562 * 17 16 14 19 19 C 1.34747 * 125.26594 * 324.96211 * 18 17 16 20 20 C 1.38023 * 114.70032 * 179.97438 * 19 18 17 21 21 C 1.33570 * 115.06271 * 359.97438 * 20 19 18 22 22 S 1.75861 * 109.75930 * 359.76014 * 21 20 19 23 23 C 1.46907 * 111.00120 * 293.95401 * 10 9 7 24 24 C 1.52993 * 109.47093 * 294.53980 * 23 10 9 25 25 C 1.53002 * 117.49954 * 245.19871 * 24 23 10 26 26 C 1.53003 * 117.49840 * 176.53915 * 24 23 10 27 27 H 0.97005 * 120.00421 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46727 * 60.00503 * 9 7 2 29 29 H 1.08998 * 109.47202 * 300.00540 * 9 7 2 30 30 H 1.09002 * 109.47085 * 319.57134 * 11 10 9 31 31 H 1.08991 * 109.47656 * 79.58035 * 11 10 9 32 32 H 1.07996 * 125.99009 * 0.04447 * 13 12 11 33 33 H 1.08004 * 122.64591 * 359.97438 * 19 18 17 34 34 H 1.08003 * 122.46733 * 180.02562 * 20 19 18 35 35 H 1.07997 * 125.11850 * 180.02562 * 21 20 19 36 36 H 1.08992 * 109.47127 * 174.53770 * 23 10 9 37 37 H 1.09007 * 109.46598 * 54.54111 * 23 10 9 38 38 H 1.09006 * 115.55665 * 30.87511 * 24 23 10 39 39 H 1.09005 * 117.49561 * 0.02562 * 25 24 23 40 40 H 1.08995 * 117.50061 * 145.02166 * 25 24 23 41 41 H 1.09004 * 117.50294 * 214.97863 * 26 24 23 42 42 H 1.09005 * 117.49792 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5212 -4.8935 0.2375 12 6 2.5213 -5.9196 0.7045 13 6 3.0640 -6.9010 -0.0477 14 7 3.9121 -7.6051 0.7327 15 1 4.4422 -8.3678 0.4531 16 7 3.8895 -7.0468 2.0171 17 6 3.0521 -6.0294 2.0064 18 6 2.7270 -5.1569 3.1557 19 6 2.6474 -5.5586 4.4394 20 6 2.3287 -4.5602 5.3375 21 6 2.1487 -3.3512 4.7991 22 16 2.3930 -3.4327 3.0594 23 6 2.9711 -3.6539 -1.2539 24 6 2.0282 -3.9648 -2.4179 25 6 2.2320 -5.2882 -3.1582 26 6 2.6232 -3.9683 -3.8275 27 1 -0.4851 0.8401 -0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 0.7554 -4.7587 1.0013 31 1 1.0560 -5.2343 -0.6874 32 1 2.8581 -7.0884 -1.0911 33 1 2.8194 -6.5812 4.7416 34 1 2.2327 -4.7430 6.3976 35 1 1.8959 -2.4572 5.3498 36 1 3.7358 -4.4278 -1.1891 37 1 3.4460 -2.6868 -1.4192 38 1 1.0059 -3.6040 -2.3042 39 1 3.0377 -5.9376 -2.8155 40 1 1.3439 -5.7979 -3.5316 41 1 1.9923 -3.6103 -4.6411 42 1 3.6866 -3.7496 -3.9255 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = 143.080135 kcal Electronic energy + Delta-G solvation = -24561.408265 eV Core-core repulsion = 21249.905493 eV Total energy + Delta-G solvation = -3311.502772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95998 -38.05277 -37.14443 -35.19015 -32.68483 -32.00854 -30.54540 -28.34253 -27.13951 -26.44422 -24.10003 -23.61593 -22.20419 -21.60712 -21.19390 -20.01592 -19.18693 -18.39196 -17.40371 -16.42295 -16.20194 -15.54535 -15.03078 -14.97020 -14.40865 -14.36561 -13.81668 -13.66416 -13.31267 -12.95307 -12.59784 -12.44199 -12.09271 -12.04485 -11.76534 -11.69918 -11.28069 -11.25470 -11.12825 -10.98423 -10.67617 -10.59474 -10.35053 -10.09752 -9.83806 -9.74252 -9.55645 -9.40801 -9.14137 -8.43662 -8.36660 -7.89835 -7.80510 -7.15875 -5.98828 -3.98574 1.20934 2.02535 2.27868 2.65766 2.89950 3.07518 3.35119 3.39679 3.42536 3.47991 4.17165 4.46292 4.77672 4.92976 5.12853 5.19541 5.31775 5.37853 5.47192 5.50192 5.50860 5.59287 5.80819 5.91197 5.92514 5.96379 6.04856 6.15632 6.27755 6.31912 6.35923 6.46201 6.48924 6.55284 6.62625 6.86118 6.88038 6.89867 7.34693 7.40914 7.42951 7.81764 7.85039 8.13490 8.25541 8.59011 9.08437 9.64888 11.11668 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.006558 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.624582 B = 4268.455914 C = 6662.120204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.525 5.525 11 C 0.118 3.882 12 C -0.192 4.192 13 C 0.052 3.948 14 N -0.481 5.481 15 H 0.436 0.564 16 N -0.288 5.288 17 C 0.165 3.835 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.150 4.150 21 C -0.256 4.256 22 S 0.284 5.716 23 C 0.097 3.903 24 C -0.166 4.166 25 C -0.192 4.192 26 C -0.179 4.179 27 H 0.260 0.740 28 H -0.004 1.004 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.172 0.828 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -12.911 0.680 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.247 5.247 11 C -0.012 4.012 12 C -0.204 4.204 13 C -0.094 4.094 14 N -0.190 5.190 15 H 0.280 0.720 16 N -0.113 5.113 17 C -0.002 4.002 18 C -0.262 4.262 19 C -0.159 4.159 20 C -0.181 4.181 21 C -0.394 4.394 22 S 0.551 5.449 23 C -0.031 4.031 24 C -0.186 4.186 25 C -0.229 4.229 26 C -0.216 4.216 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.189 0.811 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.222 -12.285 0.576 13.361 hybrid contribution -0.390 -0.214 -0.284 0.528 sum 4.832 -12.498 0.292 13.403 Atomic orbital electron populations 1.69934 1.05922 1.26679 1.51258 1.24904 0.94732 0.98933 0.95708 0.86703 0.79566 0.83353 0.78651 1.20406 1.21528 1.20204 1.21058 0.93330 0.89766 1.49553 0.92030 1.19804 0.90234 0.87077 0.96262 1.62252 1.28236 1.02161 1.32051 1.20403 0.92773 0.88676 0.99315 1.20221 1.06627 1.01125 0.92472 1.22277 0.94665 0.94824 0.97635 1.46086 1.36795 1.28343 1.07786 0.72040 1.77577 1.22328 1.12743 0.98622 1.19579 0.95093 0.93191 0.92308 1.22154 1.11369 0.98777 0.93883 1.20162 1.04026 1.00564 0.91186 1.19839 1.05666 0.92245 1.00370 1.26319 1.09493 1.01811 1.01752 1.86281 1.61975 0.98561 0.98039 1.21658 0.94435 1.01470 0.85588 1.23184 1.02641 0.98923 0.93868 1.23003 1.02524 0.91113 1.06222 1.22809 1.01138 1.01004 0.96685 0.93013 0.98667 0.94814 0.90850 0.93901 0.81090 0.85206 0.85357 0.82455 0.92946 0.89644 0.87308 0.89659 0.89737 0.89535 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -12.87 8.44 -34.44 -0.29 -13.16 16 8 H 0.06 1.60 7.14 -52.49 -0.37 1.23 16 9 C 0.19 4.47 4.13 -4.98 -0.02 4.45 16 10 N -0.52 -10.15 3.37 -237.52 -0.80 -10.95 16 11 C 0.12 2.02 4.41 -4.97 -0.02 2.00 16 12 C -0.19 -3.06 5.07 -104.70 -0.53 -3.59 16 13 C 0.05 0.67 11.56 -17.27 -0.20 0.47 16 14 N -0.48 -5.93 7.35 30.41 0.22 -5.71 16 15 H 0.44 3.65 8.96 -182.62 -1.64 2.01 16 16 N -0.29 -4.63 12.75 33.37 0.43 -4.20 16 17 C 0.16 2.82 7.02 -82.87 -0.58 2.24 16 18 C -0.14 -2.46 6.25 -36.86 -0.23 -2.69 16 19 C -0.13 -1.97 10.10 -40.90 -0.41 -2.38 16 20 C -0.15 -2.18 10.16 -41.29 -0.42 -2.60 16 21 C -0.26 -3.98 11.22 29.10 0.33 -3.65 16 22 S 0.28 5.17 20.36 -107.50 -2.19 2.98 16 23 C 0.10 1.74 5.34 -3.82 -0.02 1.72 16 24 C -0.17 -2.69 3.96 -90.62 -0.36 -3.05 16 25 C -0.19 -2.43 9.84 -26.69 -0.26 -2.69 16 26 C -0.18 -2.49 10.25 -26.69 -0.27 -2.76 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.00 -0.11 6.13 -51.93 -0.32 -0.43 16 29 H 0.03 0.85 7.56 -51.93 -0.39 0.46 16 30 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 31 H 0.04 0.69 6.34 -51.93 -0.33 0.37 16 32 H 0.17 1.68 6.79 -52.49 -0.36 1.32 16 33 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.05 0.87 7.14 -51.93 -0.37 0.50 16 37 H 0.09 1.72 6.73 -51.93 -0.35 1.37 16 38 H 0.11 2.04 6.30 -51.93 -0.33 1.71 16 39 H 0.09 0.96 6.87 -51.93 -0.36 0.60 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -29.38 355.60 -11.54 -40.92 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.88 Total: 4.53 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.39 Total: -24.23 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.59 Total: -45.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -2.19 Total: 2.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.38 -11.54 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.996 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds