Wall clock time and date at job start Tue Mar 31 2020 11:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99730 * 2 1 4 4 H 1.48499 * 109.47133 * 240.00416 * 3 2 1 5 5 H 1.48504 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47401 * 120.00118 * 3 2 1 7 7 C 1.37874 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99969 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99673 * 170.00681 * 10 9 7 12 12 C 1.50704 * 109.46869 * 199.57963 * 11 10 9 13 13 C 1.35041 * 126.08031 * 258.00359 * 12 11 10 14 14 N 1.35055 * 108.02402 * 179.89286 * 13 12 11 15 15 H 0.96999 * 125.91311 * 180.12131 * 14 13 12 16 16 N 1.40069 * 108.17529 * 0.37016 * 14 13 12 17 17 C 1.31778 * 108.09002 * 359.76998 * 16 14 13 18 18 C 1.47914 * 126.06835 * 180.02562 * 17 16 14 19 19 C 1.34747 * 125.26594 * 324.96211 * 18 17 16 20 20 C 1.38023 * 114.70032 * 179.97438 * 19 18 17 21 21 C 1.33570 * 115.06271 * 359.97438 * 20 19 18 22 22 S 1.75861 * 109.75930 * 359.76014 * 21 20 19 23 23 C 1.46907 * 111.00120 * 293.95401 * 10 9 7 24 24 C 1.52993 * 109.47093 * 294.53980 * 23 10 9 25 25 C 1.53002 * 117.49954 * 245.19871 * 24 23 10 26 26 C 1.53003 * 117.49840 * 176.53915 * 24 23 10 27 27 H 0.97005 * 120.00421 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46727 * 60.00503 * 9 7 2 29 29 H 1.08998 * 109.47202 * 300.00540 * 9 7 2 30 30 H 1.09002 * 109.47085 * 319.57134 * 11 10 9 31 31 H 1.08991 * 109.47656 * 79.58035 * 11 10 9 32 32 H 1.07996 * 125.99009 * 0.04447 * 13 12 11 33 33 H 1.08004 * 122.64591 * 359.97438 * 19 18 17 34 34 H 1.08003 * 122.46733 * 180.02562 * 20 19 18 35 35 H 1.07997 * 125.11850 * 180.02562 * 21 20 19 36 36 H 1.08992 * 109.47127 * 174.53770 * 23 10 9 37 37 H 1.09007 * 109.46598 * 54.54111 * 23 10 9 38 38 H 1.09006 * 115.55665 * 30.87511 * 24 23 10 39 39 H 1.09005 * 117.49561 * 0.02562 * 25 24 23 40 40 H 1.08995 * 117.50061 * 145.02166 * 25 24 23 41 41 H 1.09004 * 117.50294 * 214.97863 * 26 24 23 42 42 H 1.09005 * 117.49792 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5212 -4.8935 0.2375 12 6 2.5213 -5.9196 0.7045 13 6 3.0640 -6.9010 -0.0477 14 7 3.9121 -7.6051 0.7327 15 1 4.4422 -8.3678 0.4531 16 7 3.8895 -7.0468 2.0171 17 6 3.0521 -6.0294 2.0064 18 6 2.7270 -5.1569 3.1557 19 6 2.6474 -5.5586 4.4394 20 6 2.3287 -4.5602 5.3375 21 6 2.1487 -3.3512 4.7991 22 16 2.3930 -3.4327 3.0594 23 6 2.9711 -3.6539 -1.2539 24 6 2.0282 -3.9648 -2.4179 25 6 2.2320 -5.2882 -3.1582 26 6 2.6232 -3.9683 -3.8275 27 1 -0.4851 0.8401 -0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 0.7554 -4.7587 1.0013 31 1 1.0560 -5.2343 -0.6874 32 1 2.8581 -7.0884 -1.0911 33 1 2.8194 -6.5812 4.7416 34 1 2.2327 -4.7430 6.3976 35 1 1.8959 -2.4572 5.3498 36 1 3.7358 -4.4278 -1.1891 37 1 3.4460 -2.6868 -1.4192 38 1 1.0059 -3.6040 -2.3042 39 1 3.0377 -5.9376 -2.8155 40 1 1.3439 -5.7979 -3.5316 41 1 1.9923 -3.6103 -4.6411 42 1 3.6866 -3.7496 -3.9255 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:23 Heat of formation + Delta-G solvation = 126.588714 kcal Electronic energy + Delta-G solvation = -24562.123387 eV Core-core repulsion = 21249.905493 eV Total energy + Delta-G solvation = -3312.217894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10667 -39.41571 -38.35943 -36.56356 -34.59702 -33.24917 -31.88522 -29.55623 -28.95054 -27.81796 -25.35691 -25.26561 -23.30248 -23.11808 -22.36652 -21.29249 -20.53388 -19.59915 -18.59881 -18.14260 -17.63086 -16.87901 -16.74685 -16.21619 -15.92135 -15.66503 -15.19313 -14.99362 -14.66817 -14.23044 -13.89344 -13.82705 -13.65675 -13.38966 -13.24902 -12.97292 -12.86735 -12.67296 -12.57241 -12.40830 -12.36418 -12.21419 -11.76672 -11.65351 -11.26361 -11.11714 -11.03149 -10.74383 -10.60266 -10.44733 -9.59701 -9.17436 -9.10918 -8.71839 -8.06777 -6.12221 -0.03453 0.79589 1.11534 1.39484 1.44486 1.45656 1.52731 1.70280 2.07376 2.23575 2.48191 3.02293 3.26558 3.57164 3.68674 3.93808 4.03176 4.16607 4.24295 4.29848 4.34369 4.43754 4.57798 4.74643 4.75726 4.82228 4.84009 4.91621 4.99287 5.05635 5.11802 5.20045 5.28137 5.34095 5.39481 5.39756 5.53044 5.57446 5.62837 5.70909 5.80080 6.23256 6.47744 6.55319 6.71007 6.83612 7.03776 7.55120 9.03132 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.006558 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.624582 B = 4268.455914 C = 6662.120204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.497 4.497 8 H 0.056 0.944 9 C 0.215 3.785 10 N -0.525 5.525 11 C 0.130 3.870 12 C -0.222 4.222 13 C 0.082 3.918 14 N -0.460 5.460 15 H 0.456 0.544 16 N -0.307 5.307 17 C 0.143 3.857 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.141 4.141 21 C -0.252 4.252 22 S 0.197 5.803 23 C 0.105 3.895 24 C -0.195 4.195 25 C -0.157 4.157 26 C -0.177 4.177 27 H 0.259 0.741 28 H -0.031 1.031 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.210 0.790 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -15.207 0.236 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.089 3.911 10 N -0.247 5.247 11 C 0.001 3.999 12 C -0.234 4.234 13 C -0.067 4.067 14 N -0.170 5.170 15 H 0.304 0.696 16 N -0.133 5.133 17 C -0.022 4.022 18 C -0.267 4.267 19 C -0.158 4.158 20 C -0.171 4.171 21 C -0.389 4.389 22 S 0.463 5.537 23 C -0.023 4.023 24 C -0.215 4.215 25 C -0.193 4.193 26 C -0.215 4.215 27 H 0.068 0.932 28 H -0.013 1.013 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.227 0.773 33 H 0.164 0.836 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.813 -14.619 0.138 16.129 hybrid contribution -0.841 0.359 -0.127 0.923 sum 5.972 -14.260 0.010 15.460 Atomic orbital electron populations 1.70058 1.07298 1.27252 1.52795 1.25629 0.95425 1.02103 0.95723 0.85778 0.78424 0.79643 0.78840 1.19736 1.21348 1.19713 1.21302 0.93107 0.90976 1.48202 0.92614 1.19330 0.90033 0.88112 0.93647 1.62146 1.27241 1.02154 1.33201 1.20207 0.92789 0.87975 0.98964 1.20116 1.07979 1.02383 0.92927 1.22673 0.92573 0.92785 0.98623 1.46110 1.36080 1.28244 1.06587 0.69631 1.77510 1.22429 1.12851 1.00534 1.19691 0.95928 0.93774 0.92772 1.22229 1.11884 0.97617 0.94925 1.20475 1.03010 1.01521 0.90797 1.20193 1.03786 0.91274 1.01860 1.26448 1.09774 1.03130 0.99593 1.86490 1.64399 1.01151 1.01650 1.21520 0.94751 1.00402 0.85646 1.22856 1.00597 1.03308 0.94767 1.23117 1.03526 0.89917 1.02789 1.22898 1.01505 1.02136 0.94935 0.93168 1.01306 0.97399 0.93148 0.92882 0.77324 0.83642 0.81910 0.80734 0.91086 0.92767 0.90705 0.87121 0.88209 0.89312 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.50 -26.89 8.44 25.60 0.22 -26.68 16 8 H 0.06 3.02 7.14 -2.91 -0.02 3.00 16 9 C 0.21 10.71 4.13 85.56 0.35 11.06 16 10 N -0.53 -21.11 3.37 -905.36 -3.05 -24.16 16 11 C 0.13 4.54 4.41 85.56 0.38 4.91 16 12 C -0.22 -6.80 5.07 -19.92 -0.10 -6.90 16 13 C 0.08 1.79 11.56 83.46 0.96 2.75 16 14 N -0.46 -9.71 7.35 -57.69 -0.42 -10.14 16 15 H 0.46 5.71 8.96 -213.34 -1.91 3.80 16 16 N -0.31 -9.28 12.75 -48.35 -0.62 -9.89 16 17 C 0.14 4.82 7.02 42.40 0.30 5.12 16 18 C -0.15 -5.13 6.25 24.03 0.15 -4.98 16 19 C -0.12 -3.77 10.10 21.42 0.22 -3.55 16 20 C -0.14 -3.88 10.16 21.16 0.22 -3.67 16 21 C -0.25 -7.81 11.22 66.76 0.75 -7.06 16 22 S 0.20 7.49 20.36 -56.49 -1.15 6.34 16 23 C 0.11 3.79 5.34 86.30 0.46 4.25 16 24 C -0.20 -6.25 3.96 -10.79 -0.04 -6.29 16 25 C -0.16 -3.43 9.84 30.62 0.30 -3.13 16 26 C -0.18 -4.62 10.25 30.62 0.31 -4.30 16 27 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 28 H -0.03 -1.66 6.13 -2.39 -0.01 -1.68 16 29 H 0.01 0.44 7.56 -2.39 -0.02 0.42 16 30 H 0.05 1.96 7.58 -2.39 -0.02 1.95 16 31 H 0.05 1.71 6.34 -2.39 -0.02 1.69 16 32 H 0.21 2.91 6.79 -2.91 -0.02 2.89 16 33 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.18 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.07 2.25 7.14 -2.39 -0.02 2.24 16 37 H 0.05 2.25 6.73 -2.38 -0.02 2.24 16 38 H 0.07 2.93 6.30 -2.38 -0.02 2.92 16 39 H 0.11 1.89 6.87 -2.38 -0.02 1.87 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -67.30 355.60 1.14 -66.15 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.86 Total: 17.76 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 4.93 Total: -37.52 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -3.80 Total: -98.87 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.15 Total: 6.34 kcal Total: -67.30 1.14 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.742 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds