Wall clock time and date at job start Tue Mar 31 2020 11:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99954 * 2 1 4 4 C 1.53006 * 109.47222 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46708 * 65.00330 * 4 3 2 6 6 C 1.46500 * 120.00199 * 269.99786 * 5 4 3 7 7 C 1.50694 * 109.47003 * 263.55428 * 6 5 4 8 8 H 1.07995 * 120.00257 * 359.97438 * 7 6 5 9 9 C 1.37888 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99832 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47434 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.47116 * 119.99706 * 11 9 7 14 14 H 1.48501 * 109.47371 * 240.00015 * 11 9 7 15 15 C 1.34784 * 119.99686 * 89.99914 * 5 4 3 16 16 O 1.21652 * 120.00039 * 3.84420 * 15 5 4 17 17 C 1.46978 * 119.99743 * 183.84136 * 15 5 4 18 18 O 1.34942 * 125.13243 * 353.59681 * 17 15 5 19 19 C 1.34713 * 110.86490 * 180.02562 * 18 17 15 20 20 C 1.39036 * 133.24628 * 179.97438 * 19 18 17 21 21 C 1.37798 * 119.85292 * 180.02562 * 20 19 18 22 22 C 1.38839 * 120.74492 * 0.02562 * 21 20 19 23 23 C 1.36615 * 120.44502 * 359.97438 * 22 21 20 24 24 C 1.39710 * 119.70968 * 0.02562 * 23 22 21 25 25 C 1.35806 * 125.13151 * 173.62530 * 17 15 5 26 26 C 1.50703 * 126.95874 * 359.97438 * 25 17 15 27 27 H 1.08997 * 109.47415 * 59.99723 * 1 2 3 28 28 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46832 * 299.99118 * 1 2 3 30 30 H 1.09007 * 109.46857 * 60.00668 * 3 2 1 31 31 H 1.08998 * 109.47543 * 300.00654 * 3 2 1 32 32 H 1.09002 * 109.47486 * 305.00891 * 4 3 2 33 33 H 1.09001 * 109.47210 * 185.00467 * 4 3 2 34 34 H 1.08997 * 109.46909 * 23.56009 * 6 5 4 35 35 H 1.09005 * 109.46920 * 143.55703 * 6 5 4 36 36 H 0.97000 * 119.99784 * 180.02562 * 10 9 7 37 37 H 1.07991 * 120.07206 * 0.04828 * 20 19 18 38 38 H 1.07995 * 119.62321 * 180.27745 * 21 20 19 39 39 H 1.07997 * 119.77272 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.14301 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.47033 * 270.00157 * 26 25 17 42 42 H 1.09000 * 109.47072 * 30.00365 * 26 25 17 43 43 H 1.09002 * 109.47064 * 150.00119 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3405 7 6 5.5405 -1.2850 -1.0960 8 1 6.2814 -0.5256 -0.8945 9 6 5.9070 -2.6139 -1.1305 10 7 5.0048 -3.5386 -1.3764 11 14 7.6846 -3.1006 -0.8267 12 1 8.4952 -1.8823 -0.5736 13 1 7.7574 -3.9971 0.3550 14 1 8.2146 -3.8093 -2.0192 15 6 4.2632 1.3332 -2.3201 16 8 4.2233 2.5453 -2.2256 17 6 4.6241 0.7072 -3.6000 18 8 4.8195 -0.6143 -3.7904 19 6 5.1392 -0.8722 -5.0734 20 6 5.4310 -2.0420 -5.7658 21 6 5.7289 -1.9873 -7.1100 22 6 5.7421 -0.7742 -7.7853 23 6 5.4585 0.3882 -7.1260 24 6 5.1540 0.3545 -5.7629 25 6 4.8117 1.3717 -4.7695 26 6 4.6919 2.8566 -4.9972 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.8509 0.5684 0.8426 33 1 3.9785 2.1766 0.0903 34 1 3.4684 -1.3607 -0.5909 35 1 3.8032 -1.2238 -2.3337 36 1 5.2626 -4.4734 -1.4003 37 1 5.4240 -2.9914 -5.2512 38 1 5.9506 -2.8987 -7.6452 39 1 5.9780 -0.7495 -8.8389 40 1 5.4698 1.3290 -7.6561 41 1 3.6669 3.0997 -5.2772 42 1 4.9540 3.3869 -4.0817 43 1 5.3681 3.1572 -5.7975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:40 Heat of formation + Delta-G solvation = -44.723201 kcal Electronic energy + Delta-G solvation = -27445.839605 eV Core-core repulsion = 23651.147447 eV Total energy + Delta-G solvation = -3794.692158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96389 -39.12981 -37.53689 -37.29928 -35.16408 -33.31677 -32.57182 -30.43016 -30.11340 -29.18010 -27.38073 -26.83147 -25.87675 -23.97362 -22.91716 -22.30792 -21.92749 -19.87123 -18.98507 -17.33386 -16.72162 -16.33448 -16.09505 -16.06381 -15.63121 -15.48666 -15.09799 -14.69998 -14.50146 -14.13054 -13.75297 -13.60565 -13.34814 -12.96823 -12.74930 -12.37658 -12.34065 -12.03961 -11.98351 -11.90497 -11.78856 -11.55857 -11.50555 -11.20718 -10.91712 -10.86882 -10.60491 -10.39407 -10.08841 -9.69624 -9.51552 -9.46871 -9.30803 -8.44167 -8.23235 -7.95252 -7.56793 -6.05863 -4.10257 1.02893 1.71978 2.29350 3.15453 3.27106 3.35181 3.39981 3.76389 3.81804 4.03020 4.12152 4.42330 4.82150 4.95207 5.14830 5.28014 5.29577 5.34436 5.38482 5.45567 5.53709 5.60893 5.62288 5.63822 5.68593 5.81226 5.84020 5.94417 5.97343 6.01942 6.26304 6.28305 6.33307 6.54433 6.63336 6.69543 6.75622 6.83955 6.95152 7.42916 7.45899 7.52348 7.70173 7.88690 8.17552 8.20378 8.71737 8.95153 9.53917 11.01553 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.006389 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.735076 B = 4381.470678 C = 6178.669457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.120 3.880 5 N -0.573 5.573 6 C 0.235 3.765 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.591 3.409 16 O -0.554 6.554 17 C 0.003 3.997 18 O -0.123 6.123 19 C 0.068 3.932 20 C -0.100 4.100 21 C -0.099 4.099 22 C -0.148 4.148 23 C -0.069 4.069 24 C -0.142 4.142 25 C -0.121 4.121 26 C -0.084 4.084 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.262 0.738 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 6.639 -6.643 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.003 4.003 5 N -0.301 5.301 6 C 0.116 3.884 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.133 4.133 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.379 3.621 16 O -0.437 6.437 17 C -0.048 4.048 18 O -0.021 6.021 19 C 0.018 3.982 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.342 6.643 -6.329 10.151 hybrid contribution 0.829 -0.374 0.084 0.913 sum -3.514 6.269 -6.245 9.521 Atomic orbital electron populations 1.22687 0.82014 1.02492 0.99194 1.88060 1.18804 1.27323 1.95213 1.23024 0.94976 0.85087 0.99969 1.21452 0.91306 0.99916 0.87665 1.48202 1.61634 1.10608 1.09656 1.19783 0.97485 0.71727 0.99396 1.21426 0.93784 0.92372 1.48967 0.92544 1.24813 0.97188 0.96277 0.95016 1.69947 1.33050 1.00649 1.48971 0.86588 0.85283 0.78604 0.77896 1.19824 1.20925 1.20882 1.16816 0.77753 0.85628 0.81921 1.90708 1.56443 1.12760 1.83743 1.21804 1.05751 0.81695 0.95544 1.84890 1.69562 1.23193 1.24489 1.20002 0.99232 0.95258 0.83672 1.20105 1.02226 0.96015 0.93537 1.20885 0.99671 0.98129 0.93006 1.20636 1.03748 0.92334 0.99873 1.20202 0.98374 0.98472 0.91662 1.19819 1.06909 0.92634 0.94933 1.21184 1.04190 0.96378 0.90663 1.20306 1.01464 0.88974 1.03269 0.94617 0.89803 0.94642 0.92876 0.93322 0.89041 0.88956 0.92972 0.93033 0.92872 0.84642 0.85273 0.85905 0.86053 0.91552 0.89191 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.67 9.65 -35.23 -0.34 -7.01 16 3 C 0.05 0.75 6.28 37.16 0.23 0.99 16 4 C 0.12 2.18 5.81 -4.04 -0.02 2.15 16 5 N -0.57 -12.56 2.44 -176.49 -0.43 -12.99 16 6 C 0.23 5.89 4.53 -5.20 -0.02 5.87 16 7 C -0.53 -14.27 8.40 -34.44 -0.29 -14.56 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 11 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.59 13.01 7.59 -12.72 -0.10 12.91 16 16 O -0.55 -11.98 14.15 5.23 0.07 -11.91 16 17 C 0.00 0.07 6.71 -36.91 -0.25 -0.18 16 18 O -0.12 -2.87 6.41 2.79 0.02 -2.85 16 19 C 0.07 1.39 7.41 -38.35 -0.28 1.11 16 20 C -0.10 -1.78 10.07 -39.45 -0.40 -2.18 16 21 C -0.10 -1.39 10.01 -39.52 -0.40 -1.79 16 22 C -0.15 -1.94 9.98 -39.95 -0.40 -2.34 16 23 C -0.07 -1.01 10.06 -39.62 -0.40 -1.41 16 24 C -0.14 -2.60 6.37 -105.19 -0.67 -3.27 16 25 C -0.12 -2.31 6.39 -102.28 -0.65 -2.96 16 26 C -0.08 -1.31 9.89 36.01 0.36 -0.95 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 33 H 0.09 1.56 7.37 -51.93 -0.38 1.17 16 34 H 0.05 1.39 7.26 -51.93 -0.38 1.02 16 35 H 0.05 1.40 5.36 -51.93 -0.28 1.12 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.52 6.26 -51.93 -0.33 1.19 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -31.09 362.42 -7.75 -38.84 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.98 Total: 1.64 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.27 Total: -3.27 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.31 Total: -37.24 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.25 Total: -21.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.09 -7.75 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.885 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds