Wall clock time and date at job start Tue Mar 31 2020 11:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99954 * 2 1 4 4 C 1.53006 * 109.47222 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46708 * 65.00330 * 4 3 2 6 6 C 1.46500 * 120.00199 * 269.99786 * 5 4 3 7 7 C 1.50694 * 109.47003 * 263.55428 * 6 5 4 8 8 H 1.07995 * 120.00257 * 359.97438 * 7 6 5 9 9 C 1.37888 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99832 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47434 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.47116 * 119.99706 * 11 9 7 14 14 H 1.48501 * 109.47371 * 240.00015 * 11 9 7 15 15 C 1.34784 * 119.99686 * 89.99914 * 5 4 3 16 16 O 1.21652 * 120.00039 * 3.84420 * 15 5 4 17 17 C 1.46978 * 119.99743 * 183.84136 * 15 5 4 18 18 O 1.34942 * 125.13243 * 353.59681 * 17 15 5 19 19 C 1.34713 * 110.86490 * 180.02562 * 18 17 15 20 20 C 1.39036 * 133.24628 * 179.97438 * 19 18 17 21 21 C 1.37798 * 119.85292 * 180.02562 * 20 19 18 22 22 C 1.38839 * 120.74492 * 0.02562 * 21 20 19 23 23 C 1.36615 * 120.44502 * 359.97438 * 22 21 20 24 24 C 1.39710 * 119.70968 * 0.02562 * 23 22 21 25 25 C 1.35806 * 125.13151 * 173.62530 * 17 15 5 26 26 C 1.50703 * 126.95874 * 359.97438 * 25 17 15 27 27 H 1.08997 * 109.47415 * 59.99723 * 1 2 3 28 28 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46832 * 299.99118 * 1 2 3 30 30 H 1.09007 * 109.46857 * 60.00668 * 3 2 1 31 31 H 1.08998 * 109.47543 * 300.00654 * 3 2 1 32 32 H 1.09002 * 109.47486 * 305.00891 * 4 3 2 33 33 H 1.09001 * 109.47210 * 185.00467 * 4 3 2 34 34 H 1.08997 * 109.46909 * 23.56009 * 6 5 4 35 35 H 1.09005 * 109.46920 * 143.55703 * 6 5 4 36 36 H 0.97000 * 119.99784 * 180.02562 * 10 9 7 37 37 H 1.07991 * 120.07206 * 0.04828 * 20 19 18 38 38 H 1.07995 * 119.62321 * 180.27745 * 21 20 19 39 39 H 1.07997 * 119.77272 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.14301 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.47033 * 270.00157 * 26 25 17 42 42 H 1.09000 * 109.47072 * 30.00365 * 26 25 17 43 43 H 1.09002 * 109.47064 * 150.00119 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3405 7 6 5.5405 -1.2850 -1.0960 8 1 6.2814 -0.5256 -0.8945 9 6 5.9070 -2.6139 -1.1305 10 7 5.0048 -3.5386 -1.3764 11 14 7.6846 -3.1006 -0.8267 12 1 8.4952 -1.8823 -0.5736 13 1 7.7574 -3.9971 0.3550 14 1 8.2146 -3.8093 -2.0192 15 6 4.2632 1.3332 -2.3201 16 8 4.2233 2.5453 -2.2256 17 6 4.6241 0.7072 -3.6000 18 8 4.8195 -0.6143 -3.7904 19 6 5.1392 -0.8722 -5.0734 20 6 5.4310 -2.0420 -5.7658 21 6 5.7289 -1.9873 -7.1100 22 6 5.7421 -0.7742 -7.7853 23 6 5.4585 0.3882 -7.1260 24 6 5.1540 0.3545 -5.7629 25 6 4.8117 1.3717 -4.7695 26 6 4.6919 2.8566 -4.9972 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.8509 0.5684 0.8426 33 1 3.9785 2.1766 0.0903 34 1 3.4684 -1.3607 -0.5909 35 1 3.8032 -1.2238 -2.3337 36 1 5.2626 -4.4734 -1.4003 37 1 5.4240 -2.9914 -5.2512 38 1 5.9506 -2.8987 -7.6452 39 1 5.9780 -0.7495 -8.8389 40 1 5.4698 1.3290 -7.6561 41 1 3.6669 3.0997 -5.2772 42 1 4.9540 3.3869 -4.0817 43 1 5.3681 3.1572 -5.7975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:39 Heat of formation + Delta-G solvation = -62.831857 kcal Electronic energy + Delta-G solvation = -27446.624855 eV Core-core repulsion = 23651.147447 eV Total energy + Delta-G solvation = -3795.477408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.41155 -40.73420 -38.81666 -38.63436 -36.85459 -34.79123 -34.54901 -31.87227 -31.38341 -30.53013 -29.14807 -28.29877 -27.13339 -25.39206 -24.84064 -23.63418 -23.30112 -21.25817 -20.53250 -18.95155 -18.57659 -17.78769 -17.63279 -17.36277 -17.22086 -16.79219 -16.55014 -16.41036 -15.99124 -15.56807 -15.22670 -14.96527 -14.71539 -14.39703 -14.26325 -13.97943 -13.77226 -13.55842 -13.38065 -13.22395 -13.09439 -12.99464 -12.82157 -12.78895 -12.72482 -12.47127 -12.20648 -11.95916 -11.77950 -11.68891 -11.07186 -10.83499 -10.63544 -10.52759 -9.65973 -9.52553 -9.03067 -8.16696 -6.28414 -0.35270 0.45812 0.87375 1.33935 1.35683 1.46502 1.71575 2.14190 2.23775 2.42230 2.79076 2.90841 3.13964 3.37435 3.66275 3.84383 4.01805 4.09601 4.15940 4.18932 4.34537 4.37379 4.49085 4.50053 4.51612 4.54860 4.60852 4.72924 4.78733 4.81767 4.83297 4.96204 5.05426 5.05825 5.20360 5.40393 5.43172 5.49495 5.53462 5.65164 5.73913 5.84864 6.08751 6.20225 6.28597 6.41398 6.80135 7.07744 7.39146 8.90154 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009188 B = 0.006389 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.735076 B = 4381.470678 C = 6178.669457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.055 3.945 4 C 0.113 3.887 5 N -0.581 5.581 6 C 0.261 3.739 7 C -0.533 4.533 8 H 0.042 0.958 9 C 0.027 3.973 10 N -0.914 5.914 11 Si 0.947 3.053 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.277 1.277 15 C 0.587 3.413 16 O -0.558 6.558 17 C -0.053 4.053 18 O -0.162 6.162 19 C 0.030 3.970 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.136 4.136 23 C -0.062 4.062 24 C -0.160 4.160 25 C -0.102 4.102 26 C -0.080 4.080 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.118 0.882 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 7.600 -9.253 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.022 4.022 4 C -0.010 4.010 5 N -0.309 5.309 6 C 0.141 3.859 7 C -0.572 4.572 8 H 0.060 0.940 9 C -0.173 4.173 10 N -0.554 5.554 11 Si 0.773 3.227 12 H -0.200 1.200 13 H -0.198 1.198 14 H -0.203 1.203 15 C 0.376 3.624 16 O -0.442 6.442 17 C -0.103 4.103 18 O -0.062 6.062 19 C -0.019 4.019 20 C -0.155 4.155 21 C -0.093 4.093 22 C -0.153 4.153 23 C -0.079 4.079 24 C -0.161 4.161 25 C -0.105 4.105 26 C -0.136 4.136 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.185 0.815 39 H 0.190 0.810 40 H 0.176 0.824 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.626 7.627 -8.930 12.291 hybrid contribution 0.596 -0.687 0.706 1.152 sum -3.029 6.940 -8.224 11.179 Atomic orbital electron populations 1.22876 0.79850 1.03329 1.00748 1.88009 1.21336 1.28452 1.95516 1.22964 0.93107 0.84799 1.01358 1.21690 0.93342 0.99956 0.85975 1.48155 1.62281 1.09382 1.11093 1.19193 0.95860 0.73657 0.97202 1.21519 0.94412 0.92335 1.48911 0.94013 1.25501 1.00853 0.96204 0.94731 1.70042 1.34776 1.00960 1.49578 0.85681 0.80752 0.78162 0.78150 1.20044 1.19774 1.20291 1.16959 0.77498 0.85717 0.82209 1.90670 1.56946 1.12482 1.84056 1.21940 1.09775 0.81997 0.96554 1.84760 1.71024 1.24042 1.26419 1.20620 1.00655 0.97339 0.83289 1.20308 1.05058 0.94767 0.95384 1.21406 0.96193 1.00492 0.91200 1.21215 1.01254 0.90917 1.01935 1.20716 0.96431 1.00899 0.89903 1.20082 1.08281 0.91204 0.96503 1.21724 1.00908 0.98007 0.89891 1.20401 1.03244 0.86326 1.03679 0.94040 0.89457 0.91974 0.89130 0.93952 0.89662 0.87756 0.95304 0.95276 0.92590 0.86378 0.81529 0.80992 0.82389 0.89897 0.90726 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.13 9.65 -148.98 -1.44 -16.57 16 3 C 0.05 1.77 6.28 71.98 0.45 2.22 16 4 C 0.11 4.25 5.81 86.38 0.50 4.75 16 5 N -0.58 -27.03 2.44 -830.52 -2.02 -29.06 16 6 C 0.26 14.06 4.53 85.63 0.39 14.45 16 7 C -0.53 -30.50 8.40 25.60 0.22 -30.28 16 8 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.03 1.55 5.46 84.66 0.46 2.01 16 10 N -0.91 -53.63 13.29 21.45 0.28 -53.34 16 11 Si 0.95 44.97 29.54 68.60 2.03 47.00 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 C 0.59 27.21 7.59 86.53 0.66 27.87 16 16 O -0.56 -24.86 14.15 -4.20 -0.06 -24.92 16 17 C -0.05 -2.43 6.71 24.00 0.16 -2.27 16 18 O -0.16 -8.11 6.41 -12.93 -0.08 -8.19 16 19 C 0.03 1.27 7.41 23.07 0.17 1.44 16 20 C -0.14 -4.94 10.07 22.36 0.23 -4.72 16 21 C -0.08 -1.90 10.01 22.31 0.22 -1.67 16 22 C -0.14 -2.90 9.98 22.03 0.22 -2.68 16 23 C -0.06 -1.58 10.06 22.25 0.22 -1.35 16 24 C -0.16 -5.74 6.37 -20.23 -0.13 -5.87 16 25 C -0.10 -3.91 6.39 -18.35 -0.12 -4.03 16 26 C -0.08 -2.38 9.89 71.24 0.70 -1.68 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 3.26 8.07 -2.39 -0.02 3.24 16 33 H 0.10 3.61 7.37 -2.39 -0.02 3.59 16 34 H 0.03 1.66 7.26 -2.39 -0.02 1.64 16 35 H 0.03 1.74 5.36 -2.38 -0.01 1.72 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 37 H 0.12 4.51 8.06 -2.92 -0.02 4.48 16 38 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.48 6.26 -2.39 -0.01 2.46 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.86 362.42 5.33 -67.54 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.02 Total: 17.38 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.61 Total: 0.16 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.74 Total: -82.40 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.58 Total: -49.68 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.86 5.33 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.705 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds