Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38390 * 119.92494 * 2 1 4 4 C 1.38337 * 120.29100 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14476 * 0.02562 * 4 3 2 6 6 C 1.39554 * 119.85520 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.14652 * 180.02562 * 6 5 4 8 8 N 1.31267 * 126.46320 * 340.63954 * 7 6 5 9 9 N 1.28518 * 109.96131 * 179.73829 * 8 7 6 10 10 C 1.31448 * 110.07405 * 0.02562 * 9 8 7 11 11 S 1.76206 * 126.37710 * 180.02562 * 10 9 8 12 12 C 1.80996 * 99.99947 * 359.97282 * 11 10 9 13 13 C 1.53006 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47252 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46981 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00119 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47117 * 60.00038 * 19 17 15 21 21 H 1.48502 * 109.47021 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47053 * 300.00329 * 19 17 15 23 23 N 1.36555 * 107.23750 * 359.97438 * 10 9 8 24 24 C 1.46504 * 127.17238 * 180.02562 * 23 10 9 25 25 C 1.37930 * 119.93075 * 180.30167 * 2 1 3 26 26 H 1.09001 * 109.46971 * 89.99706 * 1 2 3 27 27 H 1.08996 * 109.46572 * 209.99835 * 1 2 3 28 28 H 1.08998 * 109.47200 * 330.00040 * 1 2 3 29 29 H 1.08000 * 119.85312 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.92494 * 180.02562 * 4 3 2 31 31 H 1.08007 * 120.07497 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47302 * 300.00159 * 12 11 10 33 33 H 1.08998 * 109.47549 * 60.00181 * 12 11 10 34 34 H 1.09001 * 109.46731 * 300.00079 * 13 12 11 35 35 H 1.08998 * 109.47033 * 59.99434 * 13 12 11 36 36 H 1.08999 * 109.47215 * 299.99034 * 14 13 12 37 37 H 1.08994 * 109.47388 * 59.99745 * 14 13 12 38 38 H 0.97001 * 119.99600 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47152 * 263.57960 * 24 23 10 40 40 H 1.09004 * 109.46708 * 23.57241 * 24 23 10 41 41 H 1.08997 * 109.47270 * 143.56952 * 24 23 10 42 42 H 1.08004 * 120.07392 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0195 -0.0016 6 6 3.5912 -1.1935 -0.0016 7 6 4.3353 -2.4710 -0.0022 8 7 5.5885 -2.6437 -0.3527 9 7 5.9127 -3.8809 -0.2269 10 6 4.8855 -4.5742 0.2114 11 16 4.8552 -6.3059 0.5355 12 6 6.5570 -6.7378 0.0958 13 6 6.7721 -8.2385 0.3025 14 6 8.2108 -8.6034 -0.0686 15 6 8.4227 -10.0814 0.1356 16 1 7.6124 -10.6986 0.4946 17 6 9.6511 -10.6457 -0.1358 18 7 10.6380 -9.8940 -0.5724 19 14 9.9140 -12.4776 0.1180 20 1 8.9723 -13.2368 -0.7434 21 1 11.3104 -12.8318 -0.2423 22 1 9.6685 -12.8203 1.5418 23 7 3.8467 -3.7021 0.3699 24 6 2.4938 -4.0127 0.8386 25 6 2.1952 -1.1953 -0.0063 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6538 2.1326 -0.0004 30 1 4.1135 2.1477 -0.0001 31 1 5.3613 0.0277 -0.0016 32 1 6.7374 -6.4858 -0.9492 33 1 7.2482 -6.1809 0.7284 34 1 6.5916 -8.4908 1.3474 35 1 6.0809 -8.7951 -0.3303 36 1 8.3917 -8.3511 -1.1134 37 1 8.9017 -8.0467 0.5646 38 1 11.5023 -10.2909 -0.7630 39 1 1.8357 -4.1537 -0.0188 40 1 2.5162 -4.9258 1.4335 41 1 2.1232 -3.1898 1.4498 42 1 1.6553 -2.1307 -0.0108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120972578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 81.850962 kcal Electronic energy + Delta-G solvation = -22307.807023 eV Core-core repulsion = 18993.649155 eV Total energy + Delta-G solvation = -3314.157868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.89157 -39.61103 -35.33385 -34.49870 -33.64957 -32.21413 -32.05774 -29.67924 -28.08522 -27.49152 -27.26324 -24.06917 -23.29623 -23.01837 -22.00490 -20.59568 -20.26368 -17.90177 -16.94153 -16.62627 -16.55009 -16.17204 -15.81341 -15.34250 -14.64874 -14.63271 -14.26854 -14.21192 -13.85032 -13.75927 -13.71542 -13.17129 -12.68576 -12.58924 -12.56098 -11.90582 -11.88456 -11.78465 -11.71370 -11.44304 -11.17065 -10.88785 -10.73856 -10.57596 -10.49292 -10.37405 -10.18510 -9.83376 -9.38794 -9.22887 -9.13706 -8.92439 -8.35944 -7.54288 -6.00461 -4.03890 0.47159 0.94827 1.09374 1.73437 2.25199 2.44172 2.71251 3.33692 3.38282 3.40430 3.42166 3.85932 4.21552 4.36128 4.42967 4.45430 4.63704 4.66827 4.83103 4.90703 4.96930 5.00556 5.13721 5.14711 5.34561 5.34994 5.44277 5.49492 5.50025 5.59115 5.70510 5.76644 6.02150 6.10006 6.11394 6.12358 6.45283 6.45808 6.54373 6.63494 6.95095 7.63950 7.75321 7.97662 8.37607 8.51734 9.02130 9.60109 11.10607 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.038812 B = 0.002044 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.250997 B =13694.940267 C =14338.341930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.004 4.004 7 C 0.208 3.792 8 N -0.265 5.265 9 N -0.286 5.286 10 C 0.172 3.828 11 S -0.023 6.023 12 C -0.087 4.087 13 C -0.097 4.097 14 C 0.029 3.971 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.464 5.464 24 C 0.068 3.932 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.423 21.814 3.044 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.102 4.102 6 C -0.007 4.007 7 C -0.058 4.058 8 N -0.106 5.106 9 N -0.130 5.130 10 C -0.201 4.201 11 S 0.208 5.792 12 C -0.236 4.236 13 C -0.137 4.137 14 C -0.010 4.010 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.158 5.158 24 C -0.075 4.075 25 C -0.136 4.136 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.730 21.383 2.912 31.342 hybrid contribution -0.046 -0.496 0.072 0.503 sum -22.776 20.887 2.984 31.047 Atomic orbital electron populations 1.20806 0.90690 1.03004 1.02635 1.19789 0.96272 0.92635 0.99765 1.21205 0.94339 0.97607 0.99797 1.21126 0.94143 0.98008 0.99702 1.21238 1.00927 0.90553 0.97487 1.17438 0.91829 0.88243 1.03146 1.22886 0.92343 0.86122 1.04421 1.74293 1.08747 1.10053 1.17497 1.74808 1.21813 0.97833 1.18584 1.27098 0.87288 1.00162 1.05559 1.85485 1.22246 0.88426 1.83084 1.23944 0.90695 1.02891 1.06030 1.21561 1.02166 0.88490 1.01501 1.19085 0.88160 0.96455 0.97278 1.21152 0.96933 0.93401 1.44710 0.92593 1.25025 0.96119 0.98081 0.95197 1.69960 1.02663 1.35490 1.45056 0.86628 0.77142 0.85425 0.78624 1.20223 1.21270 1.20228 1.46309 1.12021 1.06694 1.50788 1.22332 0.79566 1.04207 1.01365 1.21256 0.92518 0.98507 1.01310 0.90907 0.91450 0.91233 0.85640 0.85133 0.84546 0.88740 0.88747 0.92184 0.92175 0.96088 0.96090 0.92845 0.89535 0.88318 0.88647 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.01 36.01 0.36 -0.13 16 2 C -0.08 -0.58 5.87 -104.68 -0.61 -1.20 16 3 C -0.11 -0.74 9.69 -39.49 -0.38 -1.12 16 4 C -0.11 -0.84 10.03 -39.64 -0.40 -1.24 16 5 C -0.08 -0.82 9.70 -39.19 -0.38 -1.20 16 6 C 0.00 -0.04 5.87 -104.97 -0.62 -0.66 16 7 C 0.21 2.92 7.69 -153.75 -1.18 1.74 16 8 N -0.26 -4.60 12.02 32.59 0.39 -4.21 16 9 N -0.29 -5.30 11.59 30.71 0.36 -4.94 16 10 C 0.17 2.73 8.07 -88.18 -0.71 2.02 16 11 S -0.02 -0.33 21.67 -107.50 -2.33 -2.66 16 12 C -0.09 -1.55 5.23 37.16 0.19 -1.35 16 13 C -0.10 -1.95 5.16 -26.73 -0.14 -2.09 16 14 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 15 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 N -0.46 -5.98 3.24 -121.45 -0.39 -6.38 16 24 C 0.07 0.52 9.31 59.85 0.56 1.08 16 25 C -0.12 -0.97 8.37 -39.19 -0.33 -1.29 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 28 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 30 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 1.41 7.98 -52.48 -0.42 0.99 16 32 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.09 0.50 7.72 -51.93 -0.40 0.10 16 40 H 0.10 0.69 7.67 -51.93 -0.40 0.29 16 41 H 0.10 0.54 6.65 -51.93 -0.35 0.20 16 42 H 0.13 0.83 5.06 -52.48 -0.27 0.57 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -33.74 367.61 -10.92 -44.66 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.01 Total: -4.15 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -4.19 Total: -18.28 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 1.09 Total: -41.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.33 Total: -2.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.74 -10.92 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120972578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.509 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds