Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38390 * 119.92494 * 2 1 4 4 C 1.38337 * 120.29100 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14476 * 0.02562 * 4 3 2 6 6 C 1.39554 * 119.85520 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.14652 * 180.02562 * 6 5 4 8 8 N 1.31267 * 126.46320 * 340.63954 * 7 6 5 9 9 N 1.28518 * 109.96131 * 179.73829 * 8 7 6 10 10 C 1.31448 * 110.07405 * 0.02562 * 9 8 7 11 11 S 1.76206 * 126.37710 * 180.02562 * 10 9 8 12 12 C 1.80996 * 99.99947 * 359.97282 * 11 10 9 13 13 C 1.53006 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47252 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46981 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00119 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47117 * 60.00038 * 19 17 15 21 21 H 1.48502 * 109.47021 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47053 * 300.00329 * 19 17 15 23 23 N 1.36555 * 107.23750 * 359.97438 * 10 9 8 24 24 C 1.46504 * 127.17238 * 180.02562 * 23 10 9 25 25 C 1.37930 * 119.93075 * 180.30167 * 2 1 3 26 26 H 1.09001 * 109.46971 * 89.99706 * 1 2 3 27 27 H 1.08996 * 109.46572 * 209.99835 * 1 2 3 28 28 H 1.08998 * 109.47200 * 330.00040 * 1 2 3 29 29 H 1.08000 * 119.85312 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.92494 * 180.02562 * 4 3 2 31 31 H 1.08007 * 120.07497 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47302 * 300.00159 * 12 11 10 33 33 H 1.08998 * 109.47549 * 60.00181 * 12 11 10 34 34 H 1.09001 * 109.46731 * 300.00079 * 13 12 11 35 35 H 1.08998 * 109.47033 * 59.99434 * 13 12 11 36 36 H 1.08999 * 109.47215 * 299.99034 * 14 13 12 37 37 H 1.08994 * 109.47388 * 59.99745 * 14 13 12 38 38 H 0.97001 * 119.99600 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47152 * 263.57960 * 24 23 10 40 40 H 1.09004 * 109.46708 * 23.57241 * 24 23 10 41 41 H 1.08997 * 109.47270 * 143.56952 * 24 23 10 42 42 H 1.08004 * 120.07392 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0195 -0.0016 6 6 3.5912 -1.1935 -0.0016 7 6 4.3353 -2.4710 -0.0022 8 7 5.5885 -2.6437 -0.3527 9 7 5.9127 -3.8809 -0.2269 10 6 4.8855 -4.5742 0.2114 11 16 4.8552 -6.3059 0.5355 12 6 6.5570 -6.7378 0.0958 13 6 6.7721 -8.2385 0.3025 14 6 8.2108 -8.6034 -0.0686 15 6 8.4227 -10.0814 0.1356 16 1 7.6124 -10.6986 0.4946 17 6 9.6511 -10.6457 -0.1358 18 7 10.6380 -9.8940 -0.5724 19 14 9.9140 -12.4776 0.1180 20 1 8.9723 -13.2368 -0.7434 21 1 11.3104 -12.8318 -0.2423 22 1 9.6685 -12.8203 1.5418 23 7 3.8467 -3.7021 0.3699 24 6 2.4938 -4.0127 0.8386 25 6 2.1952 -1.1953 -0.0063 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6538 2.1326 -0.0004 30 1 4.1135 2.1477 -0.0001 31 1 5.3613 0.0277 -0.0016 32 1 6.7374 -6.4858 -0.9492 33 1 7.2482 -6.1809 0.7284 34 1 6.5916 -8.4908 1.3474 35 1 6.0809 -8.7951 -0.3303 36 1 8.3917 -8.3511 -1.1134 37 1 8.9017 -8.0467 0.5646 38 1 11.5023 -10.2909 -0.7630 39 1 1.8357 -4.1537 -0.0188 40 1 2.5162 -4.9258 1.4335 41 1 2.1232 -3.1898 1.4498 42 1 1.6553 -2.1307 -0.0108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120972578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 64.666556 kcal Electronic energy + Delta-G solvation = -22308.552195 eV Core-core repulsion = 18993.649155 eV Total energy + Delta-G solvation = -3314.903040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.99189 -40.23044 -36.48906 -36.20506 -34.30242 -34.08087 -32.91727 -30.66555 -29.41878 -28.85044 -27.74523 -25.54972 -24.55875 -24.05066 -22.85854 -22.02593 -21.38093 -18.97138 -18.44125 -17.65266 -17.59408 -17.36922 -16.62910 -16.55367 -16.25691 -16.02668 -15.46035 -14.70634 -14.67060 -14.53164 -14.48180 -14.29207 -13.77571 -13.72840 -13.70354 -13.12057 -13.10135 -13.00281 -12.75713 -12.72977 -12.45182 -12.35082 -12.14247 -11.91979 -11.74920 -11.55827 -11.49479 -11.32011 -11.30400 -11.15116 -10.55100 -9.88919 -9.64616 -8.71032 -8.19223 -6.31252 -0.31221 -0.10792 0.35305 0.74302 0.92491 1.41727 1.45177 1.46329 1.53091 1.62738 2.42220 2.75192 3.03653 3.14126 3.49013 3.71008 3.90330 3.95064 3.98494 4.01853 4.14351 4.16033 4.28957 4.36875 4.42612 4.48744 4.51042 4.73997 4.74931 4.76502 4.88438 4.90987 4.95812 4.96441 5.12257 5.30022 5.38908 5.40874 5.49008 5.54865 5.62168 5.66281 5.82575 5.94106 6.20723 6.85124 7.36622 7.38103 8.92519 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.038812 B = 0.002044 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.250997 B =13694.940267 C =14338.341930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.103 4.103 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.035 4.035 7 C 0.224 3.776 8 N -0.314 5.314 9 N -0.331 5.331 10 C 0.152 3.848 11 S 0.039 5.961 12 C -0.091 4.091 13 C -0.081 4.081 14 C 0.030 3.970 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.265 1.265 23 N -0.458 5.458 24 C 0.054 3.946 25 C -0.113 4.113 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.070 0.930 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.401 22.201 3.923 35.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.038 4.038 7 C -0.043 4.043 8 N -0.155 5.155 9 N -0.176 5.176 10 C -0.223 4.223 11 S 0.269 5.731 12 C -0.241 4.241 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.190 1.190 23 N -0.151 5.151 24 C -0.086 4.086 25 C -0.133 4.133 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.743 21.774 3.801 34.695 hybrid contribution 1.042 -0.393 -0.197 1.131 sum -25.701 21.380 3.604 33.625 Atomic orbital electron populations 1.20882 0.88373 1.04340 1.03461 1.20181 0.97892 0.92062 0.98343 1.21635 0.93968 0.98947 0.97628 1.21383 0.94917 0.97790 0.98977 1.21277 1.00464 0.91571 0.98754 1.17590 0.93011 0.86958 1.06193 1.23460 0.91599 0.87429 1.01821 1.74182 1.11119 1.09901 1.20252 1.74678 1.23838 0.98791 1.20252 1.27205 0.88003 1.00829 1.06239 1.84984 1.17823 0.87473 1.82831 1.23608 0.93949 1.01344 1.05153 1.21243 0.98656 0.90082 1.02071 1.18969 0.91381 0.95533 0.95067 1.21637 0.97441 0.94625 1.44383 0.91481 1.26040 0.95847 1.03455 0.94773 1.70115 1.03220 1.37830 1.46257 0.85449 0.77147 0.78993 0.79149 1.18969 1.21106 1.18990 1.46561 1.13062 1.05613 1.49882 1.22818 0.77274 1.05619 1.02903 1.21471 0.91240 1.00109 1.00467 0.90189 0.90356 0.89802 0.82652 0.83059 0.86305 0.90035 0.90051 0.91158 0.91135 0.98797 0.98802 0.92791 0.87066 0.87406 0.86337 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.01 71.24 0.71 0.22 16 2 C -0.08 -0.89 5.87 -19.90 -0.12 -1.00 16 3 C -0.10 -1.04 9.69 22.33 0.22 -0.82 16 4 C -0.11 -1.51 10.03 22.23 0.22 -1.29 16 5 C -0.10 -2.03 9.70 22.53 0.22 -1.81 16 6 C -0.03 -0.75 5.87 -20.09 -0.12 -0.87 16 7 C 0.22 6.42 7.69 136.20 1.05 7.47 16 8 N -0.31 -11.61 12.02 -50.79 -0.61 -12.22 16 9 N -0.33 -12.99 11.59 -56.75 -0.66 -13.65 16 10 C 0.15 4.89 8.07 179.50 1.45 6.34 16 11 S 0.04 1.14 21.67 -56.49 -1.22 -0.09 16 12 C -0.09 -3.37 5.23 71.98 0.38 -3.00 16 13 C -0.08 -3.30 5.16 30.59 0.16 -3.14 16 14 C 0.03 1.58 4.97 29.85 0.15 1.73 16 15 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 18 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 19 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 N -0.46 -11.52 3.24 -538.16 -1.74 -13.26 16 24 C 0.05 0.68 9.31 127.77 1.19 1.87 16 25 C -0.11 -1.62 8.37 22.53 0.19 -1.43 16 26 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16 28 H 0.08 0.16 8.08 -2.39 -0.02 0.14 16 29 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 30 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.12 2.71 7.98 -2.91 -0.02 2.69 16 32 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.08 3.19 8.14 -2.40 -0.02 3.17 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.11 0.90 7.72 -2.39 -0.02 0.88 16 40 H 0.11 1.20 7.67 -2.38 -0.02 1.18 16 41 H 0.12 0.97 6.65 -2.39 -0.02 0.95 16 42 H 0.14 1.42 5.06 -2.91 -0.01 1.41 16 Total: -1.00 -77.31 367.61 5.48 -71.82 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.02 Total: 4.72 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 6.39 Total: -26.13 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -2.72 Total: -96.81 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -1.22 Total: -0.09 kcal Total: -77.31 5.48 -71.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120972578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.491 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds