Wall clock time and date at job start Tue Mar 31 2020 10:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48497 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46924 * 299.99339 * 3 2 1 6 6 H 1.48501 * 109.47456 * 59.99872 * 3 2 1 7 7 C 1.38696 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00097 * 180.02562 * 7 2 1 9 9 O 1.34821 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.35519 * 116.99877 * 185.81875 * 9 7 2 11 11 C 1.38837 * 120.16157 * 6.38337 * 10 9 7 12 12 C 1.38019 * 120.07188 * 180.02562 * 11 10 9 13 13 C 1.38578 * 120.40210 * 359.97438 * 12 11 10 14 14 C 1.37823 * 120.32136 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.92247 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.19475 * 179.97438 * 15 14 13 17 17 O 1.21598 * 119.99637 * 135.29984 * 16 15 14 18 18 N 1.34778 * 120.00353 * 315.29777 * 16 15 14 19 19 C 1.47124 * 121.04424 * 174.23035 * 18 16 15 20 20 C 1.53221 * 108.71703 * 127.81387 * 19 18 16 21 21 O 1.43100 * 109.34425 * 54.06745 * 20 19 18 22 22 C 1.42584 * 113.95541 * 299.89061 * 21 20 19 23 23 C 1.53374 * 113.65774 * 287.42773 * 22 21 20 24 24 C 1.53848 * 86.95852 * 219.93461 * 23 22 21 25 25 C 1.53345 * 113.71613 * 189.35640 * 22 21 20 26 26 C 1.47323 * 121.04111 * 353.94508 * 18 16 15 27 27 H 0.96992 * 119.99913 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.96364 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.80113 * 180.27381 * 12 11 10 30 30 H 1.08005 * 119.83438 * 179.97438 * 13 12 11 31 31 H 1.08005 * 120.03614 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.59808 * 247.58559 * 19 18 16 33 33 H 1.09007 * 109.59894 * 8.04651 * 19 18 16 34 34 H 1.09003 * 109.49682 * 174.02818 * 20 19 18 35 35 H 1.09000 * 109.49551 * 294.08634 * 20 19 18 36 36 H 1.08997 * 113.63538 * 334.45245 * 23 22 21 37 37 H 1.08996 * 113.62882 * 105.41483 * 23 22 21 38 38 H 1.09002 * 113.60294 * 270.55372 * 24 23 22 39 39 H 1.08997 * 113.60023 * 139.69634 * 24 23 22 40 40 H 1.08996 * 113.63737 * 254.52978 * 25 22 21 41 41 H 1.09007 * 113.63161 * 25.48930 * 25 22 21 42 42 H 1.08996 * 109.74772 * 348.16959 * 26 18 16 43 43 H 1.09005 * 109.74090 * 108.89258 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0673 -3.5021 0.1235 11 6 3.4307 -3.4276 0.3747 12 6 4.1752 -4.5831 0.4991 13 6 3.5704 -5.8238 0.3752 14 6 2.2181 -5.9168 0.1259 15 6 1.4520 -4.7562 -0.0035 16 6 0.0041 -4.8488 -0.2710 17 8 -0.7742 -4.1473 0.3460 18 7 -0.4560 -5.7110 -1.1992 19 6 -1.8997 -5.9138 -1.3968 20 6 -2.2232 -5.7291 -2.8831 21 8 -1.3860 -6.5902 -3.6611 22 6 0.0088 -6.3418 -3.4999 23 6 0.4851 -5.0479 -4.1717 24 6 1.7424 -5.8272 -4.5947 25 6 0.8903 -7.1044 -4.4963 26 6 0.4710 -6.4751 -2.0520 27 1 -0.4849 0.8400 -0.0004 28 1 3.9092 -2.4644 0.4729 29 1 5.2346 -4.5201 0.6989 30 1 4.1618 -6.7221 0.4738 31 1 1.7515 -6.8862 0.0298 32 1 -2.1732 -6.9221 -1.0857 33 1 -2.4555 -5.1838 -0.8082 34 1 -3.2688 -5.9800 -3.0617 35 1 -2.0441 -4.6924 -3.1682 36 1 -0.1380 -4.7356 -5.0097 37 1 0.6877 -4.2397 -3.4689 38 1 2.5495 -5.7835 -3.8634 39 1 2.0754 -5.6016 -5.6077 40 1 1.4187 -7.9492 -4.0548 41 1 0.3792 -7.3612 -5.4242 42 1 1.4798 -6.0751 -1.9501 43 1 0.4593 -7.5252 -1.7598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127536913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:13 Heat of formation + Delta-G solvation = -42.991878 kcal Electronic energy + Delta-G solvation = -27842.254806 eV Core-core repulsion = 24047.637724 eV Total energy + Delta-G solvation = -3794.617082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74044 -39.36688 -38.02201 -36.49953 -36.18292 -34.35543 -32.39923 -31.06615 -29.50990 -29.02043 -26.95066 -25.80989 -25.46682 -24.18609 -23.28434 -21.84460 -21.38020 -19.42611 -18.58586 -18.06982 -17.46406 -16.68219 -16.45686 -15.75682 -15.40994 -14.92689 -14.83712 -14.61207 -14.51273 -14.09603 -14.04464 -13.69140 -13.61146 -13.17000 -12.78120 -12.72126 -12.46345 -12.32497 -12.02228 -11.76632 -11.45223 -11.40048 -11.20786 -11.13201 -10.96352 -10.86147 -10.79768 -10.68735 -10.48000 -10.21119 -9.68215 -9.66927 -9.05676 -8.93452 -8.30852 -8.18408 -7.38558 -6.50928 -4.11591 1.72988 2.23996 3.08038 3.09095 3.14952 3.21167 3.51529 3.73322 3.88793 4.45149 4.53591 4.56791 4.71955 4.81395 4.99953 5.03057 5.07677 5.13970 5.29959 5.39814 5.44436 5.48835 5.58502 5.63427 5.68716 5.72579 5.78112 5.83859 5.89173 5.95806 6.02192 6.11046 6.14463 6.21682 6.32476 6.50759 6.57849 6.79671 6.90877 6.99812 7.19261 7.22809 7.25554 7.62446 7.79379 7.90808 8.85143 8.90950 9.59305 10.64127 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.004981 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.694140 B = 5620.005677 C = 6227.493381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.401 4.401 8 H 0.095 0.905 9 O -0.144 6.144 10 C 0.189 3.811 11 C -0.234 4.234 12 C -0.053 4.053 13 C -0.225 4.225 14 C -0.043 4.043 15 C -0.221 4.221 16 C 0.576 3.424 17 O -0.511 6.511 18 N -0.621 5.621 19 C 0.080 3.920 20 C 0.048 3.952 21 O -0.368 6.368 22 C 0.076 3.924 23 C -0.161 4.161 24 C -0.139 4.139 25 C -0.115 4.115 26 C 0.106 3.894 27 H 0.272 0.728 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -12.791 -7.306 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.043 6.043 10 C 0.131 3.869 11 C -0.253 4.253 12 C -0.072 4.072 13 C -0.244 4.244 14 C -0.062 4.062 15 C -0.226 4.226 16 C 0.366 3.634 17 O -0.385 6.385 18 N -0.357 5.357 19 C -0.042 4.042 20 C -0.029 4.029 21 O -0.287 6.287 22 C 0.035 3.965 23 C -0.199 4.199 24 C -0.176 4.176 25 C -0.153 4.153 26 C -0.018 4.018 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.096 -12.265 -7.078 14.315 hybrid contribution 0.566 0.999 0.236 1.172 sum 2.662 -11.266 -6.841 13.446 Atomic orbital electron populations 1.70100 1.06018 1.27773 1.43358 1.25380 0.95823 0.98989 0.96138 0.85650 0.79185 0.80212 0.78403 1.18937 1.20010 1.19958 1.21472 0.91854 0.80799 1.53501 0.88786 1.84068 1.34018 1.11326 1.74930 1.19205 0.90045 0.87021 0.90648 1.21155 0.93887 0.99357 1.10924 1.20903 0.98601 0.92249 0.95406 1.20481 0.94556 0.96994 1.12387 1.20793 0.93592 0.95703 0.96102 1.18698 0.92802 0.92029 1.19031 1.18246 0.88435 0.77981 0.78732 1.90822 1.57822 1.40743 1.49160 1.47998 1.05915 1.44260 1.37562 1.22123 0.82493 1.02446 0.97186 1.22931 0.94801 0.94992 0.90188 1.87896 1.15581 1.58909 1.66302 1.23018 0.81860 0.97249 0.94334 1.23465 0.97636 0.97655 1.01115 1.22745 0.96754 0.95886 1.02264 1.22952 0.96051 0.97343 0.98954 1.22080 0.95337 0.96429 0.87920 0.91837 0.85015 0.87092 0.87102 0.86720 0.91323 0.88023 0.88060 0.92359 0.89534 0.90509 0.89510 0.90767 0.90585 0.89059 0.87515 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.40 -11.14 9.43 30.90 0.29 -10.84 16 8 H 0.09 2.38 5.32 -52.49 -0.28 2.10 16 9 O -0.14 -4.17 8.68 -12.18 -0.11 -4.27 16 10 C 0.19 4.59 6.63 -38.60 -0.26 4.33 16 11 C -0.23 -4.90 9.12 -39.44 -0.36 -5.26 16 12 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.57 10.02 -39.61 -0.40 -3.96 16 14 C -0.04 -0.74 7.57 -39.20 -0.30 -1.03 16 15 C -0.22 -4.75 4.94 -104.81 -0.52 -5.26 16 16 C 0.58 12.83 7.05 -12.47 -0.09 12.74 16 17 O -0.51 -13.79 15.81 -7.68 -0.12 -13.91 16 18 N -0.62 -10.92 3.03 -173.87 -0.53 -11.45 16 19 C 0.08 1.24 6.61 -3.59 -0.02 1.22 16 20 C 0.05 0.67 6.88 37.27 0.26 0.92 16 21 O -0.37 -5.24 10.52 -35.23 -0.37 -5.61 16 22 C 0.08 1.02 1.25 -90.47 -0.11 0.91 16 23 C -0.16 -2.28 6.90 -26.10 -0.18 -2.46 16 24 C -0.14 -1.57 7.73 -25.85 -0.20 -1.77 16 25 C -0.12 -1.23 7.50 -26.11 -0.20 -1.42 16 26 C 0.11 1.51 4.13 -3.81 -0.02 1.50 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.13 2.74 5.73 -52.48 -0.30 2.44 16 29 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.11 1.65 7.01 -52.48 -0.37 1.28 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.74 7.05 -51.93 -0.37 1.37 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.90 7.77 -51.93 -0.40 0.50 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.11 1.58 4.58 -51.93 -0.24 1.34 16 43 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -33.85 348.38 -8.43 -42.28 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.71 Total: 7.30 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.59 Total: -10.59 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.23 Total: -35.75 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.60 Total: -23.79 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.85 -8.43 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127536913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.710 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds