Wall clock time and date at job start Tue Mar 31 2020 10:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48497 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46924 * 299.99339 * 3 2 1 6 6 H 1.48501 * 109.47456 * 59.99872 * 3 2 1 7 7 C 1.38696 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00097 * 180.02562 * 7 2 1 9 9 O 1.34821 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.35519 * 116.99877 * 185.81875 * 9 7 2 11 11 C 1.38837 * 120.16157 * 6.38337 * 10 9 7 12 12 C 1.38019 * 120.07188 * 180.02562 * 11 10 9 13 13 C 1.38578 * 120.40210 * 359.97438 * 12 11 10 14 14 C 1.37823 * 120.32136 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.92247 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.19475 * 179.97438 * 15 14 13 17 17 O 1.21598 * 119.99637 * 135.29984 * 16 15 14 18 18 N 1.34778 * 120.00353 * 315.29777 * 16 15 14 19 19 C 1.47124 * 121.04424 * 174.23035 * 18 16 15 20 20 C 1.53221 * 108.71703 * 127.81387 * 19 18 16 21 21 O 1.43100 * 109.34425 * 54.06745 * 20 19 18 22 22 C 1.42584 * 113.95541 * 299.89061 * 21 20 19 23 23 C 1.53374 * 113.65774 * 287.42773 * 22 21 20 24 24 C 1.53848 * 86.95852 * 219.93461 * 23 22 21 25 25 C 1.53345 * 113.71613 * 189.35640 * 22 21 20 26 26 C 1.47323 * 121.04111 * 353.94508 * 18 16 15 27 27 H 0.96992 * 119.99913 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.96364 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.80113 * 180.27381 * 12 11 10 30 30 H 1.08005 * 119.83438 * 179.97438 * 13 12 11 31 31 H 1.08005 * 120.03614 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.59808 * 247.58559 * 19 18 16 33 33 H 1.09007 * 109.59894 * 8.04651 * 19 18 16 34 34 H 1.09003 * 109.49682 * 174.02818 * 20 19 18 35 35 H 1.09000 * 109.49551 * 294.08634 * 20 19 18 36 36 H 1.08997 * 113.63538 * 334.45245 * 23 22 21 37 37 H 1.08996 * 113.62882 * 105.41483 * 23 22 21 38 38 H 1.09002 * 113.60294 * 270.55372 * 24 23 22 39 39 H 1.08997 * 113.60023 * 139.69634 * 24 23 22 40 40 H 1.08996 * 113.63737 * 254.52978 * 25 22 21 41 41 H 1.09007 * 113.63161 * 25.48930 * 25 22 21 42 42 H 1.08996 * 109.74772 * 348.16959 * 26 18 16 43 43 H 1.09005 * 109.74090 * 108.89258 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0673 -3.5021 0.1235 11 6 3.4307 -3.4276 0.3747 12 6 4.1752 -4.5831 0.4991 13 6 3.5704 -5.8238 0.3752 14 6 2.2181 -5.9168 0.1259 15 6 1.4520 -4.7562 -0.0035 16 6 0.0041 -4.8488 -0.2710 17 8 -0.7742 -4.1473 0.3460 18 7 -0.4560 -5.7110 -1.1992 19 6 -1.8997 -5.9138 -1.3968 20 6 -2.2232 -5.7291 -2.8831 21 8 -1.3860 -6.5902 -3.6611 22 6 0.0088 -6.3418 -3.4999 23 6 0.4851 -5.0479 -4.1717 24 6 1.7424 -5.8272 -4.5947 25 6 0.8903 -7.1044 -4.4963 26 6 0.4710 -6.4751 -2.0520 27 1 -0.4849 0.8400 -0.0004 28 1 3.9092 -2.4644 0.4729 29 1 5.2346 -4.5201 0.6989 30 1 4.1618 -6.7221 0.4738 31 1 1.7515 -6.8862 0.0298 32 1 -2.1732 -6.9221 -1.0857 33 1 -2.4555 -5.1838 -0.8082 34 1 -3.2688 -5.9800 -3.0617 35 1 -2.0441 -4.6924 -3.1682 36 1 -0.1380 -4.7356 -5.0097 37 1 0.6877 -4.2397 -3.4689 38 1 2.5495 -5.7835 -3.8634 39 1 2.0754 -5.6016 -5.6077 40 1 1.4187 -7.9492 -4.0548 41 1 0.3792 -7.3612 -5.4242 42 1 1.4798 -6.0751 -1.9501 43 1 0.4593 -7.5252 -1.7598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127536913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:13 Heat of formation + Delta-G solvation = -66.054315 kcal Electronic energy + Delta-G solvation = -27843.254868 eV Core-core repulsion = 24047.637724 eV Total energy + Delta-G solvation = -3795.617145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04346 -40.90760 -39.66900 -38.12861 -37.39923 -35.83244 -34.37281 -32.52596 -30.80645 -30.63670 -28.28861 -27.42702 -26.82156 -25.41115 -24.64168 -23.33314 -22.81978 -20.88858 -19.99107 -19.67510 -18.99294 -18.12468 -17.92284 -17.09843 -16.80038 -16.46118 -16.40886 -15.96672 -15.78222 -15.57439 -15.51975 -15.36950 -15.11485 -14.58579 -14.40582 -14.04811 -13.95682 -13.59373 -13.44081 -13.25942 -12.99503 -12.75671 -12.55208 -12.44446 -12.35843 -12.30564 -12.12478 -11.93051 -11.72003 -11.53081 -11.36525 -10.88672 -10.87050 -10.75515 -9.84720 -9.58051 -9.08085 -8.50437 -6.21421 0.17171 0.67855 1.29817 1.40087 1.49697 1.68981 1.97260 2.12211 2.63954 2.79297 3.12397 3.37169 3.47472 3.49499 3.58464 3.69971 3.87091 3.91838 4.05859 4.11913 4.20626 4.26683 4.30258 4.45107 4.53194 4.54847 4.59117 4.67724 4.72980 4.79339 4.80877 4.92221 5.01311 5.04186 5.05602 5.09408 5.16975 5.36036 5.41644 5.49735 5.57629 5.67487 5.91582 6.11373 6.13571 6.29447 6.90597 7.19945 7.73533 8.71536 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.004981 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.694140 B = 5620.005677 C = 6227.493381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.022 2.978 4 H -0.243 1.243 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.420 4.420 8 H 0.108 0.892 9 O -0.210 6.210 10 C 0.148 3.852 11 C -0.250 4.250 12 C -0.042 4.042 13 C -0.190 4.190 14 C -0.036 4.036 15 C -0.235 4.235 16 C 0.565 3.435 17 O -0.579 6.579 18 N -0.614 5.614 19 C 0.075 3.925 20 C 0.055 3.945 21 O -0.365 6.365 22 C 0.067 3.933 23 C -0.175 4.175 24 C -0.130 4.130 25 C -0.094 4.094 26 C 0.101 3.899 27 H 0.271 0.729 28 H 0.123 0.877 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.028 0.972 36 H 0.084 0.916 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.492 -17.119 -8.315 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.166 1.166 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.495 4.495 8 H 0.125 0.875 9 O -0.114 6.114 10 C 0.095 3.905 11 C -0.269 4.269 12 C -0.060 4.060 13 C -0.208 4.208 14 C -0.054 4.054 15 C -0.239 4.239 16 C 0.357 3.643 17 O -0.458 6.458 18 N -0.348 5.348 19 C -0.047 4.047 20 C -0.022 4.022 21 O -0.284 6.284 22 C 0.027 3.973 23 C -0.213 4.213 24 C -0.167 4.167 25 C -0.131 4.131 26 C -0.021 4.021 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.174 0.826 30 H 0.185 0.815 31 H 0.170 0.830 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.572 -16.702 -8.130 19.394 hybrid contribution -0.366 1.918 0.528 2.023 sum 5.206 -14.785 -7.602 17.421 Atomic orbital electron populations 1.70289 1.08439 1.28644 1.47659 1.26758 0.96740 1.03175 0.95570 0.84502 0.78536 0.74437 0.78504 1.16633 1.19365 1.19470 1.21995 0.92620 0.81408 1.53508 0.87465 1.84056 1.35815 1.12604 1.78918 1.19940 0.91752 0.87004 0.91853 1.21301 0.92825 1.00996 1.11812 1.21430 1.00497 0.91129 0.92925 1.21176 0.94026 0.98425 1.07172 1.21246 0.94223 0.95423 0.94554 1.19082 0.92891 0.92783 1.19165 1.18623 0.88740 0.77901 0.79067 1.90781 1.59352 1.43550 1.52156 1.48055 1.07522 1.42935 1.36296 1.22322 0.81109 1.03296 0.98006 1.22915 0.96684 0.93677 0.88954 1.87908 1.15907 1.58468 1.66097 1.23251 0.82016 0.97497 0.94580 1.23529 1.00308 0.97057 1.00394 1.22744 0.95401 0.95474 1.03115 1.22913 0.94540 0.97324 0.98356 1.22395 0.94341 0.97577 0.87783 0.91990 0.85879 0.82619 0.81518 0.82990 0.88005 0.90841 0.84649 0.95312 0.89704 0.95411 0.89445 0.89115 0.87637 0.87897 0.87930 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.80 13.67 21.62 0.30 -59.51 16 2 C -0.02 -1.43 5.49 84.85 0.47 -0.96 16 3 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 4 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.42 -25.20 9.43 67.93 0.64 -24.56 16 8 H 0.11 5.77 5.32 -2.91 -0.02 5.75 16 9 O -0.21 -13.32 8.68 -7.73 -0.07 -13.39 16 10 C 0.15 7.58 6.63 22.91 0.15 7.73 16 11 C -0.25 -10.48 9.12 22.36 0.20 -10.27 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 13 C -0.19 -4.86 10.02 22.25 0.22 -4.64 16 14 C -0.04 -1.10 7.57 22.52 0.17 -0.93 16 15 C -0.23 -10.27 4.94 -19.99 -0.10 -10.36 16 16 C 0.57 26.65 7.05 86.69 0.61 27.27 16 17 O -0.58 -34.25 15.81 8.37 0.13 -34.12 16 18 N -0.61 -21.88 3.03 -822.26 -2.49 -24.37 16 19 C 0.08 2.35 6.61 86.33 0.57 2.92 16 20 C 0.05 1.52 6.88 72.06 0.50 2.02 16 21 O -0.37 -9.69 10.52 -148.98 -1.57 -11.25 16 22 C 0.07 1.68 1.25 -10.70 -0.01 1.66 16 23 C -0.17 -5.06 6.90 31.01 0.21 -4.85 16 24 C -0.13 -2.64 7.73 31.17 0.24 -2.40 16 25 C -0.09 -1.60 7.50 31.00 0.23 -1.37 16 26 C 0.10 2.64 4.13 86.08 0.36 3.00 16 27 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 28 H 0.12 5.25 5.73 -2.91 -0.02 5.24 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.15 3.52 7.01 -2.91 -0.02 3.50 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.74 7.05 -2.38 -0.02 2.72 16 34 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.03 0.96 7.77 -2.39 -0.02 0.94 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.03 1.05 8.09 -2.39 -0.02 1.03 16 38 H 0.09 1.77 7.66 -2.39 -0.02 1.75 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.26 8.09 -2.39 -0.02 1.24 16 41 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.10 2.78 4.58 -2.39 -0.01 2.77 16 43 H 0.11 2.09 8.08 -2.38 -0.02 2.07 16 Total: -1.00 -87.77 348.38 4.05 -83.72 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 1.03 Total: 29.52 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.69 Total: -16.77 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.20 Total: -83.88 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.50 Total: -58.75 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -87.77 4.05 -83.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127536913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.663 kcal (2) G-P(sol) polarization free energy of solvation -87.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds