Wall clock time and date at job start Tue Mar 31 2020 11:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38550 * 120.10553 * 2 1 4 4 O 1.35745 * 119.73368 * 359.97438 * 3 2 1 5 5 C 1.39333 * 120.53908 * 180.02562 * 3 2 1 6 6 C 1.36501 * 120.43555 * 359.97438 * 5 3 2 7 7 C 1.39928 * 119.79029 * 359.97438 * 6 5 3 8 8 C 1.46442 * 120.99561 * 180.02562 * 7 6 5 9 9 C 1.50695 * 120.90467 * 359.95509 * 8 7 6 10 10 N 1.46901 * 109.47197 * 284.84784 * 9 8 7 11 11 C 1.46893 * 111.00249 * 288.00591 * 10 9 8 12 12 C 1.46902 * 111.00099 * 164.04596 * 10 9 8 13 13 H 1.08996 * 109.47183 * 310.00619 * 12 10 9 14 14 C 1.52997 * 109.46764 * 70.00394 * 12 10 9 15 15 C 1.50699 * 109.47044 * 190.00242 * 12 10 9 16 16 H 1.08006 * 120.00264 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99788 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00262 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99843 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47226 * 90.00088 * 19 17 15 21 21 H 1.48503 * 109.46675 * 209.99551 * 19 17 15 22 22 H 1.48495 * 109.47154 * 329.99770 * 19 17 15 23 23 C 1.35861 * 118.18982 * 179.17424 * 8 7 6 24 24 C 1.41006 * 119.82936 * 0.81824 * 23 8 7 25 25 O 1.21798 * 119.15583 * 179.40830 * 24 23 8 26 26 O 1.34223 * 121.68846 * 359.43169 * 24 23 8 27 27 C 1.35028 * 121.46668 * 359.97438 * 26 24 23 28 28 H 1.08991 * 109.46979 * 90.00493 * 1 2 3 29 29 H 1.08995 * 109.47208 * 330.00101 * 1 2 3 30 30 H 1.09006 * 109.46717 * 210.00215 * 1 2 3 31 31 H 0.96699 * 113.99606 * 90.00607 * 4 3 2 32 32 H 1.07997 * 119.78364 * 179.97438 * 5 3 2 33 33 H 1.07996 * 120.10537 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46987 * 44.84997 * 9 8 7 35 35 H 1.09000 * 109.47124 * 164.85118 * 9 8 7 36 36 H 1.09007 * 109.47384 * 65.72510 * 11 10 9 37 37 H 1.08999 * 109.47062 * 185.72349 * 11 10 9 38 38 H 1.08997 * 109.47040 * 305.72546 * 11 10 9 39 39 H 1.09001 * 109.47252 * 300.00263 * 14 12 10 40 40 H 1.09006 * 109.47098 * 60.00009 * 14 12 10 41 41 H 1.08998 * 109.47200 * 179.97438 * 14 12 10 42 42 H 0.96996 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.08568 * 180.24473 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3723 -0.0005 5 6 3.5953 1.2091 -0.0005 6 6 4.2956 0.0375 -0.0005 7 6 3.6100 -1.1823 0.0005 8 6 4.3348 -2.4548 0.0011 9 6 5.8413 -2.4874 -0.0004 10 7 6.3372 -2.1446 -1.3401 11 6 6.0883 -3.2377 -2.2892 12 6 7.7638 -1.7965 -1.3003 13 1 7.9365 -1.0610 -0.5146 14 6 8.5875 -3.0532 -1.0124 15 6 8.1771 -1.2184 -2.6292 16 1 7.4523 -1.1192 -3.4239 17 6 9.4804 -0.8163 -2.8307 18 7 10.3628 -0.9366 -1.8630 19 14 9.9925 -0.0991 -4.4779 20 1 9.8032 1.3736 -4.4569 21 1 11.4224 -0.4108 -4.7303 22 1 9.1593 -0.6901 -5.5556 23 6 3.6120 -3.6050 0.0194 24 6 2.2031 -3.5482 0.0197 25 8 1.5673 -4.5870 0.0252 26 8 1.5446 -2.3785 0.0135 27 6 2.2025 -1.1994 0.0073 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 0.8899 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.3221 2.7125 0.8827 32 1 4.1246 2.1505 -0.0009 33 1 5.3755 0.0519 -0.0005 34 1 6.2211 -1.7661 0.7232 35 1 6.1834 -3.4867 0.2688 36 1 5.0142 -3.3606 -2.4285 37 1 6.5540 -3.0013 -3.2459 38 1 6.5120 -4.1625 -1.8976 39 1 8.2886 -3.4713 -0.0512 40 1 8.4148 -3.7888 -1.7981 41 1 9.6461 -2.7950 -0.9833 42 1 11.2796 -0.6534 -2.0046 43 1 4.1152 -4.5606 0.0244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129549648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:33 Heat of formation + Delta-G solvation = -65.707746 kcal Electronic energy + Delta-G solvation = -26893.358813 eV Core-core repulsion = 23097.756697 eV Total energy + Delta-G solvation = -3795.602116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93210 -39.66184 -38.01194 -37.70575 -36.27560 -34.63412 -32.75438 -32.32217 -29.31769 -29.06266 -27.75141 -26.83106 -25.33053 -24.51107 -24.29631 -22.56964 -21.15455 -19.99775 -19.31571 -17.89970 -17.64339 -17.43160 -16.73765 -16.30989 -15.53292 -15.34397 -15.32609 -14.80568 -14.39902 -14.06175 -13.93667 -13.80909 -13.47914 -13.28369 -12.86830 -12.72539 -12.52789 -12.42670 -12.17175 -12.05842 -11.71764 -11.64530 -11.26184 -11.18265 -10.91734 -10.82619 -10.81004 -10.63761 -10.30702 -10.16527 -10.06889 -9.86762 -9.04871 -8.69738 -8.49209 -8.30641 -7.44750 -6.12188 -4.16360 0.18645 0.98104 1.46999 2.37220 2.80001 3.25020 3.32211 3.35582 3.56894 3.92768 4.16376 4.25535 4.34546 4.43941 4.70818 4.80688 5.01013 5.11704 5.18292 5.20767 5.45494 5.47300 5.51136 5.56133 5.74881 5.81786 5.90769 5.99428 6.05069 6.09893 6.17041 6.21204 6.35623 6.41951 6.51975 6.68573 6.75050 6.94361 7.18991 7.24258 7.33463 7.50578 7.55116 7.69272 7.90990 8.19303 8.39059 8.89351 9.49484 10.94685 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.004090 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.112694 B = 6844.350575 C = 8219.824323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.138 4.138 3 C 0.155 3.845 4 O -0.489 6.489 5 C -0.165 4.165 6 C -0.017 4.017 7 C -0.143 4.143 8 C 0.067 3.933 9 C 0.074 3.926 10 N -0.525 5.525 11 C 0.031 3.969 12 C 0.212 3.788 13 H 0.041 0.959 14 C -0.174 4.174 15 C -0.501 4.501 16 H 0.063 0.937 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.271 4.271 24 C 0.515 3.485 25 O -0.477 6.477 26 O -0.272 6.272 27 C 0.155 3.845 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.020 0.980 39 H 0.007 0.993 40 H 0.032 0.968 41 H 0.090 0.910 42 H 0.261 0.739 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 3.419 7.519 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.110 3.890 4 O -0.299 6.299 5 C -0.183 4.183 6 C -0.035 4.035 7 C -0.144 4.144 8 C 0.066 3.934 9 C -0.054 4.054 10 N -0.249 5.249 11 C -0.118 4.118 12 C 0.106 3.894 13 H 0.058 0.942 14 C -0.233 4.233 15 C -0.539 4.539 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.291 4.291 24 C 0.365 3.635 25 O -0.367 6.367 26 O -0.184 6.184 27 C 0.110 3.890 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.251 0.749 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.039 0.961 39 H 0.026 0.974 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.227 3.318 6.783 16.106 hybrid contribution 1.043 -0.370 -0.189 1.123 sum -13.184 2.948 6.594 15.033 Atomic orbital electron populations 1.20507 0.89354 1.02847 1.02993 1.19429 0.97430 0.89292 1.07733 1.18129 0.89492 0.84181 0.97164 1.84785 1.76206 1.35422 1.33535 1.21215 0.92863 0.99794 1.04442 1.21009 1.01514 0.89452 0.91521 1.19031 0.90987 0.94968 1.09391 1.21766 0.97212 0.90505 0.83957 1.21241 0.87582 1.01379 0.95187 1.62412 1.21780 1.37604 1.03107 1.22306 0.99149 0.92082 0.98214 1.19394 0.79066 0.92745 0.98166 0.94153 1.22436 1.05817 0.98968 0.96087 1.21054 0.94540 1.40345 0.98003 0.91838 1.24904 0.96489 0.95799 0.96896 1.69869 1.03644 1.47744 1.32013 0.86518 0.77622 0.79450 0.83952 1.20638 1.21350 1.19921 1.22367 0.92428 1.00709 1.13611 1.19175 0.88385 0.80798 0.75103 1.90954 1.70855 1.26959 1.47902 1.83488 1.43335 1.13805 1.77735 1.18607 0.89237 0.83242 0.97867 0.90829 0.91168 0.91059 0.74948 0.84152 0.82768 0.89088 0.92992 0.93888 0.90137 0.96145 0.97435 0.94847 0.89152 0.92894 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.59 36.01 0.35 -0.65 16 2 C -0.14 -1.65 5.90 -104.36 -0.62 -2.27 16 3 C 0.16 1.71 6.68 -39.06 -0.26 1.45 16 4 O -0.49 -4.33 12.50 -18.94 -0.24 -4.57 16 5 C -0.16 -1.89 9.91 -39.80 -0.39 -2.28 16 6 C -0.02 -0.22 9.40 -39.58 -0.37 -0.60 16 7 C -0.14 -2.02 5.87 -105.01 -0.62 -2.63 16 8 C 0.07 0.98 4.88 -102.18 -0.50 0.48 16 9 C 0.07 1.14 3.80 -4.98 -0.02 1.12 16 10 N -0.53 -9.82 4.64 -237.74 -1.10 -10.93 16 11 C 0.03 0.56 8.35 60.06 0.50 1.06 16 12 C 0.21 4.72 2.30 -68.87 -0.16 4.56 16 13 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 14 C -0.17 -3.81 8.25 37.16 0.31 -3.51 16 15 C -0.50 -12.61 7.83 -34.44 -0.27 -12.88 16 16 H 0.06 1.63 7.18 -52.48 -0.38 1.25 16 17 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 18 N -0.89 -23.84 11.32 55.43 0.63 -23.22 16 19 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.27 -3.93 9.37 -39.39 -0.37 -4.30 16 24 C 0.51 8.29 7.89 31.78 0.25 8.54 16 25 O -0.48 -8.85 17.91 -19.60 -0.35 -9.20 16 26 O -0.27 -4.15 8.92 -20.81 -0.19 -4.33 16 27 C 0.16 2.17 6.72 -38.48 -0.26 1.91 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 30 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 31 H 0.39 1.46 9.06 45.56 0.41 1.88 16 32 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.15 2.12 6.88 -52.49 -0.36 1.76 16 34 H 0.09 1.33 7.11 -51.93 -0.37 0.96 16 35 H 0.05 0.78 7.03 -51.93 -0.36 0.42 16 36 H 0.04 0.72 7.48 -51.92 -0.39 0.33 16 37 H 0.08 1.60 6.65 -51.93 -0.35 1.25 16 38 H 0.02 0.35 6.68 -51.93 -0.35 0.01 16 39 H 0.01 0.13 7.06 -51.93 -0.37 -0.23 16 40 H 0.03 0.72 6.55 -51.93 -0.34 0.38 16 41 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.16 2.11 8.01 -52.49 -0.42 1.69 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -29.49 351.38 -8.25 -37.74 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.75 Total: 2.37 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.52 Total: -8.52 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.48 Total: -34.14 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.77 Total: -18.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.49 -8.25 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129549648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.967 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds