Wall clock time and date at job start Tue Mar 31 2020 11:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38550 * 120.10553 * 2 1 4 4 O 1.35745 * 119.73368 * 359.97438 * 3 2 1 5 5 C 1.39333 * 120.53908 * 180.02562 * 3 2 1 6 6 C 1.36501 * 120.43555 * 359.97438 * 5 3 2 7 7 C 1.39928 * 119.79029 * 359.97438 * 6 5 3 8 8 C 1.46442 * 120.99561 * 180.02562 * 7 6 5 9 9 C 1.50695 * 120.90467 * 359.95509 * 8 7 6 10 10 N 1.46901 * 109.47197 * 284.84784 * 9 8 7 11 11 C 1.46893 * 111.00249 * 288.00591 * 10 9 8 12 12 C 1.46902 * 111.00099 * 164.04596 * 10 9 8 13 13 H 1.08996 * 109.47183 * 310.00619 * 12 10 9 14 14 C 1.52997 * 109.46764 * 70.00394 * 12 10 9 15 15 C 1.50699 * 109.47044 * 190.00242 * 12 10 9 16 16 H 1.08006 * 120.00264 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99788 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00262 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99843 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47226 * 90.00088 * 19 17 15 21 21 H 1.48503 * 109.46675 * 209.99551 * 19 17 15 22 22 H 1.48495 * 109.47154 * 329.99770 * 19 17 15 23 23 C 1.35861 * 118.18982 * 179.17424 * 8 7 6 24 24 C 1.41006 * 119.82936 * 0.81824 * 23 8 7 25 25 O 1.21798 * 119.15583 * 179.40830 * 24 23 8 26 26 O 1.34223 * 121.68846 * 359.43169 * 24 23 8 27 27 C 1.35028 * 121.46668 * 359.97438 * 26 24 23 28 28 H 1.08991 * 109.46979 * 90.00493 * 1 2 3 29 29 H 1.08995 * 109.47208 * 330.00101 * 1 2 3 30 30 H 1.09006 * 109.46717 * 210.00215 * 1 2 3 31 31 H 0.96699 * 113.99606 * 90.00607 * 4 3 2 32 32 H 1.07997 * 119.78364 * 179.97438 * 5 3 2 33 33 H 1.07996 * 120.10537 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46987 * 44.84997 * 9 8 7 35 35 H 1.09000 * 109.47124 * 164.85118 * 9 8 7 36 36 H 1.09007 * 109.47384 * 65.72510 * 11 10 9 37 37 H 1.08999 * 109.47062 * 185.72349 * 11 10 9 38 38 H 1.08997 * 109.47040 * 305.72546 * 11 10 9 39 39 H 1.09001 * 109.47252 * 300.00263 * 14 12 10 40 40 H 1.09006 * 109.47098 * 60.00009 * 14 12 10 41 41 H 1.08998 * 109.47200 * 179.97438 * 14 12 10 42 42 H 0.96996 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.08568 * 180.24473 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5200 2.3723 -0.0005 5 6 3.5953 1.2091 -0.0005 6 6 4.2956 0.0375 -0.0005 7 6 3.6100 -1.1823 0.0005 8 6 4.3348 -2.4548 0.0011 9 6 5.8413 -2.4874 -0.0004 10 7 6.3372 -2.1446 -1.3401 11 6 6.0883 -3.2377 -2.2892 12 6 7.7638 -1.7965 -1.3003 13 1 7.9365 -1.0610 -0.5146 14 6 8.5875 -3.0532 -1.0124 15 6 8.1771 -1.2184 -2.6292 16 1 7.4523 -1.1192 -3.4239 17 6 9.4804 -0.8163 -2.8307 18 7 10.3628 -0.9366 -1.8630 19 14 9.9925 -0.0991 -4.4779 20 1 9.8032 1.3736 -4.4569 21 1 11.4224 -0.4108 -4.7303 22 1 9.1593 -0.6901 -5.5556 23 6 3.6120 -3.6050 0.0194 24 6 2.2031 -3.5482 0.0197 25 8 1.5673 -4.5870 0.0252 26 8 1.5446 -2.3785 0.0135 27 6 2.2025 -1.1994 0.0073 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 0.8899 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.3221 2.7125 0.8827 32 1 4.1246 2.1505 -0.0009 33 1 5.3755 0.0519 -0.0005 34 1 6.2211 -1.7661 0.7232 35 1 6.1834 -3.4867 0.2688 36 1 5.0142 -3.3606 -2.4285 37 1 6.5540 -3.0013 -3.2459 38 1 6.5120 -4.1625 -1.8976 39 1 8.2886 -3.4713 -0.0512 40 1 8.4148 -3.7888 -1.7981 41 1 9.6461 -2.7950 -0.9833 42 1 11.2796 -0.6534 -2.0046 43 1 4.1152 -4.5606 0.0244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129549648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:32 Heat of formation + Delta-G solvation = -83.528949 kcal Electronic energy + Delta-G solvation = -26894.131598 eV Core-core repulsion = 23097.756697 eV Total energy + Delta-G solvation = -3796.374902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.05841 -40.63620 -39.40313 -38.88372 -37.37539 -35.87043 -34.39914 -33.39129 -30.74532 -30.32508 -29.06235 -27.82091 -27.21124 -25.98611 -25.35633 -23.74765 -22.33580 -21.15950 -20.73719 -18.98863 -18.60370 -18.47786 -18.15523 -17.92271 -17.03683 -16.66079 -16.18820 -16.08717 -15.91856 -15.38572 -15.31754 -14.88451 -14.57463 -14.41684 -14.24323 -14.10739 -13.70886 -13.47148 -13.31289 -13.20329 -13.09402 -12.89665 -12.77064 -12.72559 -12.56958 -12.46272 -12.25430 -12.01995 -11.86774 -11.67702 -11.34987 -11.15457 -10.88192 -10.45119 -9.67746 -9.34698 -8.96323 -8.08317 -6.17226 -0.88743 -0.04758 0.42301 1.25534 1.44089 1.47064 1.55001 1.68952 2.44416 2.54951 2.97553 3.10528 3.22206 3.23509 3.34201 3.51336 3.83094 3.90485 4.07224 4.17055 4.37490 4.47870 4.50311 4.60623 4.68278 4.71369 4.74740 4.76105 4.82878 4.85891 4.95371 5.07362 5.16764 5.17966 5.18416 5.25369 5.33027 5.51409 5.53807 5.73339 5.80530 6.03117 6.18696 6.31061 6.43175 6.65372 6.77887 6.94603 7.51678 8.97165 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.004090 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.112694 B = 6844.350575 C = 8219.824323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.142 4.142 3 C 0.174 3.826 4 O -0.489 6.489 5 C -0.161 4.161 6 C -0.025 4.025 7 C -0.158 4.158 8 C 0.075 3.925 9 C 0.078 3.922 10 N -0.529 5.529 11 C 0.037 3.963 12 C 0.219 3.781 13 H 0.023 0.977 14 C -0.163 4.163 15 C -0.509 4.509 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.272 4.272 24 C 0.515 3.485 25 O -0.511 6.511 26 O -0.276 6.276 27 C 0.139 3.861 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.419 0.581 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.260 0.740 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 4.770 7.720 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C 0.128 3.872 4 O -0.304 6.304 5 C -0.179 4.179 6 C -0.043 4.043 7 C -0.159 4.159 8 C 0.074 3.926 9 C -0.050 4.050 10 N -0.253 5.253 11 C -0.112 4.112 12 C 0.112 3.888 13 H 0.041 0.959 14 C -0.222 4.222 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.180 4.180 18 N -0.557 5.557 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.292 4.292 24 C 0.367 3.633 25 O -0.403 6.403 26 O -0.188 6.188 27 C 0.095 3.905 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.281 0.719 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.290 4.697 7.003 17.461 hybrid contribution 1.284 -0.632 -0.212 1.446 sum -14.006 4.065 6.791 16.088 Atomic orbital electron populations 1.20569 0.87905 1.03916 1.03238 1.19727 0.98588 0.88877 1.07142 1.18074 0.89297 0.84593 0.95246 1.84731 1.75701 1.34180 1.35805 1.21437 0.93287 0.99929 1.03260 1.20970 1.01159 0.89845 0.92346 1.19089 0.91225 0.95072 1.10530 1.21647 0.96485 0.90882 0.83625 1.21233 0.88139 1.02085 0.93524 1.62238 1.19529 1.38456 1.05062 1.22233 0.99792 0.92032 0.97121 1.19126 0.81142 0.92336 0.96155 0.95938 1.22262 1.03889 0.98812 0.97240 1.21309 0.94404 1.40092 0.98971 0.92791 1.25522 0.96711 0.96368 0.99447 1.69977 1.03733 1.48635 1.33348 0.85691 0.77057 0.78802 0.80845 1.20318 1.21357 1.19838 1.22362 0.91660 1.01242 1.13926 1.19322 0.88758 0.80665 0.74524 1.90930 1.71471 1.28118 1.49830 1.83444 1.43653 1.14098 1.77569 1.18861 0.89381 0.83254 0.99017 0.90902 0.88522 0.91640 0.71872 0.82301 0.83678 0.88273 0.92077 0.92542 0.92225 0.95433 0.95160 0.95047 0.91977 0.93051 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.59 71.24 0.68 -1.06 16 2 C -0.14 -3.12 5.90 -19.69 -0.12 -3.23 16 3 C 0.17 3.32 6.68 22.61 0.15 3.47 16 4 O -0.49 -6.79 12.50 -90.69 -1.13 -7.93 16 5 C -0.16 -3.31 9.91 22.13 0.22 -3.09 16 6 C -0.03 -0.63 9.40 22.27 0.21 -0.42 16 7 C -0.16 -4.31 5.87 -20.11 -0.12 -4.43 16 8 C 0.08 2.11 4.88 -18.28 -0.09 2.02 16 9 C 0.08 2.31 3.80 85.56 0.32 2.63 16 10 N -0.53 -19.43 4.64 -906.07 -4.21 -23.64 16 11 C 0.04 1.30 8.35 127.69 1.07 2.36 16 12 C 0.22 9.73 2.30 44.17 0.10 9.83 16 13 H 0.02 1.09 7.86 -2.39 -0.02 1.07 16 14 C -0.16 -7.07 8.25 71.98 0.59 -6.48 16 15 C -0.51 -25.69 7.83 25.60 0.20 -25.49 16 16 H 0.05 2.78 7.18 -2.91 -0.02 2.76 16 17 C 0.02 0.95 5.30 84.65 0.45 1.40 16 18 N -0.92 -49.24 11.32 21.45 0.24 -48.99 16 19 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C -0.27 -7.69 9.37 22.40 0.21 -7.48 16 24 C 0.51 16.51 7.89 68.50 0.54 17.05 16 25 O -0.51 -19.11 17.91 18.95 0.34 -18.77 16 26 O -0.28 -8.32 8.92 14.63 0.13 -8.19 16 27 C 0.14 3.74 6.72 22.98 0.15 3.89 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.14 7.52 -2.39 -0.02 1.13 16 30 H 0.06 1.23 7.56 -2.38 -0.02 1.21 16 31 H 0.42 1.30 9.06 -74.06 -0.67 0.63 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.15 3.90 6.88 -2.91 -0.02 3.88 16 34 H 0.10 2.79 7.11 -2.39 -0.02 2.78 16 35 H 0.06 1.72 7.03 -2.39 -0.02 1.71 16 36 H 0.06 1.84 7.48 -2.38 -0.02 1.82 16 37 H 0.06 2.36 6.65 -2.39 -0.02 2.34 16 38 H 0.03 0.93 6.68 -2.39 -0.02 0.91 16 39 H 0.03 1.13 7.06 -2.39 -0.02 1.12 16 40 H 0.03 1.33 6.55 -2.38 -0.02 1.32 16 41 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 42 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 43 H 0.17 4.32 8.01 -2.91 -0.02 4.30 16 Total: -1.00 -62.81 351.38 2.36 -60.45 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.39 Total: 12.35 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.58 Total: -9.03 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -3.96 Total: -72.63 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.66 Total: -34.89 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -62.81 2.36 -60.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129549648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.079 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds