Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47201 * 299.99931 * 3 2 1 6 6 H 1.48497 * 109.47579 * 59.99734 * 3 2 1 7 7 C 1.38813 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00634 * 202.14714 * 7 2 1 9 9 N 1.36943 * 119.99927 * 22.14941 * 7 2 1 10 10 C 1.46500 * 119.99794 * 33.71292 * 9 7 2 11 11 N 1.46499 * 109.47124 * 95.49727 * 10 9 7 12 12 C 1.35027 * 125.92929 * 94.99738 * 11 10 9 13 13 C 1.35098 * 107.97139 * 179.73162 * 12 11 10 14 14 C 1.40833 * 107.85167 * 0.02562 * 13 12 11 15 15 C 1.48453 * 126.04207 * 179.97438 * 14 13 12 16 16 C 1.39336 * 122.75802 * 180.02562 * 15 14 13 17 17 C 1.33087 * 114.91101 * 179.97438 * 16 15 14 18 18 S 1.75825 * 109.90979 * 359.97438 * 17 16 15 19 19 C 1.34506 * 122.76036 * 359.70728 * 15 14 13 20 20 N 1.31608 * 107.92005 * 359.97438 * 14 13 12 21 21 C 1.46501 * 120.00076 * 213.71479 * 9 7 2 22 22 C 1.54265 * 110.03013 * 57.90873 * 21 9 7 23 23 C 1.54964 * 104.15844 * 217.13598 * 22 21 9 24 24 C 1.54891 * 102.77864 * 37.88583 * 23 22 21 25 25 C 1.53862 * 110.03064 * 300.68876 * 21 9 7 26 26 H 0.97003 * 119.98948 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47504 * 335.49214 * 10 9 7 28 28 H 1.09003 * 109.46901 * 215.49595 * 10 9 7 29 29 H 1.08002 * 126.01231 * 359.76352 * 12 11 10 30 30 H 1.08008 * 126.07556 * 179.97438 * 13 12 11 31 31 H 1.08001 * 122.54929 * 359.94908 * 16 15 14 32 32 H 1.07991 * 125.04723 * 179.97438 * 17 16 15 33 33 H 1.08003 * 125.22227 * 359.97438 * 19 15 14 34 34 H 1.09001 * 110.01196 * 179.29030 * 21 9 7 35 35 H 1.08998 * 110.49096 * 335.78266 * 22 21 9 36 36 H 1.08995 * 110.49100 * 98.42708 * 22 21 9 37 37 H 1.09003 * 110.72172 * 279.57513 * 23 22 21 38 38 H 1.08995 * 110.92661 * 156.29635 * 23 22 21 39 39 H 1.08993 * 110.48993 * 203.40957 * 24 23 22 40 40 H 1.09002 * 110.59499 * 80.81726 * 24 23 22 41 41 H 1.09002 * 110.03170 * 238.56894 * 25 21 9 42 42 H 1.09003 * 110.03754 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0304 -1.2367 0.3531 9 7 1.4013 -2.3445 -0.4461 10 6 0.4253 -2.2760 -1.5365 11 7 1.0927 -2.5646 -2.8082 12 6 1.1548 -3.7693 -3.4149 13 6 1.8491 -3.6219 -4.5644 14 6 2.2303 -2.2701 -4.6682 15 6 3.0106 -1.6652 -5.7768 16 6 3.3514 -0.3146 -5.8095 17 6 4.0535 0.0607 -6.8760 18 16 4.3293 -1.3210 -7.9278 19 6 3.4522 -2.3772 -6.8290 20 7 1.7724 -1.6378 -3.6086 21 6 1.7258 -3.6352 0.1665 22 6 1.4348 -3.5894 1.6808 23 6 2.5750 -4.4282 2.3114 24 6 3.8002 -4.0485 1.4431 25 6 3.2289 -3.9272 0.0152 26 1 -0.4849 0.8402 0.0004 27 1 -0.0095 -1.2771 -1.5728 28 1 -0.3629 -3.0092 -1.3652 29 1 0.7245 -4.6888 -3.0464 30 1 2.0729 -4.4022 -5.2768 31 1 3.0670 0.3756 -5.0290 32 1 4.4021 1.0648 -7.0671 33 1 3.2919 -3.4350 -6.9769 34 1 1.1423 -4.4277 -0.3020 35 1 1.4702 -2.5628 2.0452 36 1 0.4654 -4.0385 1.8967 37 1 2.3598 -5.4937 2.2309 38 1 2.7364 -4.1458 3.3517 39 1 4.5561 -4.8325 1.4863 40 1 4.2202 -3.0966 1.7681 41 1 3.3750 -4.8621 -0.5259 42 1 3.7169 -3.1090 -0.5143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153395776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = 125.828703 kcal Electronic energy + Delta-G solvation = -24381.837284 eV Core-core repulsion = 21069.586433 eV Total energy + Delta-G solvation = -3312.250850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32990 -37.93660 -37.38612 -34.58994 -31.86262 -30.72599 -29.45507 -29.00217 -27.98119 -26.77836 -25.56879 -23.83950 -22.47681 -20.50494 -20.11931 -20.02940 -19.22388 -18.22376 -17.26418 -16.92363 -15.97995 -15.51171 -14.88672 -14.60645 -14.37581 -14.14255 -13.49592 -13.31039 -13.15545 -12.98514 -12.71255 -12.61804 -12.51299 -12.12226 -11.87184 -11.42077 -11.34152 -11.09398 -10.81986 -10.74831 -10.54870 -10.47277 -10.41151 -10.31381 -10.16123 -10.02597 -9.79015 -9.72334 -9.25873 -8.65331 -8.55059 -8.04349 -7.58682 -7.01401 -6.07369 -3.55622 1.09713 1.79335 2.09002 2.45991 2.89551 3.29010 3.40845 3.43842 3.55615 3.97565 4.36593 5.03319 5.09275 5.15712 5.17859 5.31087 5.35375 5.50204 5.52713 5.58906 5.73595 5.84251 5.97308 6.12960 6.14932 6.17852 6.21262 6.29671 6.34427 6.37726 6.46270 6.48293 6.50700 6.60755 6.69991 6.83607 6.85247 7.04990 7.07932 7.19816 7.35729 7.69531 7.96454 8.26122 8.60032 8.91428 9.55721 10.05622 10.99603 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.004359 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.342063 B = 6421.681981 C = 7495.255140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.023 3.977 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.554 5.554 10 C 0.343 3.657 11 N -0.338 5.338 12 C 0.039 3.961 13 C -0.276 4.276 14 C 0.085 3.915 15 C -0.004 4.004 16 C -0.109 4.109 17 C -0.218 4.218 18 S 0.078 5.922 19 C -0.202 4.202 20 N -0.258 5.258 21 C 0.164 3.836 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.260 0.740 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.159 0.841 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -7.038 -7.998 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.178 4.178 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.272 5.272 10 C 0.137 3.863 11 N -0.127 5.127 12 C -0.110 4.110 13 C -0.306 4.306 14 C -0.080 4.080 15 C -0.018 4.018 16 C -0.139 4.139 17 C -0.352 4.352 18 S 0.340 5.660 19 C -0.340 4.340 20 N -0.083 5.083 21 C 0.058 3.942 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.172 4.172 26 H 0.070 0.930 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.183 0.817 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.544 -5.927 -8.495 11.311 hybrid contribution -0.193 0.090 0.916 0.941 sum 4.351 -5.837 -7.579 10.509 Atomic orbital electron populations 1.69867 1.05649 1.26435 1.51203 1.25056 0.95037 0.98970 0.98698 0.86238 0.79890 0.83374 0.77327 1.20005 1.20992 1.21671 1.18932 0.95108 0.85156 1.39134 0.91546 1.44516 1.48030 1.03126 1.31509 1.22007 0.87324 1.04926 0.71995 1.51698 1.38809 1.04072 1.18153 1.22408 1.01673 0.91992 0.94886 1.21154 1.11672 0.96310 1.01491 1.20126 1.01104 0.92635 0.94140 1.16965 0.98998 0.92560 0.93299 1.20305 0.98897 0.95819 0.98906 1.25392 1.08084 1.02351 0.99397 1.83974 1.55978 1.00422 1.25662 1.25498 1.06574 1.03345 0.98580 1.77606 1.11911 1.16469 1.02309 1.21188 0.93205 0.87464 0.92372 1.22734 0.96126 1.01341 0.96449 1.22443 0.96314 0.98922 0.98400 1.22252 0.96889 1.00378 0.95996 1.22553 0.98119 1.00420 0.96077 0.93031 0.84538 0.91550 0.82402 0.85170 0.83545 0.81955 0.81712 0.93280 0.89411 0.93274 0.92727 0.92590 0.93220 0.91924 0.93620 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.32 55.49 0.63 -23.16 16 2 C 0.02 0.60 4.92 -17.43 -0.09 0.51 16 3 Si 0.90 21.47 29.61 -169.99 -5.03 16.44 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.45 7.65 -15.06 -0.12 -6.57 16 8 H 0.07 1.75 7.25 -52.49 -0.38 1.37 16 9 N -0.55 -12.56 2.64 -168.07 -0.44 -13.01 16 10 C 0.34 7.60 6.49 -63.75 -0.41 7.19 16 11 N -0.34 -7.12 3.85 -64.60 -0.25 -7.37 16 12 C 0.04 0.70 11.46 -17.26 -0.20 0.50 16 13 C -0.28 -4.78 10.32 -39.72 -0.41 -5.19 16 14 C 0.09 1.66 7.05 -82.77 -0.58 1.08 16 15 C 0.00 -0.07 5.79 -106.60 -0.62 -0.69 16 16 C -0.11 -1.78 9.92 -40.96 -0.41 -2.18 16 17 C -0.22 -2.89 11.19 28.94 0.32 -2.57 16 18 S 0.08 0.93 23.32 -107.50 -2.51 -1.58 16 19 C -0.20 -2.82 10.73 29.41 0.32 -2.50 16 20 N -0.26 -5.81 12.49 33.43 0.42 -5.39 16 21 C 0.16 3.17 3.43 -66.82 -0.23 2.94 16 22 C -0.13 -2.34 6.42 -25.03 -0.16 -2.50 16 23 C -0.12 -1.89 6.91 -24.70 -0.17 -2.06 16 24 C -0.12 -1.90 6.83 -25.07 -0.17 -2.08 16 25 C -0.13 -2.43 6.15 -25.62 -0.16 -2.58 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.14 3.49 5.32 -51.93 -0.28 3.21 16 28 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 29 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.13 1.86 7.74 -52.48 -0.41 1.45 16 31 H 0.15 2.56 8.06 -52.49 -0.42 2.14 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.17 1.95 7.67 -52.48 -0.40 1.55 16 34 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 35 H 0.09 1.90 7.03 -51.93 -0.37 1.53 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -27.84 359.13 -10.82 -38.66 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.96 Total: 6.68 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.08 Total: -16.70 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.35 Total: -48.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.84 -10.82 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153395776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.491 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds