Wall clock time and date at job start Tue Mar 31 2020 11:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47201 * 299.99931 * 3 2 1 6 6 H 1.48497 * 109.47579 * 59.99734 * 3 2 1 7 7 C 1.38813 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00634 * 202.14714 * 7 2 1 9 9 N 1.36943 * 119.99927 * 22.14941 * 7 2 1 10 10 C 1.46500 * 119.99794 * 33.71292 * 9 7 2 11 11 N 1.46499 * 109.47124 * 95.49727 * 10 9 7 12 12 C 1.35027 * 125.92929 * 94.99738 * 11 10 9 13 13 C 1.35098 * 107.97139 * 179.73162 * 12 11 10 14 14 C 1.40833 * 107.85167 * 0.02562 * 13 12 11 15 15 C 1.48453 * 126.04207 * 179.97438 * 14 13 12 16 16 C 1.39336 * 122.75802 * 180.02562 * 15 14 13 17 17 C 1.33087 * 114.91101 * 179.97438 * 16 15 14 18 18 S 1.75825 * 109.90979 * 359.97438 * 17 16 15 19 19 C 1.34506 * 122.76036 * 359.70728 * 15 14 13 20 20 N 1.31608 * 107.92005 * 359.97438 * 14 13 12 21 21 C 1.46501 * 120.00076 * 213.71479 * 9 7 2 22 22 C 1.54265 * 110.03013 * 57.90873 * 21 9 7 23 23 C 1.54964 * 104.15844 * 217.13598 * 22 21 9 24 24 C 1.54891 * 102.77864 * 37.88583 * 23 22 21 25 25 C 1.53862 * 110.03064 * 300.68876 * 21 9 7 26 26 H 0.97003 * 119.98948 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47504 * 335.49214 * 10 9 7 28 28 H 1.09003 * 109.46901 * 215.49595 * 10 9 7 29 29 H 1.08002 * 126.01231 * 359.76352 * 12 11 10 30 30 H 1.08008 * 126.07556 * 179.97438 * 13 12 11 31 31 H 1.08001 * 122.54929 * 359.94908 * 16 15 14 32 32 H 1.07991 * 125.04723 * 179.97438 * 17 16 15 33 33 H 1.08003 * 125.22227 * 359.97438 * 19 15 14 34 34 H 1.09001 * 110.01196 * 179.29030 * 21 9 7 35 35 H 1.08998 * 110.49096 * 335.78266 * 22 21 9 36 36 H 1.08995 * 110.49100 * 98.42708 * 22 21 9 37 37 H 1.09003 * 110.72172 * 279.57513 * 23 22 21 38 38 H 1.08995 * 110.92661 * 156.29635 * 23 22 21 39 39 H 1.08993 * 110.48993 * 203.40957 * 24 23 22 40 40 H 1.09002 * 110.59499 * 80.81726 * 24 23 22 41 41 H 1.09002 * 110.03170 * 238.56894 * 25 21 9 42 42 H 1.09003 * 110.03754 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0304 -1.2367 0.3531 9 7 1.4013 -2.3445 -0.4461 10 6 0.4253 -2.2760 -1.5365 11 7 1.0927 -2.5646 -2.8082 12 6 1.1548 -3.7693 -3.4149 13 6 1.8491 -3.6219 -4.5644 14 6 2.2303 -2.2701 -4.6682 15 6 3.0106 -1.6652 -5.7768 16 6 3.3514 -0.3146 -5.8095 17 6 4.0535 0.0607 -6.8760 18 16 4.3293 -1.3210 -7.9278 19 6 3.4522 -2.3772 -6.8290 20 7 1.7724 -1.6378 -3.6086 21 6 1.7258 -3.6352 0.1665 22 6 1.4348 -3.5894 1.6808 23 6 2.5750 -4.4282 2.3114 24 6 3.8002 -4.0485 1.4431 25 6 3.2289 -3.9272 0.0152 26 1 -0.4849 0.8402 0.0004 27 1 -0.0095 -1.2771 -1.5728 28 1 -0.3629 -3.0092 -1.3652 29 1 0.7245 -4.6888 -3.0464 30 1 2.0729 -4.4022 -5.2768 31 1 3.0670 0.3756 -5.0290 32 1 4.4021 1.0648 -7.0671 33 1 3.2919 -3.4350 -6.9769 34 1 1.1423 -4.4277 -0.3020 35 1 1.4702 -2.5628 2.0452 36 1 0.4654 -4.0385 1.8967 37 1 2.3598 -5.4937 2.2309 38 1 2.7364 -4.1458 3.3517 39 1 4.5561 -4.8325 1.4863 40 1 4.2202 -3.0966 1.7681 41 1 3.3750 -4.8621 -0.5259 42 1 3.7169 -3.1090 -0.5143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153395776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:19 Heat of formation + Delta-G solvation = 112.960478 kcal Electronic energy + Delta-G solvation = -24382.395292 eV Core-core repulsion = 21069.586433 eV Total energy + Delta-G solvation = -3312.808859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78154 -39.43483 -38.59414 -36.24551 -33.61409 -32.29823 -30.86223 -30.29021 -29.40459 -28.34075 -27.24541 -25.16040 -24.07147 -21.92243 -21.53701 -21.36084 -20.81848 -19.45597 -18.74982 -18.31527 -17.56808 -17.00377 -16.52621 -16.04551 -15.95119 -15.73710 -14.91451 -14.79803 -14.52381 -14.41539 -14.09709 -13.87709 -13.83410 -13.30292 -13.25555 -13.13296 -13.01009 -12.83350 -12.59022 -12.27467 -12.06330 -11.96116 -11.84411 -11.82148 -11.77101 -11.40111 -11.29367 -11.24525 -10.63294 -10.56981 -9.67192 -9.43172 -8.87599 -8.83480 -8.04788 -5.53035 -0.02905 0.74748 0.98343 1.10313 1.33305 1.41002 1.47029 1.56603 2.03274 2.42832 2.61970 3.19839 3.48363 3.85075 3.90661 3.92575 3.99137 4.18198 4.23296 4.27300 4.46802 4.59739 4.63613 4.71044 4.81091 4.87121 4.88229 4.92337 4.93416 5.09923 5.13052 5.16012 5.19178 5.25622 5.27267 5.35304 5.43575 5.55156 5.62908 5.64618 5.72007 5.94697 6.30238 6.55735 6.99687 7.13149 7.69454 8.15532 8.99498 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.004359 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.342063 B = 6421.681981 C = 7495.255140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.048 0.952 9 N -0.567 5.567 10 C 0.353 3.647 11 N -0.358 5.358 12 C 0.044 3.956 13 C -0.276 4.276 14 C 0.084 3.916 15 C -0.046 4.046 16 C -0.144 4.144 17 C -0.214 4.214 18 S 0.158 5.842 19 C -0.193 4.193 20 N -0.323 5.323 21 C 0.159 3.841 22 C -0.126 4.126 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.125 4.125 26 H 0.255 0.745 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.197 0.803 30 H 0.167 0.833 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -10.062 -9.765 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.216 4.216 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.372 4.372 8 H 0.066 0.934 9 N -0.286 5.286 10 C 0.146 3.854 11 N -0.146 5.146 12 C -0.104 4.104 13 C -0.306 4.306 14 C -0.081 4.081 15 C -0.059 4.059 16 C -0.174 4.174 17 C -0.349 4.349 18 S 0.420 5.580 19 C -0.331 4.331 20 N -0.148 5.148 21 C 0.053 3.947 22 C -0.165 4.165 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.164 4.164 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.214 0.786 30 H 0.184 0.816 31 H 0.134 0.866 32 H 0.204 0.796 33 H 0.207 0.793 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.778 -8.964 -10.271 14.807 hybrid contribution -0.466 0.958 1.222 1.622 sum 5.312 -8.006 -9.049 13.198 Atomic orbital electron populations 1.69951 1.06153 1.26201 1.53067 1.25456 0.95565 1.00634 0.99897 0.85618 0.78856 0.81581 0.76807 1.20365 1.22208 1.21027 1.18830 0.94198 0.86497 1.37717 0.93403 1.44585 1.48016 1.03535 1.32447 1.21586 0.87581 1.03616 0.72573 1.51205 1.39958 1.05239 1.18238 1.23050 1.00902 0.91855 0.94578 1.21563 1.10962 0.96075 1.01979 1.20723 0.99937 0.93773 0.93712 1.17070 1.01345 0.93243 0.94292 1.20188 1.01559 0.95776 0.99888 1.25739 1.06180 1.04414 0.98598 1.83742 1.53456 0.97819 1.22948 1.25891 1.04802 1.04767 0.97677 1.77557 1.14529 1.18350 1.04347 1.21411 0.94110 0.86315 0.92868 1.22647 0.98120 0.99707 0.96021 1.22395 0.94053 0.99884 0.98428 1.22236 0.97949 1.00407 0.94638 1.22449 0.97084 0.99676 0.97229 0.93589 0.88380 0.89369 0.78649 0.81575 0.86567 0.79621 0.79293 0.91245 0.93502 0.92221 0.89853 0.91535 0.90382 0.93981 0.91533 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.22 11.32 21.65 0.25 -50.98 16 2 C -0.02 -0.97 4.92 84.86 0.42 -0.56 16 3 Si 0.94 46.50 29.61 68.60 2.03 48.53 16 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -12.94 7.65 84.03 0.64 -12.29 16 8 H 0.05 2.69 7.25 -2.91 -0.02 2.67 16 9 N -0.57 -26.47 2.64 -685.67 -1.81 -28.28 16 10 C 0.35 16.11 6.49 170.96 1.11 17.22 16 11 N -0.36 -15.34 3.85 -358.28 -1.38 -16.72 16 12 C 0.04 1.48 11.46 83.48 0.96 2.44 16 13 C -0.28 -9.05 10.32 22.18 0.23 -8.82 16 14 C 0.08 3.32 7.05 42.54 0.30 3.62 16 15 C -0.05 -1.54 5.79 -21.14 -0.12 -1.66 16 16 C -0.14 -4.82 9.92 21.38 0.21 -4.61 16 17 C -0.21 -5.41 11.19 66.66 0.75 -4.66 16 18 S 0.16 3.23 23.32 -56.49 -1.32 1.91 16 19 C -0.19 -4.88 10.73 66.97 0.72 -4.16 16 20 N -0.32 -15.24 12.49 -48.15 -0.60 -15.84 16 21 C 0.16 6.02 3.43 45.71 0.16 6.18 16 22 C -0.13 -4.55 6.42 31.69 0.20 -4.34 16 23 C -0.11 -3.11 6.91 31.91 0.22 -2.89 16 24 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 25 C -0.13 -4.48 6.15 31.32 0.19 -4.29 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.10 5.31 5.32 -2.38 -0.01 5.30 16 28 H 0.09 3.52 8.03 -2.39 -0.02 3.50 16 29 H 0.20 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.17 4.09 7.74 -2.91 -0.02 4.07 16 31 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.19 3.62 8.06 -2.92 -0.02 3.60 16 33 H 0.19 3.70 7.67 -2.91 -0.02 3.67 16 34 H 0.07 2.34 7.90 -2.39 -0.02 2.32 16 35 H 0.05 2.08 7.03 -2.39 -0.02 2.06 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.03 1.31 7.05 -2.39 -0.02 1.29 16 Total: -1.00 -65.88 359.13 4.38 -61.50 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.01 Total: 22.03 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 6.20 Total: -22.15 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.54 Total: -111.81 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.32 Total: 1.91 kcal Total: -65.88 4.38 -61.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153395776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.456 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds