Wall clock time and date at job start Tue Mar 31 2020 10:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48499 * 109.46974 * 239.99758 * 3 2 1 5 5 H 1.48496 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46997 * 120.00027 * 3 2 1 7 7 C 1.38692 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99805 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00251 * 185.39354 * 9 7 2 11 11 C 1.38831 * 120.15589 * 6.22242 * 10 9 7 12 12 C 1.38034 * 120.06805 * 179.97438 * 11 10 9 13 13 C 1.38572 * 120.39944 * 359.97438 * 12 11 10 14 14 C 1.37825 * 120.32583 * 359.71633 * 13 12 11 15 15 C 1.39658 * 119.91856 * 0.56364 * 14 13 12 16 16 C 1.47537 * 120.19926 * 179.71507 * 15 14 13 17 17 O 1.21596 * 119.99722 * 133.71420 * 16 15 14 18 18 N 1.34776 * 120.00270 * 313.71491 * 16 15 14 19 19 C 1.47148 * 125.59942 * 4.44534 * 18 16 15 20 20 C 1.54605 * 107.33235 * 180.93081 * 19 18 16 21 21 C 1.53583 * 102.76616 * 20.77018 * 20 19 18 22 22 C 1.52999 * 111.89206 * 87.05328 * 21 20 19 23 23 C 1.54854 * 103.48694 * 121.57054 * 22 21 20 24 24 O 1.44567 * 104.87325 * 23.73036 * 23 22 21 25 25 C 1.44794 * 105.55266 * 320.48467 * 24 23 22 26 26 C 1.47722 * 125.60488 * 184.13794 * 18 16 15 27 27 H 0.97001 * 120.00553 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97165 * 359.95177 * 11 10 9 29 29 H 1.08001 * 119.80168 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.83530 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.04141 * 180.27771 * 14 13 12 32 32 H 1.08998 * 109.87137 * 300.36065 * 19 18 16 33 33 H 1.08998 * 109.87169 * 61.49233 * 19 18 16 34 34 H 1.08996 * 110.75467 * 139.09325 * 20 19 18 35 35 H 1.09007 * 110.75100 * 262.45204 * 20 19 18 36 36 H 1.08999 * 110.61937 * 240.07551 * 22 21 20 37 37 H 1.09009 * 110.61380 * 2.91773 * 22 21 20 38 38 H 1.09008 * 110.36004 * 142.57702 * 23 22 21 39 39 H 1.09000 * 110.36306 * 264.77131 * 23 22 21 40 40 H 1.09002 * 110.44050 * 280.26595 * 25 24 23 41 41 H 1.09002 * 110.43866 * 157.74335 * 25 24 23 42 42 H 1.09007 * 110.39193 * 276.31784 * 26 18 16 43 43 H 1.09001 * 110.39726 * 38.71438 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2010 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0681 -3.5025 0.1146 11 6 3.4337 -3.4287 0.3540 12 6 4.1789 -4.5848 0.4703 13 6 3.5725 -5.8250 0.3501 14 6 2.2170 -5.9174 0.1188 15 6 1.4511 -4.7563 -0.0071 16 6 0.0006 -4.8480 -0.2610 17 8 -0.7734 -4.1645 0.3811 18 7 -0.4665 -5.6892 -1.2047 19 6 0.3452 -6.6356 -1.9862 20 6 -0.6090 -7.3684 -2.9572 21 6 -1.8129 -6.4176 -3.0320 22 6 -1.6281 -5.3468 -4.1091 23 6 -2.8442 -5.5609 -5.0436 24 8 -3.8359 -6.2135 -4.2185 25 6 -3.1012 -7.1555 -3.4003 26 6 -1.8784 -5.8173 -1.6199 27 1 -0.4851 0.8400 0.0004 28 1 3.9135 -2.4659 0.4489 29 1 5.2409 -4.5224 0.6561 30 1 4.1642 -6.7236 0.4432 31 1 1.7484 -6.8864 0.0304 32 1 1.1043 -6.0943 -2.5509 33 1 0.8198 -7.3554 -1.3194 34 1 -0.1475 -7.4850 -3.9377 35 1 -0.9053 -8.3356 -2.5511 36 1 -1.6536 -4.3504 -3.6680 37 1 -0.6940 -5.5027 -4.6489 38 1 -3.2203 -4.6027 -5.4022 39 1 -2.5691 -6.1981 -5.8841 40 1 -2.8741 -8.0573 -3.9689 41 1 -3.6680 -7.4029 -2.5027 42 1 -2.4137 -6.4851 -0.9449 43 1 -2.3570 -4.8384 -1.6459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154534347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:38 Heat of formation + Delta-G solvation = -67.734237 kcal Electronic energy + Delta-G solvation = -27073.634676 eV Core-core repulsion = 23277.944685 eV Total energy + Delta-G solvation = -3795.689992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68429 -39.41044 -38.10767 -36.41104 -36.34380 -32.48437 -32.36206 -30.53298 -29.96113 -29.24729 -28.97466 -25.99086 -25.32370 -23.42895 -22.87402 -22.09517 -21.50754 -19.59563 -19.31220 -18.07462 -17.22890 -16.40043 -16.36461 -15.79082 -15.37225 -15.19893 -15.09120 -14.68129 -14.44710 -14.08333 -13.98942 -13.65835 -13.45877 -13.10113 -12.79601 -12.68028 -12.59994 -12.45527 -11.90627 -11.84229 -11.72999 -11.48765 -11.36628 -11.14872 -10.98289 -10.91074 -10.76460 -10.75011 -10.59384 -10.44709 -9.87962 -9.64621 -9.02606 -8.89511 -8.31167 -8.18523 -7.34443 -6.47222 -4.08192 1.78694 2.28628 3.10138 3.12234 3.15068 3.33559 3.57311 3.79172 3.91733 4.27360 4.37125 4.49322 4.53151 4.90679 4.96088 5.03154 5.04047 5.08303 5.16348 5.26032 5.37636 5.48366 5.49417 5.55636 5.61880 5.63702 5.68910 5.74634 5.79073 5.91985 5.94892 6.01760 6.08982 6.10617 6.15056 6.53467 6.58561 6.65496 6.75465 6.93703 7.03772 7.23237 7.26621 7.66617 7.90046 8.01487 8.90836 8.94628 9.62949 10.67810 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.004406 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.433755 B = 6354.008294 C = 7919.380594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.402 4.402 8 H 0.093 0.907 9 O -0.145 6.145 10 C 0.188 3.812 11 C -0.235 4.235 12 C -0.055 4.055 13 C -0.225 4.225 14 C -0.044 4.044 15 C -0.215 4.215 16 C 0.588 3.412 17 O -0.512 6.512 18 N -0.625 5.625 19 C 0.104 3.896 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.140 4.140 23 C 0.046 3.954 24 O -0.376 6.376 25 C 0.063 3.937 26 C 0.127 3.873 27 H 0.273 0.727 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -14.716 -8.484 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.111 0.889 9 O -0.045 6.045 10 C 0.130 3.870 11 C -0.254 4.254 12 C -0.073 4.073 13 C -0.244 4.244 14 C -0.063 4.063 15 C -0.220 4.220 16 C 0.378 3.622 17 O -0.386 6.386 18 N -0.362 5.362 19 C -0.019 4.019 20 C -0.156 4.156 21 C -0.109 4.109 22 C -0.178 4.178 23 C -0.031 4.031 24 O -0.295 6.295 25 C -0.014 4.014 26 C 0.004 3.996 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.156 -13.959 -8.072 16.126 hybrid contribution 0.941 0.741 0.043 1.199 sum 0.785 -13.218 -8.028 15.485 Atomic orbital electron populations 1.70079 1.06015 1.27975 1.43315 1.25367 0.95811 0.98953 0.96159 0.85785 0.78767 0.79643 0.79258 1.19388 1.20145 1.19335 1.21369 0.91794 0.80845 1.53728 0.88920 1.84060 1.33939 1.11284 1.75202 1.19200 0.90040 0.86996 0.90738 1.21135 0.93827 0.99308 1.11125 1.20893 0.98563 0.92286 0.95569 1.20469 0.94508 0.96928 1.12529 1.20827 0.93522 0.95735 0.96218 1.18684 0.92547 0.92014 1.18724 1.17882 0.88222 0.77736 0.78333 1.90838 1.58305 1.42083 1.47377 1.48460 1.07780 1.40281 1.39680 1.22127 0.94277 0.91898 0.93582 1.22562 0.94899 0.97992 1.00125 1.22108 0.96138 0.96351 0.96265 1.22832 0.98980 0.99952 0.96032 1.23517 0.88386 0.97830 0.93337 1.89193 1.30699 1.55078 1.54528 1.23209 0.90946 0.91956 0.95310 1.22009 0.83911 1.01583 0.92071 0.91742 0.85053 0.87158 0.87222 0.86597 0.91257 0.91305 0.89818 0.90277 0.89716 0.90034 0.89051 0.92363 0.91712 0.88736 0.91735 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.43 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.40 -11.34 9.44 30.90 0.29 -11.05 16 8 H 0.09 2.37 5.31 -52.48 -0.28 2.09 16 9 O -0.15 -4.28 8.72 -11.13 -0.10 -4.38 16 10 C 0.19 4.68 6.63 -38.60 -0.26 4.43 16 11 C -0.23 -5.03 9.12 -39.44 -0.36 -5.39 16 12 C -0.05 -0.96 10.03 -39.53 -0.40 -1.35 16 13 C -0.23 -3.67 10.02 -39.61 -0.40 -4.07 16 14 C -0.04 -0.78 8.52 -39.20 -0.33 -1.11 16 15 C -0.22 -4.73 5.45 -104.81 -0.57 -5.30 16 16 C 0.59 13.34 7.17 -12.47 -0.09 13.25 16 17 O -0.51 -14.18 16.72 -6.65 -0.11 -14.29 16 18 N -0.62 -10.79 3.34 -172.05 -0.57 -11.37 16 19 C 0.10 1.32 5.59 -2.84 -0.02 1.30 16 20 C -0.12 -1.09 5.77 -25.59 -0.15 -1.24 16 21 C -0.11 -1.21 0.81 -153.92 -0.13 -1.34 16 22 C -0.14 -1.64 6.36 -25.75 -0.16 -1.81 16 23 C 0.05 0.48 7.67 38.13 0.29 0.78 16 24 O -0.38 -4.72 11.66 -35.23 -0.41 -5.13 16 25 C 0.06 0.63 6.81 37.14 0.25 0.88 16 26 C 0.13 1.92 5.80 -3.07 -0.02 1.90 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.66 5.83 -52.49 -0.31 1.35 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.77 5.91 -51.93 -0.31 0.47 16 34 H 0.08 0.64 7.71 -51.93 -0.40 0.24 16 35 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 37 H 0.08 0.84 7.53 -51.92 -0.39 0.45 16 38 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 41 H 0.09 0.88 7.62 -51.93 -0.40 0.49 16 42 H 0.06 0.90 7.77 -51.93 -0.40 0.49 16 43 H 0.08 1.46 7.73 -51.93 -0.40 1.06 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -35.37 349.21 -7.98 -43.36 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.66 Total: 4.71 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.13 Total: -8.99 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.18 Total: -36.04 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.62 Total: -23.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.37 -7.98 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154534347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.377 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds