Wall clock time and date at job start Tue Mar 31 2020 10:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48499 * 109.46974 * 239.99758 * 3 2 1 5 5 H 1.48496 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46997 * 120.00027 * 3 2 1 7 7 C 1.38692 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99805 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.35523 * 117.00251 * 185.39354 * 9 7 2 11 11 C 1.38831 * 120.15589 * 6.22242 * 10 9 7 12 12 C 1.38034 * 120.06805 * 179.97438 * 11 10 9 13 13 C 1.38572 * 120.39944 * 359.97438 * 12 11 10 14 14 C 1.37825 * 120.32583 * 359.71633 * 13 12 11 15 15 C 1.39658 * 119.91856 * 0.56364 * 14 13 12 16 16 C 1.47537 * 120.19926 * 179.71507 * 15 14 13 17 17 O 1.21596 * 119.99722 * 133.71420 * 16 15 14 18 18 N 1.34776 * 120.00270 * 313.71491 * 16 15 14 19 19 C 1.47148 * 125.59942 * 4.44534 * 18 16 15 20 20 C 1.54605 * 107.33235 * 180.93081 * 19 18 16 21 21 C 1.53583 * 102.76616 * 20.77018 * 20 19 18 22 22 C 1.52999 * 111.89206 * 87.05328 * 21 20 19 23 23 C 1.54854 * 103.48694 * 121.57054 * 22 21 20 24 24 O 1.44567 * 104.87325 * 23.73036 * 23 22 21 25 25 C 1.44794 * 105.55266 * 320.48467 * 24 23 22 26 26 C 1.47722 * 125.60488 * 184.13794 * 18 16 15 27 27 H 0.97001 * 120.00553 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97165 * 359.95177 * 11 10 9 29 29 H 1.08001 * 119.80168 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.83530 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.04141 * 180.27771 * 14 13 12 32 32 H 1.08998 * 109.87137 * 300.36065 * 19 18 16 33 33 H 1.08998 * 109.87169 * 61.49233 * 19 18 16 34 34 H 1.08996 * 110.75467 * 139.09325 * 20 19 18 35 35 H 1.09007 * 110.75100 * 262.45204 * 20 19 18 36 36 H 1.08999 * 110.61937 * 240.07551 * 22 21 20 37 37 H 1.09009 * 110.61380 * 2.91773 * 22 21 20 38 38 H 1.09008 * 110.36004 * 142.57702 * 23 22 21 39 39 H 1.09000 * 110.36306 * 264.77131 * 23 22 21 40 40 H 1.09002 * 110.44050 * 280.26595 * 25 24 23 41 41 H 1.09002 * 110.43866 * 157.74335 * 25 24 23 42 42 H 1.09007 * 110.39193 * 276.31784 * 26 18 16 43 43 H 1.09001 * 110.39726 * 38.71438 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2010 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0681 -3.5025 0.1146 11 6 3.4337 -3.4287 0.3540 12 6 4.1789 -4.5848 0.4703 13 6 3.5725 -5.8250 0.3501 14 6 2.2170 -5.9174 0.1188 15 6 1.4511 -4.7563 -0.0071 16 6 0.0006 -4.8480 -0.2610 17 8 -0.7734 -4.1645 0.3811 18 7 -0.4665 -5.6892 -1.2047 19 6 0.3452 -6.6356 -1.9862 20 6 -0.6090 -7.3684 -2.9572 21 6 -1.8129 -6.4176 -3.0320 22 6 -1.6281 -5.3468 -4.1091 23 6 -2.8442 -5.5609 -5.0436 24 8 -3.8359 -6.2135 -4.2185 25 6 -3.1012 -7.1555 -3.4003 26 6 -1.8784 -5.8173 -1.6199 27 1 -0.4851 0.8400 0.0004 28 1 3.9135 -2.4659 0.4489 29 1 5.2409 -4.5224 0.6561 30 1 4.1642 -6.7236 0.4432 31 1 1.7484 -6.8864 0.0304 32 1 1.1043 -6.0943 -2.5509 33 1 0.8198 -7.3554 -1.3194 34 1 -0.1475 -7.4850 -3.9377 35 1 -0.9053 -8.3356 -2.5511 36 1 -1.6536 -4.3504 -3.6680 37 1 -0.6940 -5.5027 -4.6489 38 1 -3.2203 -4.6027 -5.4022 39 1 -2.5691 -6.1981 -5.8841 40 1 -2.8741 -8.0573 -3.9689 41 1 -3.6680 -7.4029 -2.5027 42 1 -2.4137 -6.4851 -0.9449 43 1 -2.3570 -4.8384 -1.6459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154534347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:37 Heat of formation + Delta-G solvation = -93.383720 kcal Electronic energy + Delta-G solvation = -27074.746921 eV Core-core repulsion = 23277.944685 eV Total energy + Delta-G solvation = -3796.802237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86776 -40.94102 -39.67215 -38.06920 -37.73381 -34.37838 -33.77150 -31.98846 -30.95691 -30.61879 -30.27401 -27.56953 -26.99043 -24.70371 -23.76805 -23.39738 -23.16726 -20.84327 -20.59068 -19.93328 -18.81895 -18.02178 -17.38173 -16.96578 -16.76491 -16.54751 -16.36974 -16.07382 -15.96412 -15.64399 -15.43242 -15.12487 -14.89395 -14.63197 -14.27751 -13.99500 -13.80832 -13.58549 -13.52499 -13.06135 -13.02872 -12.93439 -12.70770 -12.53899 -12.41191 -12.34328 -12.17543 -11.85164 -11.65890 -11.55914 -11.47809 -10.86512 -10.84336 -10.66485 -9.88696 -9.62431 -9.07578 -8.49884 -6.21569 0.19704 0.68942 1.29637 1.42751 1.48142 1.74693 2.06953 2.13150 2.80092 2.95232 3.13054 3.24108 3.38847 3.45696 3.59464 3.83414 3.98188 4.04404 4.11158 4.21424 4.24069 4.28906 4.45922 4.51455 4.57382 4.58752 4.64061 4.71042 4.74739 4.81836 4.84390 4.91226 4.93601 4.97248 5.04128 5.08321 5.13237 5.20665 5.39101 5.49599 5.59021 5.67650 5.82898 5.92219 6.14690 6.49185 6.90596 7.23816 7.73795 8.71870 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.004406 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.433755 B = 6354.008294 C = 7919.380594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.024 4.024 3 Si 1.024 2.976 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.422 4.422 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.145 3.855 11 C -0.250 4.250 12 C -0.045 4.045 13 C -0.191 4.191 14 C -0.037 4.037 15 C -0.230 4.230 16 C 0.574 3.426 17 O -0.587 6.587 18 N -0.618 5.618 19 C 0.092 3.908 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.144 4.144 23 C 0.049 3.951 24 O -0.405 6.405 25 C 0.065 3.935 26 C 0.119 3.881 27 H 0.271 0.729 28 H 0.124 0.876 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.431 -19.437 -9.914 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.175 1.175 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.498 4.498 8 H 0.126 0.874 9 O -0.116 6.116 10 C 0.091 3.909 11 C -0.270 4.270 12 C -0.063 4.063 13 C -0.209 4.209 14 C -0.055 4.055 15 C -0.235 4.235 16 C 0.366 3.634 17 O -0.467 6.467 18 N -0.352 5.352 19 C -0.029 4.029 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.027 4.027 24 O -0.324 6.324 25 C -0.012 4.012 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.174 0.826 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.393 -18.798 -9.550 21.356 hybrid contribution -0.005 1.775 0.491 1.842 sum 3.388 -17.023 -9.059 19.578 Atomic orbital electron populations 1.70285 1.08526 1.28818 1.47608 1.26791 0.96725 1.03255 0.95481 0.84602 0.77322 0.73654 0.80272 1.17519 1.19887 1.17745 1.21936 0.92651 0.81440 1.53790 0.87448 1.84051 1.35800 1.12610 1.79177 1.19965 0.91812 0.87012 0.92116 1.21290 0.92719 1.01001 1.11961 1.21432 1.00515 0.91185 0.93127 1.21183 0.94048 0.98384 1.07271 1.21311 0.94123 0.95533 0.94521 1.19094 0.92627 0.92818 1.18944 1.18275 0.88544 0.77771 0.78851 1.90786 1.59939 1.45262 1.50683 1.48487 1.09472 1.39323 1.37949 1.22548 0.94706 0.91395 0.94301 1.22633 0.92377 0.97908 1.00871 1.22078 0.98574 0.96636 0.92800 1.22836 1.00783 0.97782 0.96751 1.23595 0.87208 0.98391 0.93550 1.89168 1.31983 1.55990 1.55264 1.23385 0.89640 0.92295 0.95835 1.22193 0.82807 0.99791 0.95578 0.91971 0.85839 0.82639 0.81552 0.82588 0.91901 0.88645 0.86714 0.86978 0.94459 0.88096 0.89680 0.89032 0.87924 0.88400 0.90299 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.88 13.67 21.62 0.30 -60.59 16 2 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 3 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.42 -25.79 9.44 67.93 0.64 -25.15 16 8 H 0.11 5.84 5.31 -2.91 -0.02 5.83 16 9 O -0.21 -13.75 8.72 -8.65 -0.08 -13.83 16 10 C 0.14 7.57 6.63 22.91 0.15 7.72 16 11 C -0.25 -10.75 9.12 22.36 0.20 -10.55 16 12 C -0.04 -1.37 10.03 22.30 0.22 -1.15 16 13 C -0.19 -5.05 10.02 22.25 0.22 -4.82 16 14 C -0.04 -1.15 8.52 22.52 0.19 -0.95 16 15 C -0.23 -10.34 5.45 -19.99 -0.11 -10.45 16 16 C 0.57 27.82 7.17 86.70 0.62 28.44 16 17 O -0.59 -36.03 16.72 7.39 0.12 -35.91 16 18 N -0.62 -21.90 3.34 -816.51 -2.73 -24.63 16 19 C 0.09 2.04 5.59 86.80 0.49 2.53 16 20 C -0.10 -1.39 5.77 31.34 0.18 -1.21 16 21 C -0.10 -2.11 0.81 -51.80 -0.04 -2.15 16 22 C -0.14 -3.38 6.36 31.23 0.20 -3.19 16 23 C 0.05 0.98 7.67 72.62 0.56 1.54 16 24 O -0.40 -9.77 11.66 -148.98 -1.74 -11.51 16 25 C 0.06 1.13 6.81 71.97 0.49 1.62 16 26 C 0.12 3.78 5.80 86.34 0.50 4.29 16 27 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 28 H 0.12 5.37 5.72 -2.91 -0.02 5.35 16 29 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.16 3.58 5.83 -2.91 -0.02 3.56 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.64 5.91 -2.39 -0.01 1.62 16 34 H 0.11 1.02 7.71 -2.39 -0.02 1.00 16 35 H 0.11 0.94 8.06 -2.38 -0.02 0.92 16 36 H 0.04 1.21 7.58 -2.39 -0.02 1.20 16 37 H 0.10 1.93 7.53 -2.38 -0.02 1.91 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.09 7.93 -2.39 -0.02 1.07 16 41 H 0.10 1.63 7.62 -2.39 -0.02 1.61 16 42 H 0.08 2.25 7.77 -2.38 -0.02 2.23 16 43 H 0.03 1.35 7.73 -2.39 -0.02 1.33 16 Total: -1.00 -93.92 349.21 3.93 -90.00 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.03 Total: 24.34 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 4.98 Total: -14.47 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.43 Total: -85.21 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -1.69 Total: -61.24 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -93.92 3.93 -90.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154534347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.386 kcal (2) G-P(sol) polarization free energy of solvation -93.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds