Wall clock time and date at job start Tue Mar 31 2020 10:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47191 * 300.00717 * 3 2 1 6 6 H 1.48500 * 109.46815 * 60.00543 * 3 2 1 7 7 C 1.38698 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 179.97438 * 7 2 1 9 9 O 1.34820 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.35518 * 116.99698 * 185.38202 * 9 7 2 11 11 C 1.38831 * 120.16568 * 6.19368 * 10 9 7 12 12 C 1.38027 * 120.06955 * 180.30122 * 11 10 9 13 13 C 1.38571 * 120.40562 * 359.67512 * 12 11 10 14 14 C 1.37826 * 120.32053 * 0.02773 * 13 12 11 15 15 C 1.39668 * 119.91937 * 359.97438 * 14 13 12 16 16 C 1.47541 * 120.19480 * 180.02562 * 15 14 13 17 17 O 1.21594 * 119.99656 * 226.30292 * 16 15 14 18 18 N 1.34778 * 120.00013 * 46.30537 * 16 15 14 19 19 C 1.47151 * 125.60333 * 355.86553 * 18 16 15 20 20 C 1.54599 * 107.33366 * 179.07734 * 19 18 16 21 21 C 1.53595 * 102.76897 * 339.22711 * 20 19 18 22 22 C 1.52997 * 111.89408 * 272.92013 * 21 20 19 23 23 C 1.54861 * 103.48407 * 237.56834 * 22 21 20 24 24 O 1.44862 * 104.91624 * 23.70461 * 23 22 21 25 25 C 1.44800 * 105.39414 * 320.51965 * 24 23 22 26 26 C 1.47724 * 125.60173 * 175.86184 * 18 16 15 27 27 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.96411 * 0.02562 * 11 10 9 29 29 H 1.08009 * 119.79870 * 179.70219 * 12 11 10 30 30 H 1.07997 * 119.84075 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.03716 * 180.02562 * 14 13 12 32 32 H 1.08997 * 109.87031 * 59.63348 * 19 18 16 33 33 H 1.09002 * 109.86903 * 298.51003 * 19 18 16 34 34 H 1.09002 * 110.74998 * 220.91176 * 20 19 18 35 35 H 1.08996 * 110.75722 * 97.55028 * 20 19 18 36 36 H 1.09007 * 110.61416 * 356.06106 * 22 21 20 37 37 H 1.08992 * 110.62108 * 118.90924 * 22 21 20 38 38 H 1.09004 * 110.35934 * 142.55204 * 23 22 21 39 39 H 1.09002 * 110.35860 * 264.84675 * 23 22 21 40 40 H 1.09005 * 110.43531 * 280.20612 * 25 24 23 41 41 H 1.08995 * 110.43977 * 157.81542 * 25 24 23 42 42 H 1.09004 * 110.39374 * 83.66726 * 26 18 16 43 43 H 1.09000 * 110.39448 * 321.27022 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0086 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3688 -0.0005 10 6 2.0680 -3.5026 0.1122 11 6 3.4339 -3.4292 0.3497 12 6 4.1802 -4.5852 0.4580 13 6 3.5737 -5.8254 0.3377 14 6 2.2179 -5.9175 0.1079 15 6 1.4498 -4.7564 -0.0040 16 6 -0.0022 -4.8479 -0.2494 17 8 -0.5205 -4.1485 -1.0983 18 7 -0.7539 -5.7067 0.4674 19 6 -0.2462 -6.6675 1.4596 20 6 -1.4665 -7.4185 2.0400 21 6 -2.6317 -6.4695 1.7224 22 6 -2.8272 -5.4195 2.8179 23 6 -4.2925 -5.6369 3.2691 24 8 -4.5939 -7.0075 2.9097 25 6 -3.9636 -7.2149 1.6227 26 6 -2.2231 -5.8382 0.3861 27 1 -0.4850 0.8401 0.0004 28 1 3.9138 -2.4664 0.4454 29 1 5.2434 -4.5229 0.6380 30 1 4.1663 -6.7241 0.4244 31 1 1.7499 -6.8864 0.0153 32 1 0.2755 -6.1368 2.2559 33 1 0.4295 -7.3747 0.9784 34 1 -1.3607 -7.5534 3.1164 35 1 -1.6028 -8.3779 1.5410 36 1 -2.1404 -5.5962 3.6458 37 1 -2.6917 -4.4155 2.4159 38 1 -4.3819 -5.4994 4.3467 39 1 -4.9571 -4.9521 2.7423 40 1 -4.5770 -6.7935 0.8262 41 1 -3.7932 -8.2773 1.4491 42 1 -2.5009 -6.4897 -0.4425 43 1 -2.6864 -4.8582 0.2717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154534434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:41 Heat of formation + Delta-G solvation = -68.503838 kcal Electronic energy + Delta-G solvation = -27052.805584 eV Core-core repulsion = 23257.082220 eV Total energy + Delta-G solvation = -3795.723364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68627 -39.41920 -38.11991 -36.41081 -36.34975 -32.46762 -32.37297 -30.50614 -30.05675 -29.24569 -28.98484 -25.92802 -25.32448 -23.51839 -22.80508 -22.12609 -21.51539 -19.58765 -19.31000 -18.09191 -17.26395 -16.41115 -16.26859 -15.84784 -15.50065 -15.13146 -15.04338 -14.70079 -14.56674 -14.04944 -13.83004 -13.68989 -13.45641 -13.08489 -12.91298 -12.65264 -12.55496 -12.37051 -12.15999 -11.82404 -11.74169 -11.40417 -11.37261 -11.14569 -11.03692 -10.91254 -10.81186 -10.71723 -10.55898 -10.44291 -9.84931 -9.64587 -9.07965 -8.90207 -8.32333 -8.19895 -7.35494 -6.50075 -4.09286 1.77630 2.27539 3.09554 3.10334 3.16327 3.31638 3.55782 3.78234 3.90621 4.25857 4.37312 4.48620 4.57134 4.92389 4.97119 5.04698 5.06137 5.08544 5.17450 5.26532 5.40536 5.46402 5.50559 5.54600 5.62080 5.68310 5.71763 5.76259 5.79927 5.85902 5.97481 5.98888 6.07654 6.10884 6.14408 6.52182 6.57533 6.61934 6.73970 6.93122 7.03304 7.22376 7.26068 7.65718 7.88665 7.99530 8.88509 8.92980 9.61370 10.65785 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.004285 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.386082 B = 6532.880535 C = 8054.102708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.398 4.398 8 H 0.095 0.905 9 O -0.147 6.147 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.054 4.054 13 C -0.225 4.225 14 C -0.044 4.044 15 C -0.215 4.215 16 C 0.589 3.411 17 O -0.514 6.514 18 N -0.624 5.624 19 C 0.104 3.896 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.140 4.140 23 C 0.045 3.955 24 O -0.378 6.378 25 C 0.063 3.937 26 C 0.125 3.875 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -13.712 6.026 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.112 0.888 9 O -0.047 6.047 10 C 0.131 3.869 11 C -0.254 4.254 12 C -0.073 4.073 13 C -0.244 4.244 14 C -0.063 4.063 15 C -0.220 4.220 16 C 0.380 3.620 17 O -0.389 6.389 18 N -0.361 5.361 19 C -0.020 4.020 20 C -0.153 4.153 21 C -0.109 4.109 22 C -0.178 4.178 23 C -0.032 4.032 24 O -0.297 6.297 25 C -0.014 4.014 26 C 0.002 3.998 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.062 -13.148 5.589 14.611 hybrid contribution 0.782 0.973 -0.056 1.250 sum -2.281 -12.174 5.532 13.566 Atomic orbital electron populations 1.70084 1.06051 1.27735 1.43850 1.25363 0.95829 0.98973 0.96157 0.85632 0.79185 0.80161 0.78362 1.18944 1.19971 1.20039 1.21468 0.91883 0.80768 1.53216 0.88794 1.84041 1.34082 1.11350 1.75179 1.19210 0.90064 0.86952 0.90718 1.21141 0.93816 0.99322 1.11126 1.20896 0.98543 0.92282 0.95569 1.20476 0.94559 0.96947 1.12399 1.20836 0.93844 0.95733 0.95871 1.18682 0.92443 0.91997 1.18861 1.17873 0.86206 0.77757 0.80165 1.90821 1.73738 1.41865 1.32444 1.48435 1.06566 1.39010 1.42069 1.22161 0.96320 0.91538 0.91954 1.22589 0.93157 0.97682 1.01853 1.22057 0.96254 0.96351 0.96190 1.22830 0.97070 0.99808 0.98075 1.23586 0.94937 0.83636 1.01024 1.89222 1.75468 1.29180 1.35819 1.23181 0.90927 1.00682 0.86636 1.21907 0.81726 1.01151 0.95011 0.91889 0.85034 0.87142 0.87196 0.86575 0.91265 0.91289 0.89742 0.90365 0.90188 0.89538 0.89119 0.92031 0.91726 0.88754 0.91690 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.40 -11.21 9.44 30.90 0.29 -10.91 16 8 H 0.09 2.42 5.31 -52.48 -0.28 2.14 16 9 O -0.15 -4.30 8.72 -11.14 -0.10 -4.40 16 10 C 0.19 4.66 6.63 -38.60 -0.26 4.41 16 11 C -0.23 -5.02 9.12 -39.44 -0.36 -5.38 16 12 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.22 -3.66 10.02 -39.61 -0.40 -4.06 16 14 C -0.04 -0.77 8.51 -39.20 -0.33 -1.10 16 15 C -0.22 -4.71 5.44 -104.81 -0.57 -5.28 16 16 C 0.59 13.23 7.17 -12.47 -0.09 13.14 16 17 O -0.51 -14.00 16.72 -6.65 -0.11 -14.11 16 18 N -0.62 -10.68 3.34 -172.20 -0.58 -11.25 16 19 C 0.10 1.33 5.61 -2.85 -0.02 1.32 16 20 C -0.12 -1.15 5.87 -25.58 -0.15 -1.30 16 21 C -0.11 -1.22 0.81 -154.05 -0.13 -1.35 16 22 C -0.14 -1.66 6.36 -25.75 -0.16 -1.82 16 23 C 0.04 0.48 7.68 38.14 0.29 0.77 16 24 O -0.38 -4.48 11.68 -35.23 -0.41 -4.89 16 25 C 0.06 0.64 6.79 37.14 0.25 0.89 16 26 C 0.12 1.82 5.70 -3.20 -0.02 1.80 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.13 2.78 5.72 -52.48 -0.30 2.48 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.66 5.84 -52.48 -0.31 1.36 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.79 5.90 -51.93 -0.31 0.48 16 34 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 35 H 0.08 0.65 7.75 -51.93 -0.40 0.25 16 36 H 0.08 0.90 7.53 -51.92 -0.39 0.51 16 37 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 41 H 0.09 0.79 7.61 -51.93 -0.40 0.40 16 42 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 43 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -34.75 349.17 -7.99 -42.74 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.65 Total: 4.77 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.14 Total: -9.12 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.18 Total: -35.70 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.62 Total: -23.40 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.75 -7.99 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154534434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.769 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds