Wall clock time and date at job start Tue Mar 31 2020 10:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47191 * 300.00717 * 3 2 1 6 6 H 1.48500 * 109.46815 * 60.00543 * 3 2 1 7 7 C 1.38698 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 179.97438 * 7 2 1 9 9 O 1.34820 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.35518 * 116.99698 * 185.38202 * 9 7 2 11 11 C 1.38831 * 120.16568 * 6.19368 * 10 9 7 12 12 C 1.38027 * 120.06955 * 180.30122 * 11 10 9 13 13 C 1.38571 * 120.40562 * 359.67512 * 12 11 10 14 14 C 1.37826 * 120.32053 * 0.02773 * 13 12 11 15 15 C 1.39668 * 119.91937 * 359.97438 * 14 13 12 16 16 C 1.47541 * 120.19480 * 180.02562 * 15 14 13 17 17 O 1.21594 * 119.99656 * 226.30292 * 16 15 14 18 18 N 1.34778 * 120.00013 * 46.30537 * 16 15 14 19 19 C 1.47151 * 125.60333 * 355.86553 * 18 16 15 20 20 C 1.54599 * 107.33366 * 179.07734 * 19 18 16 21 21 C 1.53595 * 102.76897 * 339.22711 * 20 19 18 22 22 C 1.52997 * 111.89408 * 272.92013 * 21 20 19 23 23 C 1.54861 * 103.48407 * 237.56834 * 22 21 20 24 24 O 1.44862 * 104.91624 * 23.70461 * 23 22 21 25 25 C 1.44800 * 105.39414 * 320.51965 * 24 23 22 26 26 C 1.47724 * 125.60173 * 175.86184 * 18 16 15 27 27 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.96411 * 0.02562 * 11 10 9 29 29 H 1.08009 * 119.79870 * 179.70219 * 12 11 10 30 30 H 1.07997 * 119.84075 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.03716 * 180.02562 * 14 13 12 32 32 H 1.08997 * 109.87031 * 59.63348 * 19 18 16 33 33 H 1.09002 * 109.86903 * 298.51003 * 19 18 16 34 34 H 1.09002 * 110.74998 * 220.91176 * 20 19 18 35 35 H 1.08996 * 110.75722 * 97.55028 * 20 19 18 36 36 H 1.09007 * 110.61416 * 356.06106 * 22 21 20 37 37 H 1.08992 * 110.62108 * 118.90924 * 22 21 20 38 38 H 1.09004 * 110.35934 * 142.55204 * 23 22 21 39 39 H 1.09002 * 110.35860 * 264.84675 * 23 22 21 40 40 H 1.09005 * 110.43531 * 280.20612 * 25 24 23 41 41 H 1.08995 * 110.43977 * 157.81542 * 25 24 23 42 42 H 1.09004 * 110.39374 * 83.66726 * 26 18 16 43 43 H 1.09000 * 110.39448 * 321.27022 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0086 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3688 -0.0005 10 6 2.0680 -3.5026 0.1122 11 6 3.4339 -3.4292 0.3497 12 6 4.1802 -4.5852 0.4580 13 6 3.5737 -5.8254 0.3377 14 6 2.2179 -5.9175 0.1079 15 6 1.4498 -4.7564 -0.0040 16 6 -0.0022 -4.8479 -0.2494 17 8 -0.5205 -4.1485 -1.0983 18 7 -0.7539 -5.7067 0.4674 19 6 -0.2462 -6.6675 1.4596 20 6 -1.4665 -7.4185 2.0400 21 6 -2.6317 -6.4695 1.7224 22 6 -2.8272 -5.4195 2.8179 23 6 -4.2925 -5.6369 3.2691 24 8 -4.5939 -7.0075 2.9097 25 6 -3.9636 -7.2149 1.6227 26 6 -2.2231 -5.8382 0.3861 27 1 -0.4850 0.8401 0.0004 28 1 3.9138 -2.4664 0.4454 29 1 5.2434 -4.5229 0.6380 30 1 4.1663 -6.7241 0.4244 31 1 1.7499 -6.8864 0.0153 32 1 0.2755 -6.1368 2.2559 33 1 0.4295 -7.3747 0.9784 34 1 -1.3607 -7.5534 3.1164 35 1 -1.6028 -8.3779 1.5410 36 1 -2.1404 -5.5962 3.6458 37 1 -2.6917 -4.4155 2.4159 38 1 -4.3819 -5.4994 4.3467 39 1 -4.9571 -4.9521 2.7423 40 1 -4.5770 -6.7935 0.8262 41 1 -3.7932 -8.2773 1.4491 42 1 -2.5009 -6.4897 -0.4425 43 1 -2.6864 -4.8582 0.2717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154534434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:40 Heat of formation + Delta-G solvation = -92.975865 kcal Electronic energy + Delta-G solvation = -27053.866771 eV Core-core repulsion = 23257.082220 eV Total energy + Delta-G solvation = -3796.784551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87608 -40.94339 -39.67214 -38.06877 -37.72228 -34.37332 -33.74782 -31.95279 -31.08332 -30.62432 -30.27385 -27.55279 -26.92565 -24.76140 -23.77632 -23.42285 -23.16504 -20.82918 -20.60056 -19.93845 -18.84168 -18.00805 -17.32533 -17.01354 -16.79486 -16.59880 -16.34222 -16.10174 -15.93743 -15.56486 -15.52591 -15.15064 -14.89822 -14.54333 -14.21344 -14.02618 -13.80550 -13.62231 -13.56840 -13.21101 -13.06235 -12.87378 -12.68190 -12.57136 -12.36955 -12.31542 -12.11942 -11.97564 -11.65658 -11.57824 -11.46815 -10.89373 -10.78883 -10.72452 -9.88755 -9.62494 -9.07577 -8.51060 -6.20904 0.19562 0.68546 1.30374 1.40682 1.50313 1.74309 2.06464 2.13030 2.79604 2.88129 3.13557 3.28703 3.38729 3.44033 3.58166 3.83996 3.98643 3.99911 4.08365 4.18831 4.23260 4.28274 4.46928 4.49641 4.51257 4.57753 4.60690 4.67299 4.75563 4.80130 4.85849 4.88711 4.96286 4.99635 5.04524 5.07310 5.13636 5.16811 5.37975 5.49411 5.58935 5.67681 5.73929 5.92798 6.14358 6.47982 6.90727 7.23186 7.73177 8.71507 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.004285 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.386082 B = 6532.880535 C = 8054.102708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.420 4.420 8 H 0.107 0.893 9 O -0.212 6.212 10 C 0.145 3.855 11 C -0.251 4.251 12 C -0.045 4.045 13 C -0.191 4.191 14 C -0.037 4.037 15 C -0.231 4.231 16 C 0.577 3.423 17 O -0.585 6.585 18 N -0.618 5.618 19 C 0.094 3.906 20 C -0.101 4.101 21 C -0.100 4.100 22 C -0.144 4.144 23 C 0.048 3.952 24 O -0.386 6.386 25 C 0.065 3.935 26 C 0.119 3.881 27 H 0.272 0.728 28 H 0.124 0.876 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -17.972 7.495 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.221 4.221 3 Si 0.842 3.158 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.124 0.876 9 O -0.116 6.116 10 C 0.092 3.908 11 C -0.270 4.270 12 C -0.063 4.063 13 C -0.210 4.210 14 C -0.055 4.055 15 C -0.235 4.235 16 C 0.368 3.632 17 O -0.465 6.465 18 N -0.352 5.352 19 C -0.028 4.028 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.181 4.181 23 C -0.028 4.028 24 O -0.305 6.305 25 C -0.011 4.011 26 C -0.004 4.004 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.174 0.826 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.433 -17.522 7.110 18.915 hybrid contribution 0.099 1.872 -0.475 1.933 sum -0.334 -15.650 6.636 17.002 Atomic orbital electron populations 1.70266 1.08421 1.28683 1.47835 1.26744 0.96771 1.03116 0.95515 0.84483 0.78456 0.74366 0.78545 1.16786 1.19632 1.19042 1.21996 0.92642 0.81423 1.53472 0.87583 1.84024 1.35831 1.12605 1.79124 1.19953 0.91771 0.86985 0.92108 1.21290 0.92762 1.00951 1.11973 1.21426 1.00468 0.91202 0.93191 1.21180 0.94103 0.98377 1.07296 1.21315 0.94426 0.95572 0.94228 1.19096 0.92780 0.92740 1.18882 1.18211 0.87105 0.77834 0.80025 1.90771 1.74993 1.44837 1.35853 1.48451 1.07516 1.38043 1.41172 1.22518 0.98307 0.91033 0.90900 1.22643 0.90108 0.97848 1.03248 1.22016 0.98048 0.96446 0.93606 1.22816 0.98514 0.98229 0.98572 1.23593 0.93728 0.83462 1.02055 1.89216 1.75663 1.29221 1.36444 1.23290 0.89640 1.02090 0.86120 1.22077 0.80281 0.99980 0.98043 0.91944 0.85862 0.82700 0.81645 0.82637 0.92168 0.88604 0.87789 0.87154 0.89285 0.93151 0.87389 0.92337 0.91742 0.85799 0.89863 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.70 13.67 21.62 0.30 -59.41 16 2 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 3 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 4 H -0.24 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.42 -25.47 9.44 67.93 0.64 -24.83 16 8 H 0.11 5.80 5.31 -2.91 -0.02 5.78 16 9 O -0.21 -13.55 8.72 -8.69 -0.08 -13.63 16 10 C 0.15 7.55 6.63 22.91 0.15 7.70 16 11 C -0.25 -10.72 9.12 22.36 0.20 -10.51 16 12 C -0.04 -1.39 10.03 22.30 0.22 -1.16 16 13 C -0.19 -5.10 10.02 22.25 0.22 -4.87 16 14 C -0.04 -1.16 8.51 22.52 0.19 -0.97 16 15 C -0.23 -10.25 5.44 -19.98 -0.11 -10.36 16 16 C 0.58 27.37 7.17 86.70 0.62 27.99 16 17 O -0.58 -34.86 16.72 7.40 0.12 -34.73 16 18 N -0.62 -21.48 3.34 -816.97 -2.73 -24.21 16 19 C 0.09 2.17 5.61 86.80 0.49 2.65 16 20 C -0.10 -1.62 5.87 31.34 0.18 -1.43 16 21 C -0.10 -2.15 0.81 -51.88 -0.04 -2.19 16 22 C -0.14 -3.45 6.36 31.23 0.20 -3.25 16 23 C 0.05 1.00 7.68 72.62 0.56 1.55 16 24 O -0.39 -8.30 11.68 -148.98 -1.74 -10.04 16 25 C 0.07 1.16 6.79 71.97 0.49 1.65 16 26 C 0.12 3.57 5.70 86.26 0.49 4.06 16 27 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 28 H 0.12 5.35 5.72 -2.91 -0.02 5.34 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.16 3.59 5.84 -2.91 -0.02 3.57 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.71 5.90 -2.39 -0.01 1.70 16 34 H 0.10 1.37 7.70 -2.39 -0.02 1.35 16 35 H 0.11 1.16 7.75 -2.39 -0.02 1.14 16 36 H 0.09 1.94 7.53 -2.38 -0.02 1.92 16 37 H 0.05 1.57 7.56 -2.39 -0.02 1.55 16 38 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.16 7.94 -2.38 -0.02 1.14 16 41 H 0.12 1.52 7.61 -2.39 -0.02 1.50 16 42 H 0.08 2.19 8.06 -2.39 -0.02 2.17 16 43 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 Total: -1.00 -89.32 349.17 3.92 -85.41 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 1.03 Total: 25.14 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.98 Total: -14.88 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.43 Total: -83.62 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.69 Total: -58.41 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -89.32 3.92 -85.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154534434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.568 kcal (2) G-P(sol) polarization free energy of solvation -89.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds