Wall clock time and date at job start Tue Mar 31 2020 11:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38278 * 119.94745 * 2 1 4 4 C 1.38124 * 120.05965 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.03078 * 179.97438 * 4 3 2 6 6 C 1.38754 * 119.94057 * 359.97438 * 4 3 2 7 7 O 1.35905 * 120.05453 * 180.02562 * 6 4 3 8 8 C 1.38715 * 119.89128 * 359.97438 * 6 4 3 9 9 C 1.50698 * 120.02889 * 179.97438 * 8 6 4 10 10 N 1.46905 * 109.46755 * 84.97571 * 9 8 6 11 11 C 1.46903 * 110.99935 * 292.87646 * 10 9 8 12 12 C 1.50700 * 109.46572 * 174.77766 * 11 10 9 13 13 H 1.07991 * 120.00614 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99616 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46927 * 89.99812 * 16 14 12 18 18 H 1.48500 * 109.46692 * 210.00068 * 16 14 12 19 19 H 1.48501 * 109.47179 * 329.99748 * 16 14 12 20 20 C 1.46897 * 110.99411 * 168.92867 * 10 9 8 21 21 C 1.52998 * 109.47198 * 286.63594 * 20 10 9 22 22 F 1.39897 * 109.47181 * 66.62503 * 21 20 10 23 23 F 1.39899 * 109.47808 * 186.62361 * 21 20 10 24 24 F 1.39905 * 109.47311 * 306.62493 * 21 20 10 25 25 C 1.38168 * 119.94078 * 0.25257 * 8 6 4 26 26 H 1.08996 * 109.46692 * 89.99821 * 1 2 3 27 27 H 1.09001 * 109.47020 * 209.99779 * 1 2 3 28 28 H 1.08998 * 109.46481 * 330.00072 * 1 2 3 29 29 H 1.07999 * 119.97217 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.47065 * 270.02451 * 5 4 3 31 31 H 1.08994 * 109.46751 * 30.02241 * 5 4 3 32 32 H 1.08990 * 109.46925 * 150.02690 * 5 4 3 33 33 H 0.96696 * 113.99884 * 269.98127 * 7 6 4 34 34 H 1.09000 * 109.46925 * 324.97664 * 9 8 6 35 35 H 1.08996 * 109.47172 * 204.97257 * 9 8 6 36 36 H 1.08998 * 109.47057 * 294.77638 * 11 10 9 37 37 H 1.08995 * 109.46879 * 54.77950 * 11 10 9 38 38 H 0.97001 * 120.00203 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47715 * 46.64122 * 20 10 9 40 40 H 1.09004 * 109.46968 * 166.64172 * 20 10 9 41 41 H 1.08003 * 119.96947 * 179.74969 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.3303 2.5071 0.0000 6 6 4.2735 -0.0001 0.0016 7 8 5.6325 -0.0002 0.0027 8 6 3.5787 -1.2008 0.0027 9 6 4.3303 -2.5070 0.0033 10 7 4.6801 -2.8699 1.3831 11 6 5.6593 -1.9287 1.9429 12 6 5.8966 -2.2552 3.3948 13 1 5.3722 -3.0791 3.8558 14 6 6.7825 -1.5014 4.1351 15 7 7.4200 -0.4971 3.5742 16 14 7.0761 -1.9056 5.9350 17 1 8.1934 -2.8772 6.0483 18 1 7.4236 -0.6634 6.6709 19 1 5.8446 -2.4974 6.5167 20 6 5.1767 -4.2506 1.4544 21 6 4.0082 -5.2225 1.2790 22 9 3.5010 -5.1125 -0.0201 23 9 4.4531 -6.5309 1.4965 24 9 3.0018 -4.9130 2.2003 25 6 2.1971 -1.1980 -0.0026 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5138 29 1 1.6561 2.1327 -0.0004 30 1 4.5115 2.8215 -1.0278 31 1 3.7401 3.2660 0.5134 32 1 5.2828 2.3783 0.5138 33 1 6.0265 -0.0009 -0.8804 34 1 5.2407 -2.4026 -0.5869 35 1 3.7039 -3.2868 -0.4298 36 1 6.5974 -2.0111 1.3939 37 1 5.2761 -0.9120 1.8570 38 1 8.0436 0.0330 4.0948 39 1 5.9080 -4.4151 0.6630 40 1 5.6463 -4.4182 2.4237 41 1 1.6557 -2.1325 -0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164429462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:07 Heat of formation + Delta-G solvation = -174.085469 kcal Electronic energy + Delta-G solvation = -28051.105944 eV Core-core repulsion = 23708.947477 eV Total energy + Delta-G solvation = -4342.158467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.64013 -47.25275 -46.99642 -39.87878 -36.83292 -36.38524 -32.91611 -32.49962 -31.77759 -28.81661 -27.67004 -26.70655 -25.81702 -24.42676 -22.83545 -21.33100 -20.45266 -19.80327 -18.10538 -18.00896 -17.82759 -16.90175 -16.43315 -15.77797 -15.22728 -14.96446 -14.46505 -14.16203 -14.03497 -13.91917 -13.74381 -13.54863 -13.40197 -13.28513 -13.26445 -13.11810 -13.01590 -12.82452 -12.45907 -12.18879 -12.09367 -11.88223 -11.57642 -11.43374 -11.25342 -11.01121 -10.89407 -10.86220 -10.67997 -10.35224 -9.93304 -9.80494 -9.12116 -8.42890 -8.31527 -7.93675 -7.46091 -5.99111 -4.02047 1.60843 1.68059 3.26117 3.32109 3.38947 3.43737 3.85825 4.31736 4.44179 4.54716 4.58679 4.67591 5.02467 5.06338 5.11746 5.27820 5.35882 5.50615 5.53760 5.65310 5.69890 5.74432 5.78177 5.84956 5.96956 6.00699 6.01753 6.13291 6.17364 6.38830 6.52760 6.76287 6.82554 6.95931 7.19390 7.22626 7.36099 7.74886 8.03155 8.13063 8.19545 8.47635 9.04627 9.61162 11.09816 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.006666 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.292499 B = 4199.509708 C = 6340.484567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.121 3.879 7 O -0.468 6.468 8 C -0.083 4.083 9 C 0.075 3.925 10 N -0.523 5.523 11 C 0.199 3.801 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.885 5.885 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.017 3.983 21 C 0.450 3.550 22 F -0.192 7.192 23 F -0.193 7.193 24 F -0.173 7.173 25 C -0.093 4.093 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.372 0.628 34 H 0.038 0.962 35 H 0.086 0.914 36 H -0.004 1.004 37 H 0.063 0.937 38 H 0.260 0.740 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 -0.450 -10.892 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.113 4.113 5 C -0.166 4.166 6 C 0.076 3.924 7 O -0.277 6.277 8 C -0.084 4.084 9 C -0.052 4.052 10 N -0.247 5.247 11 C 0.076 3.924 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.114 4.114 21 C 0.396 3.604 22 F -0.174 7.174 23 F -0.175 7.175 24 F -0.154 7.154 25 C -0.111 4.111 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.014 0.986 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.720 -0.279 -9.947 13.231 hybrid contribution 0.864 -0.353 0.114 0.940 sum -7.856 -0.632 -9.833 12.602 Atomic orbital electron populations 1.20713 0.91512 1.02553 1.01688 1.19776 0.95774 0.93039 1.01641 1.20679 0.92920 0.97300 1.02138 1.20144 0.93914 0.95153 1.02097 1.20643 1.01008 0.93391 1.01512 1.18123 0.83459 0.91057 0.99759 1.85232 1.15048 1.96154 1.31225 1.20006 0.93788 0.94340 1.00297 1.21334 0.98288 0.94324 0.91298 1.62150 1.45976 1.00240 1.16345 1.19919 0.87270 0.91654 0.93552 1.21207 1.23957 1.15619 0.95328 0.92098 1.24930 0.95897 0.95008 0.98236 1.69995 1.27437 1.18675 1.36216 0.86612 0.78516 0.77750 0.85259 1.20735 1.21248 1.19774 1.23188 0.91074 0.90156 1.06959 1.21067 0.85777 0.80502 0.73083 1.93013 1.89315 1.95432 1.39621 1.93132 1.89389 1.40353 1.94632 1.93183 1.63210 1.92739 1.66280 1.20714 0.92937 0.97382 1.00110 0.91730 0.91657 0.91907 0.86427 0.92007 0.92010 0.90354 0.77375 0.94419 0.89547 0.98589 0.91937 0.93066 0.91635 0.84993 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.10 -1.49 5.88 -104.60 -0.62 -2.10 16 3 C -0.11 -1.64 9.35 -39.61 -0.37 -2.01 16 4 C -0.11 -1.81 5.89 -104.47 -0.62 -2.43 16 5 C -0.11 -1.51 9.79 36.01 0.35 -1.16 16 6 C 0.12 2.16 5.42 -39.21 -0.21 1.95 16 7 O -0.47 -8.53 9.30 -19.44 -0.18 -8.72 16 8 C -0.08 -1.48 5.07 -104.47 -0.53 -2.01 16 9 C 0.07 1.34 4.77 -4.97 -0.02 1.32 16 10 N -0.52 -10.98 4.27 -237.52 -1.02 -12.00 16 11 C 0.20 5.03 3.50 -4.97 -0.02 5.01 16 12 C -0.52 -14.44 8.23 -34.44 -0.28 -14.72 16 13 H 0.06 1.67 6.94 -52.49 -0.36 1.30 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.93 13.29 55.43 0.74 -25.20 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.02 0.31 4.92 -3.83 -0.02 0.29 16 21 C 0.45 7.67 3.25 37.16 0.12 7.79 16 22 F -0.19 -3.07 14.46 2.25 0.03 -3.04 16 23 F -0.19 -3.13 17.32 2.25 0.04 -3.09 16 24 F -0.17 -3.24 17.12 2.25 0.04 -3.21 16 25 C -0.09 -1.50 9.33 -39.60 -0.37 -1.87 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 8.09 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.08 1.24 7.53 -51.93 -0.39 0.85 16 33 H 0.37 4.84 9.06 45.56 0.41 5.26 16 34 H 0.04 0.65 7.66 -51.93 -0.40 0.26 16 35 H 0.09 1.42 5.02 -51.93 -0.26 1.16 16 36 H 0.00 -0.10 8.11 -51.93 -0.42 -0.52 16 37 H 0.06 1.72 4.93 -51.93 -0.26 1.47 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 40 H 0.13 2.64 6.21 -51.93 -0.32 2.32 16 41 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -31.20 345.95 -6.98 -38.18 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.50 Total: 4.42 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.32 Total: -9.14 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.28 Total: -37.19 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.18 Total: -8.72 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 0.11 Total: -9.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.20 -6.98 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164429462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.903 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds