Wall clock time and date at job start Tue Mar 31 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38278 * 119.94745 * 2 1 4 4 C 1.38124 * 120.05965 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.03078 * 179.97438 * 4 3 2 6 6 C 1.38754 * 119.94057 * 359.97438 * 4 3 2 7 7 O 1.35905 * 120.05453 * 180.02562 * 6 4 3 8 8 C 1.38715 * 119.89128 * 359.97438 * 6 4 3 9 9 C 1.50698 * 120.02889 * 179.97438 * 8 6 4 10 10 N 1.46905 * 109.46755 * 84.97571 * 9 8 6 11 11 C 1.46903 * 110.99935 * 292.87646 * 10 9 8 12 12 C 1.50700 * 109.46572 * 174.77766 * 11 10 9 13 13 H 1.07991 * 120.00614 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99616 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99974 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46927 * 89.99812 * 16 14 12 18 18 H 1.48500 * 109.46692 * 210.00068 * 16 14 12 19 19 H 1.48501 * 109.47179 * 329.99748 * 16 14 12 20 20 C 1.46897 * 110.99411 * 168.92867 * 10 9 8 21 21 C 1.52998 * 109.47198 * 286.63594 * 20 10 9 22 22 F 1.39897 * 109.47181 * 66.62503 * 21 20 10 23 23 F 1.39899 * 109.47808 * 186.62361 * 21 20 10 24 24 F 1.39905 * 109.47311 * 306.62493 * 21 20 10 25 25 C 1.38168 * 119.94078 * 0.25257 * 8 6 4 26 26 H 1.08996 * 109.46692 * 89.99821 * 1 2 3 27 27 H 1.09001 * 109.47020 * 209.99779 * 1 2 3 28 28 H 1.08998 * 109.46481 * 330.00072 * 1 2 3 29 29 H 1.07999 * 119.97217 * 359.97438 * 3 2 1 30 30 H 1.08999 * 109.47065 * 270.02451 * 5 4 3 31 31 H 1.08994 * 109.46751 * 30.02241 * 5 4 3 32 32 H 1.08990 * 109.46925 * 150.02690 * 5 4 3 33 33 H 0.96696 * 113.99884 * 269.98127 * 7 6 4 34 34 H 1.09000 * 109.46925 * 324.97664 * 9 8 6 35 35 H 1.08996 * 109.47172 * 204.97257 * 9 8 6 36 36 H 1.08998 * 109.47057 * 294.77638 * 11 10 9 37 37 H 1.08995 * 109.46879 * 54.77950 * 11 10 9 38 38 H 0.97001 * 120.00203 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.47715 * 46.64122 * 20 10 9 40 40 H 1.09004 * 109.46968 * 166.64172 * 20 10 9 41 41 H 1.08003 * 119.96947 * 179.74969 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.3303 2.5071 0.0000 6 6 4.2735 -0.0001 0.0016 7 8 5.6325 -0.0002 0.0027 8 6 3.5787 -1.2008 0.0027 9 6 4.3303 -2.5070 0.0033 10 7 4.6801 -2.8699 1.3831 11 6 5.6593 -1.9287 1.9429 12 6 5.8966 -2.2552 3.3948 13 1 5.3722 -3.0791 3.8558 14 6 6.7825 -1.5014 4.1351 15 7 7.4200 -0.4971 3.5742 16 14 7.0761 -1.9056 5.9350 17 1 8.1934 -2.8772 6.0483 18 1 7.4236 -0.6634 6.6709 19 1 5.8446 -2.4974 6.5167 20 6 5.1767 -4.2506 1.4544 21 6 4.0082 -5.2225 1.2790 22 9 3.5010 -5.1125 -0.0201 23 9 4.4531 -6.5309 1.4965 24 9 3.0018 -4.9130 2.2003 25 6 2.1971 -1.1980 -0.0026 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5138 29 1 1.6561 2.1327 -0.0004 30 1 4.5115 2.8215 -1.0278 31 1 3.7401 3.2660 0.5134 32 1 5.2828 2.3783 0.5138 33 1 6.0265 -0.0009 -0.8804 34 1 5.2407 -2.4026 -0.5869 35 1 3.7039 -3.2868 -0.4298 36 1 6.5974 -2.0111 1.3939 37 1 5.2761 -0.9120 1.8570 38 1 8.0436 0.0330 4.0948 39 1 5.9080 -4.4151 0.6630 40 1 5.6463 -4.4182 2.4237 41 1 1.6557 -2.1325 -0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164429462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:06 Heat of formation + Delta-G solvation = -193.531735 kcal Electronic energy + Delta-G solvation = -28051.949197 eV Core-core repulsion = 23708.947477 eV Total energy + Delta-G solvation = -4343.001721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.03761 -48.61050 -48.43563 -41.14575 -38.37972 -37.71111 -34.77136 -33.90941 -33.04014 -30.46283 -29.22355 -27.98209 -26.95480 -26.06898 -24.50598 -22.88088 -21.64473 -21.25259 -19.53334 -19.41342 -19.14843 -18.57460 -18.17216 -17.13515 -16.72598 -16.54498 -16.09197 -15.65152 -15.37028 -15.34212 -15.07189 -14.91570 -14.76669 -14.70478 -14.66293 -14.51948 -14.22862 -13.91638 -13.81025 -13.57318 -13.45141 -13.31959 -13.29305 -12.86408 -12.75423 -12.61678 -12.38437 -12.24306 -12.14146 -12.00492 -11.72793 -11.22203 -11.07489 -10.55908 -9.57055 -9.23279 -9.06232 -8.13817 -6.23935 0.39217 0.45273 1.40050 1.41655 1.52278 1.81556 2.40650 2.60513 2.87351 3.10089 3.14884 3.19733 3.45852 3.71425 3.84463 3.92336 3.99996 4.21456 4.37782 4.45449 4.47842 4.57509 4.61393 4.72025 4.76221 4.80606 4.91853 4.99014 5.09585 5.25625 5.30201 5.38238 5.44411 5.56092 5.63638 5.66674 5.74916 6.05148 6.11179 6.19025 6.51722 6.91162 7.01158 7.43710 8.95011 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.006666 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.292499 B = 4199.509708 C = 6340.484567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.102 4.102 3 C -0.113 4.113 4 C -0.127 4.127 5 C -0.103 4.103 6 C 0.098 3.902 7 O -0.493 6.493 8 C -0.108 4.108 9 C 0.080 3.920 10 N -0.533 5.533 11 C 0.225 3.775 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.011 3.989 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.014 3.986 21 C 0.464 3.536 22 F -0.182 7.182 23 F -0.184 7.184 24 F -0.182 7.182 25 C -0.105 4.105 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.387 0.613 34 H 0.038 0.962 35 H 0.102 0.898 36 H -0.031 1.031 37 H 0.039 0.961 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 -0.557 -11.024 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.159 4.159 6 C 0.053 3.947 7 O -0.303 6.303 8 C -0.109 4.109 9 C -0.047 4.047 10 N -0.257 5.257 11 C 0.100 3.900 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.188 4.188 15 N -0.557 5.557 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.116 4.116 21 C 0.409 3.591 22 F -0.164 7.164 23 F -0.166 7.166 24 F -0.164 7.164 25 C -0.123 4.123 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.244 0.756 34 H 0.056 0.944 35 H 0.120 0.880 36 H -0.013 1.013 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.370 -0.408 -10.100 14.481 hybrid contribution 1.339 -0.318 0.073 1.378 sum -9.031 -0.727 -10.026 13.513 Atomic orbital electron populations 1.20774 0.88770 1.03395 1.03250 1.20204 0.97770 0.92348 0.99869 1.21047 0.92390 0.98684 1.00955 1.20474 0.94951 0.95331 1.01979 1.20617 0.99547 0.92908 1.02861 1.18384 0.83237 0.92009 1.01103 1.85170 1.15941 1.96286 1.32953 1.20128 0.94695 0.94115 1.01914 1.21355 0.98595 0.95284 0.89488 1.61993 1.44632 1.00599 1.18506 1.19390 0.86671 0.91553 0.92400 1.21557 1.23851 1.15472 0.96685 0.92299 1.25745 0.95706 0.94855 1.02513 1.70126 1.28090 1.19656 1.37828 0.85596 0.78622 0.77671 0.80031 1.19583 1.20999 1.19431 1.23152 0.92234 0.89378 1.06801 1.20598 0.84840 0.80379 0.73234 1.93028 1.89103 1.95398 1.38856 1.93152 1.89275 1.39549 1.94616 1.93168 1.63539 1.92877 1.66774 1.20924 0.92407 0.98626 1.00392 0.89685 0.91418 0.90489 0.83522 0.89615 0.90464 0.93151 0.75616 0.94422 0.87970 1.01342 0.94351 0.93033 0.89847 0.86607 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.77 5.88 -19.85 -0.12 -2.89 16 3 C -0.11 -3.09 9.35 22.25 0.21 -2.88 16 4 C -0.13 -4.04 5.89 -19.77 -0.12 -4.15 16 5 C -0.10 -2.80 9.79 71.24 0.70 -2.10 16 6 C 0.10 3.57 5.42 22.51 0.12 3.69 16 7 O -0.49 -18.93 9.30 -92.48 -0.86 -19.79 16 8 C -0.11 -3.86 5.07 -19.77 -0.10 -3.96 16 9 C 0.08 2.87 4.77 85.56 0.41 3.28 16 10 N -0.53 -22.68 4.27 -905.37 -3.87 -26.55 16 11 C 0.22 11.70 3.50 85.56 0.30 12.00 16 12 C -0.54 -30.25 8.23 25.60 0.21 -30.04 16 13 H 0.06 3.26 6.94 -2.92 -0.02 3.24 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.92 -55.00 13.29 21.45 0.28 -54.72 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 C 0.01 0.53 4.92 86.30 0.42 0.96 16 21 C 0.46 15.27 3.25 71.98 0.23 15.50 16 22 F -0.18 -5.51 14.46 44.97 0.65 -4.86 16 23 F -0.18 -5.67 17.32 44.97 0.78 -4.89 16 24 F -0.18 -6.66 17.12 44.97 0.77 -5.89 16 25 C -0.10 -3.30 9.33 22.26 0.21 -3.09 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 28 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 29 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 32 H 0.05 1.65 7.53 -2.39 -0.02 1.63 16 33 H 0.39 10.86 9.06 -74.06 -0.67 10.19 16 34 H 0.04 1.34 7.66 -2.39 -0.02 1.32 16 35 H 0.10 3.29 5.02 -2.39 -0.01 3.27 16 36 H -0.03 -1.76 8.11 -2.39 -0.02 -1.78 16 37 H 0.04 2.21 4.93 -2.39 -0.01 2.20 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.08 2.77 8.03 -2.39 -0.02 2.75 16 40 H 0.12 4.68 6.21 -2.38 -0.01 4.67 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -67.46 345.95 3.84 -63.63 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.40 Total: 20.36 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.65 Total: -13.90 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.59 Total: -81.27 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.86 Total: -19.79 kcal Atomic # 9 Polarization: -17.84 SS G_CDS: 2.20 Total: -15.64 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.46 3.84 -63.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164429462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.906 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds