Wall clock time and date at job start Tue Mar 31 2020 11:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00052 * 2 1 4 4 O 1.20829 * 119.99557 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00387 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.56083 * 329.44167 * 5 3 2 7 7 C 1.53005 * 117.50266 * 115.13727 * 5 3 2 8 8 C 1.53002 * 60.00105 * 107.49076 * 7 5 3 9 9 H 1.09003 * 117.50044 * 107.51567 * 8 7 5 10 10 C 1.50704 * 117.49758 * 252.51351 * 8 7 5 11 11 O 1.21288 * 119.99500 * 350.57508 * 10 8 7 12 12 N 1.34770 * 119.99866 * 170.57525 * 10 8 7 13 13 C 1.46500 * 120.00067 * 5.08768 * 12 10 8 14 14 C 1.50699 * 109.47200 * 84.75526 * 13 12 10 15 15 H 1.08000 * 120.00098 * 4.67623 * 14 13 12 16 16 C 1.37877 * 120.00090 * 184.67669 * 14 13 12 17 17 N 1.31519 * 119.99958 * 5.06494 * 16 14 13 18 18 Si 1.86800 * 120.00353 * 185.06862 * 16 14 13 19 19 H 1.48503 * 109.47141 * 270.00018 * 18 16 14 20 20 H 1.48504 * 109.47218 * 149.99690 * 18 16 14 21 21 H 1.48499 * 109.46971 * 29.99775 * 18 16 14 22 22 C 1.39929 * 119.99770 * 185.08147 * 12 10 8 23 23 C 1.38865 * 120.07216 * 297.19351 * 22 12 10 24 24 C 1.38117 * 119.92557 * 179.72023 * 23 22 12 25 25 C 1.38273 * 120.07312 * 0.57548 * 24 23 22 26 26 C 1.50700 * 119.93323 * 179.70061 * 25 24 23 27 27 C 1.38286 * 120.14076 * 359.67517 * 25 24 23 28 28 C 1.38113 * 120.07042 * 0.04920 * 27 25 24 29 29 H 1.09002 * 109.47401 * 60.00519 * 1 2 3 30 30 H 1.09006 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47234 * 299.99596 * 1 2 3 32 32 H 1.08993 * 117.49684 * 359.97438 * 7 5 3 33 33 H 1.09001 * 117.49809 * 214.98213 * 7 5 3 34 34 H 1.09000 * 109.47151 * 324.74814 * 13 12 10 35 35 H 1.09005 * 109.46545 * 204.75050 * 13 12 10 36 36 H 0.96999 * 120.00104 * 354.81151 * 17 16 14 37 37 H 1.08004 * 120.03584 * 359.97302 * 23 22 12 38 38 H 1.08004 * 119.96220 * 180.25170 * 24 23 22 39 39 H 1.09004 * 109.46909 * 269.97930 * 26 25 24 40 40 H 1.09002 * 109.47043 * 29.97309 * 26 25 24 41 41 H 1.09001 * 109.47440 * 149.97519 * 26 25 24 42 42 H 1.07998 * 119.96465 * 180.02562 * 27 25 24 43 43 H 1.07995 * 120.03794 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0805 0.4539 0.4990 7 6 4.2411 1.8879 -1.2293 8 6 4.2009 2.6643 0.0884 9 1 5.1327 2.7576 0.6463 10 6 3.2731 3.8491 0.1699 11 8 2.7245 4.2596 -0.8309 12 7 3.0531 4.4524 1.3548 13 6 3.7994 4.0289 2.5422 14 6 5.1260 4.7428 2.5828 15 1 5.3561 5.4971 1.8449 16 6 6.0460 4.4329 3.5619 17 7 5.8083 3.4468 4.3991 18 14 7.6298 5.4136 3.6995 19 1 8.6791 4.7795 2.8615 20 1 8.0753 5.4383 5.1159 21 1 7.3942 6.8027 3.2304 22 6 2.1119 5.4834 1.4508 23 6 2.2958 6.6619 0.7396 24 6 1.3619 7.6753 0.8321 25 6 0.2510 7.5221 1.6410 26 6 -0.7625 8.6326 1.7448 27 6 0.0677 6.3519 2.3546 28 6 0.9949 5.3324 2.2620 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.5967 2.2337 -2.0374 33 1 5.1993 1.4700 -1.5382 34 1 3.9670 2.9527 2.5013 35 1 3.2275 4.2739 3.4372 36 1 4.9547 2.9867 4.3767 37 1 3.1659 6.7842 0.1117 38 1 1.5023 8.5905 0.2760 39 1 -0.4868 9.3010 2.5605 40 1 -0.7861 9.1915 0.8093 41 1 -1.7475 8.2085 1.9397 42 1 -0.8013 6.2351 2.9852 43 1 0.8514 4.4189 2.8198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171402054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:01 Heat of formation + Delta-G solvation = -66.610230 kcal Electronic energy + Delta-G solvation = -27236.243932 eV Core-core repulsion = 23440.602681 eV Total energy + Delta-G solvation = -3795.641251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73273 -39.69370 -38.36874 -36.60305 -35.60817 -35.11651 -33.02506 -31.32253 -30.51061 -28.20822 -27.16270 -26.19764 -24.58681 -23.65269 -23.05668 -22.08074 -20.92957 -20.38937 -18.80991 -17.88711 -17.17774 -16.85892 -16.24099 -16.14757 -15.33642 -15.18240 -14.92453 -14.75057 -14.16052 -13.82580 -13.56773 -13.47106 -13.27818 -13.08635 -13.00625 -12.88681 -12.37643 -12.10846 -12.02465 -11.88955 -11.66752 -11.56348 -11.37891 -10.83878 -10.74504 -10.72152 -10.70880 -10.49127 -10.45694 -10.20797 -10.18282 -9.36932 -9.17896 -8.58387 -8.46351 -8.37400 -7.43514 -6.53548 -4.30854 1.75853 1.87874 2.20884 2.67084 3.25179 3.34383 3.39480 3.54647 3.66521 4.06285 4.21487 4.40739 4.81848 4.86575 4.89635 5.09224 5.12642 5.17195 5.18014 5.19169 5.20066 5.41803 5.48157 5.54706 5.61101 5.73395 5.76691 5.85447 5.91821 5.95386 6.10429 6.15536 6.26719 6.45136 6.45966 6.58099 6.75215 6.78341 6.96988 7.05972 7.24333 7.68906 7.81773 7.90753 8.09256 8.36324 8.62419 8.99319 9.40005 10.81035 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007513 B = 0.006848 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.028203 B = 4087.893811 C = 6713.427887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.480 3.520 4 O -0.476 6.476 5 C -0.151 4.151 6 H 0.142 0.858 7 C -0.120 4.120 8 C -0.138 4.138 9 H 0.154 0.846 10 C 0.568 3.432 11 O -0.543 6.543 12 N -0.552 5.552 13 C 0.232 3.768 14 C -0.616 4.616 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.904 5.904 18 Si 1.071 2.929 19 H -0.286 1.286 20 H -0.283 1.283 21 H -0.287 1.287 22 C 0.179 3.821 23 C -0.103 4.103 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.106 4.106 27 C -0.113 4.113 28 C -0.121 4.121 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.268 0.732 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 -2.302 -6.607 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.322 3.678 4 O -0.361 6.361 5 C -0.171 4.171 6 H 0.160 0.840 7 C -0.157 4.157 8 C -0.159 4.159 9 H 0.172 0.828 10 C 0.357 3.643 11 O -0.421 6.421 12 N -0.278 5.278 13 C 0.112 3.888 14 C -0.654 4.654 15 H 0.075 0.925 16 C -0.179 4.179 17 N -0.539 5.539 18 Si 0.898 3.102 19 H -0.212 1.212 20 H -0.208 1.208 21 H -0.213 1.213 22 C 0.087 3.913 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.163 4.163 27 C -0.131 4.131 28 C -0.141 4.141 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.698 -1.723 -6.289 10.089 hybrid contribution -1.508 -0.226 -0.505 1.606 sum -9.206 -1.948 -6.794 11.606 Atomic orbital electron populations 1.23221 0.76520 1.03307 1.02590 1.86458 1.23172 1.33331 1.84596 1.22657 0.90559 0.81481 0.73141 1.90797 1.66258 1.35632 1.43462 1.21759 0.88599 0.99272 1.07445 0.83983 1.23088 1.02145 0.99501 0.90968 1.22499 1.01915 0.89074 1.02440 0.82831 1.19012 0.79970 0.82824 0.82532 1.90601 1.50270 1.65884 1.35309 1.45452 1.37868 1.33629 1.10839 1.19566 0.91506 0.95774 0.81937 1.22329 1.01429 1.24982 1.16694 0.92501 1.25813 1.03279 0.96247 0.92595 1.70799 1.25518 1.19545 1.38069 0.83508 0.74624 0.75424 0.76610 1.21205 1.20826 1.21319 1.17522 0.89110 0.88115 0.96563 1.21169 0.99189 0.92080 0.99812 1.20789 0.94228 0.98596 0.99468 1.19763 0.96737 0.95912 0.98486 1.20699 0.97139 0.96516 1.01939 1.20726 0.99089 0.93246 1.00074 1.21082 0.93282 0.99180 1.00566 0.92020 0.88261 0.91967 0.87119 0.86394 0.95215 0.95609 0.92122 0.86262 0.86396 0.91631 0.91987 0.92040 0.86423 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.26 10.57 -39.25 -0.41 -5.68 16 3 C 0.48 8.31 7.71 36.00 0.28 8.59 16 4 O -0.48 -9.89 13.21 -25.66 -0.34 -10.23 16 5 C -0.15 -2.37 6.30 -91.77 -0.58 -2.94 16 6 H 0.14 1.84 8.14 -51.93 -0.42 1.42 16 7 C -0.12 -1.74 9.74 -26.73 -0.26 -2.00 16 8 C -0.14 -2.57 4.64 -91.77 -0.43 -3.00 16 9 H 0.15 2.96 7.26 -51.93 -0.38 2.58 16 10 C 0.57 12.67 4.95 -10.99 -0.05 12.61 16 11 O -0.54 -13.13 14.71 -15.02 -0.22 -13.35 16 12 N -0.55 -12.69 2.54 -114.73 -0.29 -12.98 16 13 C 0.23 5.64 4.18 -5.19 -0.02 5.62 16 14 C -0.62 -16.24 8.92 -34.44 -0.31 -16.55 16 15 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 16 C 0.03 0.69 5.45 -17.82 -0.10 0.59 16 17 N -0.90 -25.27 13.65 55.43 0.76 -24.51 16 18 Si 1.07 23.96 29.91 -169.99 -5.08 18.87 16 19 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 22 C 0.18 3.94 5.01 -83.69 -0.42 3.53 16 23 C -0.10 -2.13 9.07 -39.39 -0.36 -2.48 16 24 C -0.11 -1.94 9.69 -39.61 -0.38 -2.33 16 25 C -0.11 -1.74 5.88 -104.59 -0.62 -2.35 16 26 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 27 C -0.11 -1.90 9.69 -39.61 -0.38 -2.28 16 28 C -0.12 -2.41 9.48 -39.39 -0.37 -2.78 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 32 H 0.11 1.74 7.70 -51.93 -0.40 1.34 16 33 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.03 0.73 6.47 -51.93 -0.34 0.39 16 35 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 36 H 0.27 7.42 7.16 -40.82 -0.29 7.13 16 37 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 38 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -33.05 368.51 -8.69 -41.74 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.08 Total: 5.77 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.57 Total: -5.18 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.46 Total: -37.49 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.97 Total: -29.26 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.08 Total: 18.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.05 -8.69 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171402054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.872 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds