Wall clock time and date at job start Tue Mar 31 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00052 * 2 1 4 4 O 1.20829 * 119.99557 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00387 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.56083 * 329.44167 * 5 3 2 7 7 C 1.53005 * 117.50266 * 115.13727 * 5 3 2 8 8 C 1.53002 * 60.00105 * 107.49076 * 7 5 3 9 9 H 1.09003 * 117.50044 * 107.51567 * 8 7 5 10 10 C 1.50704 * 117.49758 * 252.51351 * 8 7 5 11 11 O 1.21288 * 119.99500 * 350.57508 * 10 8 7 12 12 N 1.34770 * 119.99866 * 170.57525 * 10 8 7 13 13 C 1.46500 * 120.00067 * 5.08768 * 12 10 8 14 14 C 1.50699 * 109.47200 * 84.75526 * 13 12 10 15 15 H 1.08000 * 120.00098 * 4.67623 * 14 13 12 16 16 C 1.37877 * 120.00090 * 184.67669 * 14 13 12 17 17 N 1.31519 * 119.99958 * 5.06494 * 16 14 13 18 18 Si 1.86800 * 120.00353 * 185.06862 * 16 14 13 19 19 H 1.48503 * 109.47141 * 270.00018 * 18 16 14 20 20 H 1.48504 * 109.47218 * 149.99690 * 18 16 14 21 21 H 1.48499 * 109.46971 * 29.99775 * 18 16 14 22 22 C 1.39929 * 119.99770 * 185.08147 * 12 10 8 23 23 C 1.38865 * 120.07216 * 297.19351 * 22 12 10 24 24 C 1.38117 * 119.92557 * 179.72023 * 23 22 12 25 25 C 1.38273 * 120.07312 * 0.57548 * 24 23 22 26 26 C 1.50700 * 119.93323 * 179.70061 * 25 24 23 27 27 C 1.38286 * 120.14076 * 359.67517 * 25 24 23 28 28 C 1.38113 * 120.07042 * 0.04920 * 27 25 24 29 29 H 1.09002 * 109.47401 * 60.00519 * 1 2 3 30 30 H 1.09006 * 109.46831 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47234 * 299.99596 * 1 2 3 32 32 H 1.08993 * 117.49684 * 359.97438 * 7 5 3 33 33 H 1.09001 * 117.49809 * 214.98213 * 7 5 3 34 34 H 1.09000 * 109.47151 * 324.74814 * 13 12 10 35 35 H 1.09005 * 109.46545 * 204.75050 * 13 12 10 36 36 H 0.96999 * 120.00104 * 354.81151 * 17 16 14 37 37 H 1.08004 * 120.03584 * 359.97302 * 23 22 12 38 38 H 1.08004 * 119.96220 * 180.25170 * 24 23 22 39 39 H 1.09004 * 109.46909 * 269.97930 * 26 25 24 40 40 H 1.09002 * 109.47043 * 29.97309 * 26 25 24 41 41 H 1.09001 * 109.47440 * 149.97519 * 26 25 24 42 42 H 1.07998 * 119.96465 * 180.02562 * 27 25 24 43 43 H 1.07995 * 120.03794 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0805 0.4539 0.4990 7 6 4.2411 1.8879 -1.2293 8 6 4.2009 2.6643 0.0884 9 1 5.1327 2.7576 0.6463 10 6 3.2731 3.8491 0.1699 11 8 2.7245 4.2596 -0.8309 12 7 3.0531 4.4524 1.3548 13 6 3.7994 4.0289 2.5422 14 6 5.1260 4.7428 2.5828 15 1 5.3561 5.4971 1.8449 16 6 6.0460 4.4329 3.5619 17 7 5.8083 3.4468 4.3991 18 14 7.6298 5.4136 3.6995 19 1 8.6791 4.7795 2.8615 20 1 8.0753 5.4383 5.1159 21 1 7.3942 6.8027 3.2304 22 6 2.1119 5.4834 1.4508 23 6 2.2958 6.6619 0.7396 24 6 1.3619 7.6753 0.8321 25 6 0.2510 7.5221 1.6410 26 6 -0.7625 8.6326 1.7448 27 6 0.0677 6.3519 2.3546 28 6 0.9949 5.3324 2.2620 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.5967 2.2337 -2.0374 33 1 5.1993 1.4700 -1.5382 34 1 3.9670 2.9527 2.5013 35 1 3.2275 4.2739 3.4372 36 1 4.9547 2.9867 4.3767 37 1 3.1659 6.7842 0.1117 38 1 1.5023 8.5905 0.2760 39 1 -0.4868 9.3010 2.5605 40 1 -0.7861 9.1915 0.8093 41 1 -1.7475 8.2085 1.9397 42 1 -0.8013 6.2351 2.9852 43 1 0.8514 4.4189 2.8198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171402054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:00 Heat of formation + Delta-G solvation = -83.959832 kcal Electronic energy + Delta-G solvation = -27236.996267 eV Core-core repulsion = 23440.602681 eV Total energy + Delta-G solvation = -3796.393586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16110 -41.18683 -39.79248 -37.95596 -37.07402 -36.82913 -34.93823 -32.76217 -31.96433 -29.29715 -28.93284 -27.68214 -25.88758 -25.26234 -24.70251 -23.61056 -22.29975 -21.71418 -20.35628 -19.43560 -18.97543 -18.31385 -17.84933 -17.45302 -16.83242 -16.75312 -16.35080 -16.06543 -15.65936 -15.56211 -15.05634 -14.74805 -14.58508 -14.50150 -14.44857 -14.32786 -14.01945 -13.71260 -13.38750 -13.10200 -13.09151 -12.95406 -12.82385 -12.53766 -12.35254 -12.10498 -11.97192 -11.91396 -11.83583 -11.78029 -11.57014 -11.29195 -10.89809 -10.58827 -10.07113 -9.93516 -9.10501 -8.64963 -6.47055 0.29718 0.40700 0.85129 1.43032 1.53408 1.60800 1.72954 1.79542 2.09019 2.51330 2.68513 2.75196 3.09031 3.42117 3.57058 3.63961 3.81296 3.87252 3.98273 4.00999 4.19817 4.21906 4.22976 4.38403 4.44468 4.46888 4.57200 4.65900 4.68551 4.71471 4.74562 4.79173 4.87667 4.94613 5.06633 5.13076 5.20951 5.33417 5.50041 5.60398 5.72911 5.76805 6.01520 6.15191 6.42955 6.54142 6.60653 7.24845 7.34724 8.66010 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007513 B = 0.006848 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3726.028203 B = 4087.893811 C = 6713.427887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.476 3.524 4 O -0.518 6.518 5 C -0.142 4.142 6 H 0.175 0.825 7 C -0.088 4.088 8 C -0.174 4.174 9 H 0.144 0.856 10 C 0.561 3.439 11 O -0.572 6.572 12 N -0.556 5.556 13 C 0.249 3.751 14 C -0.620 4.620 15 H 0.040 0.960 16 C -0.012 4.012 17 N -0.921 5.921 18 Si 1.113 2.887 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.134 3.866 23 C -0.128 4.128 24 C -0.112 4.112 25 C -0.100 4.100 26 C -0.103 4.103 27 C -0.109 4.109 28 C -0.141 4.141 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.027 0.973 35 H 0.006 0.994 36 H 0.259 0.741 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -2.110 -6.913 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.320 3.680 4 O -0.407 6.407 5 C -0.161 4.161 6 H 0.192 0.808 7 C -0.125 4.125 8 C -0.195 4.195 9 H 0.161 0.839 10 C 0.352 3.648 11 O -0.452 6.452 12 N -0.282 5.282 13 C 0.128 3.872 14 C -0.658 4.658 15 H 0.059 0.941 16 C -0.213 4.213 17 N -0.557 5.557 18 Si 0.935 3.065 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.208 1.208 22 C 0.044 3.956 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.100 4.100 26 C -0.159 4.159 27 C -0.128 4.128 28 C -0.161 4.161 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.181 0.819 34 H 0.045 0.955 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.170 0.830 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.231 -1.559 -6.603 10.667 hybrid contribution -1.523 -0.268 -0.419 1.602 sum -9.755 -1.827 -7.022 12.157 Atomic orbital electron populations 1.23548 0.74686 1.05904 1.02086 1.86451 1.24946 1.31711 1.83849 1.23031 0.91292 0.81579 0.72084 1.90790 1.67259 1.37102 1.45523 1.21983 0.87975 0.98038 1.08136 0.80792 1.23267 1.03557 0.96635 0.89003 1.22384 1.01265 0.89421 1.06386 0.83864 1.19614 0.79974 0.83371 0.81850 1.90548 1.51808 1.66928 1.35897 1.45459 1.38102 1.34158 1.10528 1.19202 0.90664 0.95287 0.82013 1.22425 1.02396 1.24634 1.16360 0.94128 1.27078 1.06044 0.96268 0.91901 1.70900 1.25292 1.20546 1.38953 0.82954 0.71971 0.74550 0.76994 1.19082 1.20526 1.20773 1.17946 0.90245 0.88738 0.98720 1.21211 0.99995 0.93112 1.00469 1.21169 0.93717 0.98578 0.99556 1.20312 0.96738 0.96647 0.96329 1.20789 0.96432 0.95203 1.03506 1.21158 0.99090 0.92553 0.99968 1.21215 0.93878 1.00180 1.00805 0.92316 0.84048 0.92779 0.88348 0.81917 0.95465 0.97622 0.93092 0.88217 0.83408 0.89968 0.90368 0.90172 0.82999 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.35 -10.07 10.57 -51.41 -0.54 -10.61 16 3 C 0.48 16.64 7.71 71.23 0.55 17.19 16 4 O -0.52 -22.40 13.21 28.55 0.38 -22.02 16 5 C -0.14 -4.37 6.30 -11.54 -0.07 -4.44 16 6 H 0.17 4.16 8.14 -2.39 -0.02 4.14 16 7 C -0.09 -2.46 9.74 30.60 0.30 -2.16 16 8 C -0.17 -6.62 4.64 -11.54 -0.05 -6.68 16 9 H 0.14 5.71 7.26 -2.39 -0.02 5.69 16 10 C 0.56 26.41 4.95 87.66 0.43 26.84 16 11 O -0.57 -29.20 14.71 16.62 0.24 -28.96 16 12 N -0.56 -27.23 2.54 -635.30 -1.62 -28.84 16 13 C 0.25 12.82 4.18 85.63 0.36 13.18 16 14 C -0.62 -33.96 8.92 25.60 0.23 -33.73 16 15 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 16 C -0.01 -0.67 5.45 84.65 0.46 -0.21 16 17 N -0.92 -52.31 13.65 21.45 0.29 -52.02 16 18 Si 1.11 48.24 29.91 68.60 2.05 50.29 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 C 0.13 6.29 5.01 38.15 0.19 6.48 16 23 C -0.13 -5.56 9.07 22.39 0.20 -5.35 16 24 C -0.11 -3.82 9.69 22.25 0.22 -3.60 16 25 C -0.10 -3.01 5.88 -19.84 -0.12 -3.12 16 26 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 27 C -0.11 -3.59 9.69 22.25 0.22 -3.37 16 28 C -0.14 -5.84 9.48 22.39 0.21 -5.63 16 29 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.10 3.06 7.70 -2.39 -0.02 3.04 16 33 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.03 1.41 6.47 -2.39 -0.02 1.39 16 35 H 0.01 0.31 7.68 -2.38 -0.02 0.30 16 36 H 0.26 14.81 7.16 -92.71 -0.66 14.15 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 42 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 43 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -76.18 368.51 6.96 -69.22 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.12 Total: 26.99 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.03 Total: -4.04 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.32 Total: -80.86 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: 0.08 Total: -61.59 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.05 Total: 50.29 kcal Total: -76.18 6.96 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171402054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.737 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds