Wall clock time and date at job start Tue Mar 31 2020 11:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99458 * 2 1 4 4 O 1.20828 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99723 * 180.02562 * 3 2 1 6 6 H 1.08990 * 115.54998 * 35.28553 * 5 3 2 7 7 C 1.53000 * 117.49619 * 249.57770 * 5 3 2 8 8 C 1.53004 * 60.00106 * 252.51210 * 7 5 3 9 9 H 1.08999 * 117.51916 * 252.51977 * 8 7 5 10 10 C 1.50699 * 117.49806 * 107.48891 * 8 7 5 11 11 O 1.21288 * 119.99976 * 18.40182 * 10 8 7 12 12 N 1.34778 * 120.00029 * 198.39051 * 10 8 7 13 13 C 1.46496 * 120.00005 * 4.26668 * 12 10 8 14 14 C 1.50705 * 109.47246 * 89.11826 * 13 12 10 15 15 H 1.07998 * 119.99947 * 2.06937 * 14 13 12 16 16 C 1.37879 * 120.00103 * 181.79290 * 14 13 12 17 17 N 1.31506 * 119.99864 * 174.91922 * 16 14 13 18 18 Si 1.86799 * 119.99700 * 354.91815 * 16 14 13 19 19 H 1.48506 * 109.47180 * 94.82013 * 18 16 14 20 20 H 1.48503 * 109.46983 * 214.81811 * 18 16 14 21 21 H 1.48501 * 109.47710 * 334.81708 * 18 16 14 22 22 C 1.39923 * 120.00196 * 184.26182 * 12 10 8 23 23 C 1.38880 * 120.06844 * 301.38977 * 22 12 10 24 24 C 1.38113 * 119.92407 * 179.72063 * 23 22 12 25 25 C 1.38284 * 120.07216 * 0.57032 * 24 23 22 26 26 C 1.50700 * 119.93044 * 179.69971 * 25 24 23 27 27 C 1.38279 * 120.14063 * 359.68394 * 25 24 23 28 28 C 1.38108 * 120.07276 * 0.03925 * 27 25 24 29 29 H 1.08998 * 109.47022 * 299.99666 * 1 2 3 30 30 H 1.08992 * 109.47614 * 60.00259 * 1 2 3 31 31 H 1.09008 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.09000 * 117.49718 * 145.02180 * 7 5 3 33 33 H 1.08993 * 117.50423 * 359.97438 * 7 5 3 34 34 H 1.09003 * 109.47222 * 329.11836 * 13 12 10 35 35 H 1.09001 * 109.47496 * 209.12158 * 13 12 10 36 36 H 0.97009 * 119.99642 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.03324 * 359.97438 * 23 22 12 38 38 H 1.08005 * 119.96256 * 180.25012 * 24 23 22 39 39 H 1.08997 * 109.47378 * 269.98385 * 26 25 24 40 40 H 1.09005 * 109.46806 * 29.98236 * 26 25 24 41 41 H 1.08998 * 109.46900 * 149.97885 * 26 25 24 42 42 H 1.08000 * 119.96389 * 180.02562 * 27 25 24 43 43 H 1.07997 * 120.04047 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0775 0.4982 -0.5690 7 6 4.2474 1.7846 1.2711 8 6 4.2007 2.6671 0.0221 9 1 5.1293 2.8061 -0.5314 10 6 3.2727 3.8544 0.0433 11 8 2.8576 4.2808 1.1002 12 7 2.9042 4.4424 -1.1121 13 6 3.3296 3.8718 -2.3926 14 6 2.3127 2.8599 -2.8542 15 1 1.4207 2.6859 -2.2707 16 6 2.5183 2.1604 -4.0245 17 7 1.6830 1.2076 -4.3763 18 14 3.9833 2.5664 -5.1100 19 1 5.1106 1.6575 -4.7804 20 1 3.6066 2.3908 -6.5357 21 1 4.3974 3.9733 -4.8771 22 6 2.1154 5.5978 -1.0886 23 6 0.8696 5.5774 -0.4751 24 6 0.0958 6.7212 -0.4486 25 6 0.5553 7.8825 -1.0423 26 6 -0.2945 9.1268 -1.0175 27 6 1.7930 7.9046 -1.6585 28 6 2.5740 6.7658 -1.6835 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 5.2071 1.3429 1.5396 33 1 3.6071 2.0632 2.1080 34 1 4.2970 3.3848 -2.2699 35 1 3.4143 4.6662 -3.1341 36 1 1.8279 0.7152 -5.1995 37 1 0.5081 4.6694 -0.0158 38 1 -0.8714 6.7071 0.0318 39 1 -0.9360 9.1464 -1.8984 40 1 -0.9114 9.1275 -0.1187 41 1 0.3492 10.0064 -1.0170 42 1 2.1492 8.8132 -2.1210 43 1 3.5408 6.7838 -2.1646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171402066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:03 Heat of formation + Delta-G solvation = -55.997852 kcal Electronic energy + Delta-G solvation = -27804.918258 eV Core-core repulsion = 24009.737194 eV Total energy + Delta-G solvation = -3795.181064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46722 -39.45870 -38.23827 -36.30415 -35.33638 -34.99876 -32.66877 -31.39300 -30.45190 -28.02818 -27.73553 -26.36528 -24.31655 -23.52950 -22.78647 -21.79704 -20.83535 -20.10647 -18.58862 -17.54928 -16.99244 -16.63181 -16.23843 -15.71319 -15.29734 -15.13223 -14.88754 -14.46524 -14.15760 -13.94711 -13.46837 -13.41044 -13.11385 -12.92966 -12.71140 -12.57579 -12.28429 -12.07617 -12.01386 -11.79106 -11.52757 -11.48159 -11.27817 -10.97143 -10.76914 -10.60276 -10.40702 -10.30115 -10.24766 -10.19363 -9.77141 -9.49971 -9.16275 -8.67851 -8.52126 -8.40607 -7.34860 -6.16974 -4.15571 1.78910 1.94126 2.70803 3.14462 3.16118 3.25476 3.26818 3.33997 3.67843 4.17915 4.29015 4.31146 4.94980 4.97707 5.07110 5.12514 5.21416 5.25901 5.40566 5.48431 5.55078 5.59183 5.62883 5.68926 5.77093 5.80031 5.91152 5.95881 5.99742 6.06165 6.17419 6.19197 6.22625 6.46642 6.59058 6.62669 6.81283 6.99344 7.04397 7.11231 7.27265 7.47823 7.72281 8.13951 8.43254 8.46114 8.94101 9.02345 9.43161 10.95396 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010202 B = 0.006263 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.978874 B = 4469.791063 C = 5593.954313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.358 6.358 3 C 0.496 3.504 4 O -0.474 6.474 5 C -0.123 4.123 6 H 0.140 0.860 7 C -0.129 4.129 8 C -0.144 4.144 9 H 0.135 0.865 10 C 0.568 3.432 11 O -0.547 6.547 12 N -0.543 5.543 13 C 0.210 3.790 14 C -0.531 4.531 15 H 0.090 0.910 16 C 0.077 3.923 17 N -0.889 5.889 18 Si 0.863 3.137 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.174 3.826 23 C -0.092 4.092 24 C -0.114 4.114 25 C -0.109 4.109 26 C -0.106 4.106 27 C -0.115 4.115 28 C -0.131 4.131 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.117 0.883 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 4.001 7.254 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.275 6.275 3 C 0.338 3.662 4 O -0.359 6.359 5 C -0.142 4.142 6 H 0.158 0.842 7 C -0.166 4.166 8 C -0.165 4.165 9 H 0.152 0.848 10 C 0.358 3.642 11 O -0.425 6.425 12 N -0.268 5.268 13 C 0.090 3.910 14 C -0.570 4.570 15 H 0.108 0.892 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.689 3.311 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.189 1.189 22 C 0.082 3.918 23 C -0.111 4.111 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.163 4.163 27 C -0.133 4.133 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.904 4.351 7.642 8.997 hybrid contribution 0.562 -0.139 -1.254 1.381 sum 2.466 4.212 6.388 8.039 Atomic orbital electron populations 1.23140 0.76662 1.02831 1.02485 1.86387 1.23091 1.33365 1.84649 1.22093 0.89952 0.81475 0.72730 1.90668 1.66072 1.35755 1.43376 1.21555 0.89724 0.98723 1.04210 0.84228 1.23102 1.02338 0.99888 0.91315 1.22180 1.01019 0.90097 1.03196 0.84751 1.19040 0.79876 0.82236 0.83074 1.90609 1.56475 1.64711 1.30747 1.45301 1.49307 1.24461 1.07769 1.19913 0.96158 0.94726 0.80164 1.21480 1.07407 1.19891 1.08188 0.89205 1.24829 0.96067 0.94525 0.97205 1.69888 1.37093 1.21724 1.24050 0.87031 0.83544 0.79497 0.80992 1.20044 1.20896 1.18921 1.17547 0.90544 0.86017 0.97721 1.21302 0.92453 0.98587 0.98796 1.20836 0.99532 0.92386 1.00545 1.19769 0.95664 0.95591 0.99917 1.20698 0.98851 0.94865 1.01893 1.20684 0.94380 0.97616 1.00642 1.21066 1.00089 0.91886 1.02078 0.92748 0.91257 0.88877 0.86783 0.87289 0.95140 0.94888 0.92584 0.85273 0.86546 0.91682 0.92032 0.92083 0.86458 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.56 101.05 1.07 1.76 16 2 O -0.36 -6.84 10.57 -39.25 -0.41 -7.26 16 3 C 0.50 10.19 7.25 36.01 0.26 10.45 16 4 O -0.47 -11.02 11.43 -24.00 -0.27 -11.29 16 5 C -0.12 -2.12 6.30 -91.77 -0.58 -2.69 16 6 H 0.14 2.15 8.14 -51.93 -0.42 1.72 16 7 C -0.13 -1.84 9.74 -26.73 -0.26 -2.10 16 8 C -0.14 -2.51 4.72 -91.77 -0.43 -2.95 16 9 H 0.13 2.00 7.38 -51.93 -0.38 1.62 16 10 C 0.57 12.13 4.57 -10.99 -0.05 12.08 16 11 O -0.55 -12.77 15.28 -8.66 -0.13 -12.90 16 12 N -0.54 -11.97 2.48 -114.73 -0.28 -12.25 16 13 C 0.21 4.80 4.02 -5.19 -0.02 4.78 16 14 C -0.53 -14.09 9.36 -34.44 -0.32 -14.41 16 15 H 0.09 2.71 6.38 -52.49 -0.34 2.38 16 16 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 18 Si 0.86 19.76 27.54 -169.99 -4.68 15.08 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -5.79 6.44 56.52 0.36 -5.43 16 22 C 0.17 3.72 5.17 -83.69 -0.43 3.29 16 23 C -0.09 -1.94 8.89 -39.39 -0.35 -2.29 16 24 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16 25 C -0.11 -1.73 5.88 -104.59 -0.62 -2.34 16 26 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 27 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 28 C -0.13 -2.44 9.34 -39.39 -0.37 -2.81 16 29 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.07 1.30 8.13 -51.93 -0.42 0.87 16 31 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.11 1.70 7.79 -51.93 -0.40 1.29 16 34 H 0.03 0.65 5.88 -51.93 -0.31 0.34 16 35 H 0.03 0.76 6.41 -51.93 -0.33 0.42 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.13 3.00 7.52 -52.49 -0.39 2.61 16 38 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.12 2.03 7.92 -52.49 -0.42 1.62 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -33.14 361.29 -8.14 -41.28 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.97 Total: 7.52 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.61 Total: -0.81 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.49 Total: -37.07 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.82 Total: -31.45 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.68 Total: 15.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.14 -8.14 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171402066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.713 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds